FFCP PHASE1:Hg19::chr5:147648304..147648364,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=153218 | |EntrezGene=153218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27200 | |HGNC=27200 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=22bp_to_uc003lpc.2,uc010jgt.2_5end | |association_with_transcript=22bp_to_uc003lpc.2,uc010jgt.2_5end | ||
|cluster_id=chr5:147648304..147648364,+ | |||
|coexpression_cluster_id=C106 | |coexpression_cluster_id=C106 | ||
|description=CAGE_peak_1_at_SPINK13_5end | |description=CAGE_peak_1_at_SPINK13_5end | ||
|id=chr5:147648304..147648364,+ | |id=chr5:147648304..147648364,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.79e-07!254 | |ontology_enrichment_celltype=CL:0000066!7.79e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002573;1.18e-07;2!CL:0000135;2.99e-07;3!CL:0000388;2.99e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,1.18e-07,2;CL:0000135,2.35e-07,3;CL:0000388,2.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.45e-13;29!UBERON:0007297;2.46e-11;2!UBERON:0003918;3.33e-08;10!UBERON:0007687;3.33e-08;10 | |||
|ontology_enrichment_disease=DOID:305!1.02e-10!106;DOID:0050687!4.13e-08!143;DOID:0060084!3.87e-07!3;DOID:127!3.87e-07!3;DOID:14566!5.66e-07!239 | |ontology_enrichment_disease=DOID:305!1.02e-10!106;DOID:0050687!4.13e-08!143;DOID:0060084!3.87e-07!3;DOID:127!3.87e-07!3;DOID:14566!5.66e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:0060084;1.16e-15;3!DOID:127;1.16e-15;3!DOID:0060072;7.11e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.10e-15,3;DOID:127,1.10e-15,3;DOID:0060072,6.85e-12,4;DOID:14566,3.39e-08,239;DOID:305,1.82e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!4.02e-19!9;UBERON:0001557!3.91e-11!19;UBERON:0004175!1.66e-10!25;UBERON:0008947!3.72e-09!38;UBERON:0003258!3.72e-09!38;UBERON:0005156!1.32e-08!59;UBERON:0000990!1.32e-08!59;UBERON:0000065!6.56e-08!53;UBERON:0000072!8.95e-08!46;UBERON:0006554!1.08e-07!44;UBERON:0001008!1.98e-07!45;UBERON:0006947!2.49e-07!3;UBERON:0004054!2.49e-07!3;UBERON:0003133!2.52e-07!48;UBERON:0000995!2.80e-07!21;UBERON:0002113!2.92e-07!27;UBERON:0003918!2.92e-07!27;UBERON:0005095!2.92e-07!27;UBERON:0007687!2.92e-07!27;UBERON:0005795!7.58e-07!22;UBERON:0003975!7.58e-07!22;UBERON:0000489!9.37e-07!32 | |ontology_enrichment_uberon=UBERON:0001737!4.02e-19!9;UBERON:0001557!3.91e-11!19;UBERON:0004175!1.66e-10!25;UBERON:0008947!3.72e-09!38;UBERON:0003258!3.72e-09!38;UBERON:0005156!1.32e-08!59;UBERON:0000990!1.32e-08!59;UBERON:0000065!6.56e-08!53;UBERON:0000072!8.95e-08!46;UBERON:0006554!1.08e-07!44;UBERON:0001008!1.98e-07!45;UBERON:0006947!2.49e-07!3;UBERON:0004054!2.49e-07!3;UBERON:0003133!2.52e-07!48;UBERON:0000995!2.80e-07!21;UBERON:0002113!2.92e-07!27;UBERON:0003918!2.92e-07!27;UBERON:0005095!2.92e-07!27;UBERON:0007687!2.92e-07!27;UBERON:0005795!7.58e-07!22;UBERON:0003975!7.58e-07!22;UBERON:0000489!9.37e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.66e-46;9!UBERON:0001557;3.66e-46;9!UBERON:0004175;8.51e-18;21!UBERON:0006947;3.63e-16;3!UBERON:0004054;3.63e-16;3!UBERON:0005904;3.01e-12;4!UBERON:0003135;2.53e-11;11!UBERON:0000995;6.14e-10;17!UBERON:0000072;1.54e-09;37!UBERON:0003975;2.37e-09;18!UBERON:0003133;2.61e-08;44!UBERON:0000065;4.83e-08;44!UBERON:0007846;2.99e-07;3!UBERON:0000043;2.99e-07;3!UBERON:0007845;2.99e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.67e-46,9;UBERON:0001557,5.27e-21,19;UBERON:0006947,3.64e-16,3;UBERON:0004054,3.64e-16,3;UBERON:0004175,1.01e-14,25;UBERON:0005904,3.01e-12,4;UBERON:0003135,2.65e-11,11;UBERON:0003133,2.10e-10,48;UBERON:0008947,1.12e-09,38;UBERON:0003258,1.12e-09,38;UBERON:0005156,4.50e-08,59;UBERON:0000990,4.50e-08,59;UBERON:0000995,5.98e-08,21;UBERON:0005795,1.47e-07,22;UBERON:0003975,1.47e-07,22;UBERON:0000072,1.63e-07,47;UBERON:0007846,2.35e-07,3;UBERON:0000043,2.35e-07,3;UBERON:0007845,2.35e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0.61560529038394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0.622822248995575,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0.722878304769133,0.50133791063589,1.44846518960824,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0.37223371266318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,160.542327654068,130.147380740295,136.412242914051,159.043908680112,143.800433100988,127.414322462659,152.629040837306,157.369615030528,171.212484841144,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0,0,0,0,0,0.231046011313244,0.784349769176855,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0.764628819135115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0,0,0,1.77380532035299,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78406173895242,0,0,0,0,1.30998378285754,0.146508179271894,0,0,0,0,0,0,0,0,0.111308705022906,0,0.422250816255987,0,0,0,0.409074730008619,0,0,0,0.358042349351218,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3631081715956,3.20674611840788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26598838716816,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,123.504918091859,0,0,0,0,0.103688191397247,0,0,0,0,0.569219092059585,0.970722711091971,0,0,0,89.9842341446455,0,0.387025325156341,0.0