FFCP PHASE1:Hg19::chr4:165953174..165953189,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=166655 | |EntrezGene=166655 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21162 | |HGNC=21162 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAS2 | |UniProt=D6RAS2 | ||
|association_with_transcript=22bp_to_ENST00000507119_5end | |association_with_transcript=22bp_to_ENST00000507119_5end | ||
|cluster_id=chr4:165953174..165953189,+ | |||
|coexpression_cluster_id=C196 | |coexpression_cluster_id=C196 | ||
|description=CAGE_peak_1_at_TRIM60_5end | |description=CAGE_peak_1_at_TRIM60_5end | ||
|id=chr4:165953174..165953189,+ | |id=chr4:165953174..165953189,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.18e-92!7;CL:0000586!1.18e-92!7;CL:0002541!3.35e-07!3 | |ontology_enrichment_celltype=CL:0000039!1.18e-92!7;CL:0000586!1.18e-92!7;CL:0002541!3.35e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000039;8.03e-117;7!CL:0000586;8.03e-117;7!CL:0000083;1.50e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,7.13e-117,7;CL:0000586,7.13e-117,7;CL:0000083,1.57e-09,4 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.31e-53;10!UBERON:0005564;4.31e-53;10 | |||
|ontology_enrichment_disease=DOID:3095!1.38e-29!22;DOID:2994!1.38e-29!22;DOID:1799!1.88e-19!1;DOID:10165!1.88e-19!1;DOID:1798!1.88e-19!1 | |ontology_enrichment_disease=DOID:3095!1.38e-29!22;DOID:2994!1.38e-29!22;DOID:1799!1.88e-19!1;DOID:10165!1.88e-19!1;DOID:1798!1.88e-19!1 | ||
|ontology_enrichment_disease_v019=DOID:3095;9.55e-38;22!DOID:2994;9.55e-38;22!DOID:1799;5.97e-34;1!DOID:10165;5.97e-34;1!DOID:1798;5.97e-34;1!DOID:1793;1.50e-09;4!DOID:170;8.73e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,9.20e-38,22;DOID:2994,9.20e-38,22;DOID:1799,7.06e-34,1;DOID:10165,7.06e-34,1;DOID:1798,7.06e-34,1;DOID:1793,1.57e-09,4;DOID:0050687,1.02e-08,143;DOID:305,3.00e-08,106;DOID:170,8.97e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000473!7.23e-81!8;UBERON:0003135!7.06e-59!11;UBERON:0000991!6.69e-31!21;UBERON:0009196!6.69e-31!21;UBERON:0009117!6.69e-31!21;UBERON:0005564!6.69e-31!21;UBERON:0004176!1.69e-29!22;UBERON:0003101!1.69e-29!22;UBERON:0000079!1.69e-29!22;UBERON:0002323!5.13e-19!46;UBERON:0003133!3.71e-18!48;UBERON:0004458!7.74e-18!49;UBERON:0005156!1.01e-14!59;UBERON:0000990!1.01e-14!59;UBERON:0003886!8.17e-14!63;UBERON:0002553!2.11e-12!70;UBERON:0003124!4.27e-11!7;UBERON:0000464!3.15e-08!104;UBERON:0000476!3.35e-07!3;UBERON:0000920!3.35e-07!3 | |ontology_enrichment_uberon=UBERON:0000473!7.23e-81!8;UBERON:0003135!7.06e-59!11;UBERON:0000991!6.69e-31!21;UBERON:0009196!6.69e-31!21;UBERON:0009117!6.69e-31!21;UBERON:0005564!6.69e-31!21;UBERON:0004176!1.69e-29!22;UBERON:0003101!1.69e-29!22;UBERON:0000079!1.69e-29!22;UBERON:0002323!5.13e-19!46;UBERON:0003133!3.71e-18!48;UBERON:0004458!7.74e-18!49;UBERON:0005156!1.01e-14!59;UBERON:0000990!1.01e-14!59;UBERON:0003886!8.17e-14!63;UBERON:0002553!2.11e-12!70;UBERON:0003124!4.27e-11!7;UBERON:0000464!3.15e-08!104;UBERON:0000476!3.35e-07!3;UBERON:0000920!3.35e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.98e-66;8!UBERON:0003135;2.39e-48;11!UBERON:0000991;1.01e-25;21!UBERON:0003101;1.38e-24;22!UBERON:0000079;1.38e-24;22!UBERON:0002323;4.89e-17;45!UBERON:0002553;6.37e-11;52!UBERON:0004458;1.35e-10;48!UBERON:0003133;1.52e-09;44!UBERON:0000922;3.22e-09;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.66e-66,8;UBERON:0003135,2.24e-48,11;UBERON:0000991,9.82e-26,21;UBERON:0009196,9.82e-26,21;UBERON:0009117,9.82e-26,21;UBERON:0005564,9.82e-26,21;UBERON:0004176,1.34e-24,22;UBERON:0003101,1.34e-24,22;UBERON:0000079,1.34e-24,22;UBERON:0002323,2.06e-18,46;UBERON:0004458,2.55e-17,49;UBERON:0003886,9.10e-16,54;UBERON:0002553,5.12e-14,61;UBERON:0003133,1.25e-11,48;UBERON:0005156,1.45e-09,59;UBERON:0000990,1.45e-09,59 | |||
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|short_description=p1@TRIM60 | |short_description=p1@TRIM60 | ||
}} | }} |
Latest revision as of 14:07, 16 September 2015
Short description: | p1@TRIM60 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM60_5end |
Coexpression cluster: | C196_testicular_iPS_H9_teratocarcinoma_HES3GFP_choriocarcinoma_endometrial |
Association with transcript: | 22bp_to_ENST00000507119_5end |
EntrezGene: | TRIM60 |
HGNC: | 21162 |
UniProt: | D6RAS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 7.13e-117 | 7 |
germ cell | 7.13e-117 | 7 |
epithelial cell of pancreas | 1.57e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
testis | 3.66e-66 | 8 |
male reproductive organ | 2.24e-48 | 11 |
gonad | 9.82e-26 | 21 |
indifferent external genitalia | 9.82e-26 | 21 |
indifferent gonad | 9.82e-26 | 21 |
gonad primordium | 9.82e-26 | 21 |
external genitalia | 1.34e-24 | 22 |
male organism | 1.34e-24 | 22 |
male reproductive system | 1.34e-24 | 22 |
body cavity | 2.06e-18 | 46 |
body cavity or lining | 2.55e-17 | 49 |
body cavity precursor | 9.10e-16 | 54 |
anatomical cavity | 5.12e-14 | 61 |
reproductive organ | 1.25e-11 | 48 |
reproductive structure | 1.45e-09 | 59 |
reproductive system | 1.45e-09 | 59 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.20e-38 | 22 |
germ cell cancer | 9.20e-38 | 22 |
islet cell tumor | 7.06e-34 | 1 |
endocrine pancreas cancer | 7.06e-34 | 1 |
pancreatic endocrine carcinoma | 7.06e-34 | 1 |
pancreatic cancer | 1.57e-09 | 4 |
cell type cancer | 1.02e-08 | 143 |
carcinoma | 3.00e-08 | 106 |
endocrine gland cancer | 8.97e-07 | 6 |