730893170861856,0.574808199372465,0,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0.171594997861965,0,0.124252535565433,2.12124631155116,1.08723364858891,1.569042694685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27955725969173,0,0,0,0,0,0,0,0.77380195455795,0,0,2.60058834087354,0.0524545881349981,0.105600336519406,0.896436696664224,0,0,0,0,14.1179896455965,2.5926644736038,38.2107211328009,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,2.0125432140206,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0.76872455576384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1441462864015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42786241694653,0.682986574053893,0.0887023701626388,0,0,0,0,0,0.889851215136553,0.863424021355654,0,0,0,34.1165594125422,5.7330202546446,0,0,0.116241425368125,0,0,0.207216164163037,3.92652497316085,0,0,6.27159603871996,6.30579195217767,46.9959625711931,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,0,1.85997509083376,2.77305377178851,0.432626562123789,0,0,0,0,0,0,0,3.56159881625725,2.14371304124943,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0.61560529038394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0.622822248995575,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0,0.722878304769133,0.50133791063589,1.44846518960824,0,0,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0.37223371266318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,160.542327654068,130.147380740295,136.412242914051,159.043908680112,143.800433100988,127.414322462659,152.629040837306,157.369615030528,171.212484841144,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0.200506470303285,0,0,0,0,0,0.231046011313244,0.784349769176855,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0.764628819135115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0.37064843820784,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0.876901770507525,0,0,0,0,0,0,0,0,1.77380532035299,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78406173895242,0,0,0,0,1.30998378285754,0.146508179271894,0,0,0,0,0,0,0,0,0.111308705022906,0,0.422250816255987,0,0,0,0.409074730008619,0,0,0,0.358042349351218,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3631081715956,3.20674611840788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26598838716816,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,123.504918091859,0,0,0,0,0.103688191397247,0,0,0,0,0.569219092059585,0.970722711091971,0,0,0,89.9842341446455,0,0.387025325156341,0.0730893170861856,0.574808199372465,0,0,0,0,0,0,0.391102765469606,0,0,0,0,0,0.171594997861965,0,0.124252535565433,2.12124631155116,1.08723364858891,1.569042694685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27955725969173,0,0,0,0,0,0,0,0.77380195455795,0,0,2.60058834087354,0.0524545881349981,0.105600336519406,0.896436696664224,0,0,0,0,14.1179896455965,2.5926644736038,38.2107211328009,0,0,0,0,0,0,0,0,0.171086837884329,0,0.213574825135389,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,2.0125432140206,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0.76872455576384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1441462864015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42786241694653,0.682986574053893,0.0887023701626388,0,0,0,0,0,0.889851215136553,0.863424021355654,0,0,0,34.1165594125422,5.7330202546446,0,0,0.116241425368125,0,0,0.207216164163037,3.92652497316085,0,0,6.27159603871996,6.30579195217767,46.9959625711931,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.301925687133347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,0,1.85997509083376,2.77305377178851,0.432626562123789,0,0,0,0,0,0,0,3.56159881625725,2.14371304124943,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p1@SPINK13 | |short_description=p1@SPINK13 | ||
}} | }} |
Latest revision as of 23:57, 15 September 2015
Short description: | p1@SPINK13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SPINK13_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | 22bp_to_uc003lpc.2, uc010jgt.2_5end |
EntrezGene: | SPINK13 |
HGNC: | 27200 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 1.18e-07 | 2 |
fibrocyte | 2.35e-07 | 3 |
tendon cell | 2.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.67e-46 | 9 |
upper respiratory tract | 5.27e-21 | 19 |
male genital duct | 3.64e-16 | 3 |
internal male genitalia | 3.64e-16 | 3 |
internal genitalia | 1.01e-14 | 25 |
duct of male reproductive system | 3.01e-12 | 4 |
male reproductive organ | 2.65e-11 | 11 |
reproductive organ | 2.10e-10 | 48 |
respiratory primordium | 1.12e-09 | 38 |
endoderm of foregut | 1.12e-09 | 38 |
reproductive structure | 4.50e-08 | 59 |
reproductive system | 4.50e-08 | 59 |
uterus | 5.98e-08 | 21 |
embryonic uterus | 1.47e-07 | 22 |
internal female genitalia | 1.47e-07 | 22 |
segment of respiratory tract | 1.63e-07 | 47 |
dense regular connective tissue | 2.35e-07 | 3 |
tendon | 2.35e-07 | 3 |
regular connective tissue | 2.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.10e-15 | 3 |
leiomyoma | 1.10e-15 | 3 |
benign neoplasm | 6.85e-12 | 4 |
disease of cellular proliferation | 3.39e-08 | 239 |
carcinoma | 1.82e-07 | 106 |