FFCP PHASE1:Hg19::chr3:58853593..58853604,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:58853593..58853604,- | |||
|coexpression_cluster_id=C1222 | |coexpression_cluster_id=C1222 | ||
|description=CAGE_peak_at_chr3:58853593..58853604,- | |description=CAGE_peak_at_chr3:58853593..58853604,- | ||
|id=chr3:58853593..58853604,- | |id=chr3:58853593..58853604,- | ||
|ontology_enrichment_celltype=CL:0000945!1.20e-19!24;CL:0000826!1.20e-19!24;CL:0000819!5.42e-15!1;CL:0000838!6.46e-09!52;CL:0000542!9.66e-09!53;CL:0000051!9.66e-09!53;CL:0000785!3.82e-08!2;CL:0000955!3.82e-08!2;CL:0000818!3.82e-08!2;CL:0000954!3.82e-08!2;CL:0000816!3.82e-08!2 | |ontology_enrichment_celltype=CL:0000945!1.20e-19!24;CL:0000826!1.20e-19!24;CL:0000819!5.42e-15!1;CL:0000838!6.46e-09!52;CL:0000542!9.66e-09!53;CL:0000051!9.66e-09!53;CL:0000785!3.82e-08!2;CL:0000955!3.82e-08!2;CL:0000818!3.82e-08!2;CL:0000954!3.82e-08!2;CL:0000816!3.82e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0000785;1.48e-40;1!CL:0000819;1.48e-40;1!CL:0000945;1.19e-15;24!CL:0000542;3.51e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000819,9.91e-41,1;CL:0000785,3.81e-21,2;CL:0000955,3.81e-21,2;CL:0000818,3.81e-21,2;CL:0000954,3.81e-21,2;CL:0000816,3.81e-21,2;CL:0000945,1.19e-15,24;CL:0000826,1.19e-15,24;CL:0000817,1.40e-14,3;CL:0000838,1.18e-07,52;CL:0000542,1.59e-07,53;CL:0000051,1.59e-07,53 | |||
|ontology_enrichment_development_v019=UBERON:0001045;6.62e-41;1!CL:0000954;4.66e-21;2!CL:0000051;3.51e-07;53 | |||
|ontology_enrichment_disease=DOID:0060073!5.42e-15!1;DOID:8675!5.42e-15!1;DOID:0060058!7.90e-13!10 | |ontology_enrichment_disease=DOID:0060073!5.42e-15!1;DOID:8675!5.42e-15!1;DOID:0060058!7.90e-13!10 | ||
|ontology_enrichment_disease_v019=DOID:0060073;1.48e-40;1!DOID:8675;1.48e-40;1!DOID:0060058;3.44e-36;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,9.91e-41,1;DOID:8675,9.91e-41,1;DOID:0060058,3.44e-36,10;DOID:2531,8.60e-08,51;DOID:0060083,8.60e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0001154!4.73e-15!1;UBERON:0001153!4.73e-15!1;UBERON:0002372!8.17e-15!1;UBERON:0001961!8.17e-15!1;UBERON:0001744!8.17e-15!1;UBERON:0001735!8.17e-15!1;UBERON:0007190!3.15e-14!1;UBERON:0002360!5.37e-08!2;UBERON:0000094!5.37e-08!2;UBERON:0007645!5.37e-08!2 | |ontology_enrichment_uberon=UBERON:0001154!4.73e-15!1;UBERON:0001153!4.73e-15!1;UBERON:0002372!8.17e-15!1;UBERON:0001961!8.17e-15!1;UBERON:0001744!8.17e-15!1;UBERON:0001735!8.17e-15!1;UBERON:0007190!3.15e-14!1;UBERON:0002360!5.37e-08!2;UBERON:0000094!5.37e-08!2;UBERON:0007645!5.37e-08!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0001154;6.62e-41;1!UBERON:0001153;6.62e-41;1!UBERON:0009854;6.62e-41;1!UBERON:0002372;3.30e-40;1!UBERON:0001961;3.30e-40;1!UBERON:0001744;3.30e-40;1!UBERON:0001042;3.30e-40;1!UBERON:0001735;3.30e-40;1!UBERON:0006562;6.96e-21;2!UBERON:0009856;2.53e-11;4!UBERON:0004907;2.53e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,6.62e-41,1;UBERON:0001153,6.62e-41,1;UBERON:0001045,6.62e-41,1;UBERON:0002372,3.30e-40,1;UBERON:0001961,3.30e-40,1;UBERON:0001744,3.30e-40,1;UBERON:0001735,3.30e-40,1;UBERON:0004907,2.53e-09,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,2.32401601740905,2.13253848731132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.635020748171649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68380132536469,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,2.32401601740905,2.13253848731132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.635020748171649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86797481743607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68380132536469,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:58853593..58853604,- | |short_description=p@chr3:58853593..58853604,- | ||
}} | }} |
Latest revision as of 23:00, 29 July 2015
Short description: | p@chr3:58853593..58853604, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:58853593..58853604, - |
Coexpression cluster: | C1222_appendix_Burkitt_tonsil_lymph_diffuse_lymphoma_salivary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B-1 B cell | 9.91e-41 | 1 |
mature B cell | 3.81e-21 | 2 |
pre-B-II cell | 3.81e-21 | 2 |
transitional stage B cell | 3.81e-21 | 2 |
small pre-B-II cell | 3.81e-21 | 2 |
immature B cell | 3.81e-21 | 2 |
lymphocyte of B lineage | 1.19e-15 | 24 |
pro-B cell | 1.19e-15 | 24 |
precursor B cell | 1.40e-14 | 3 |
lymphoid lineage restricted progenitor cell | 1.18e-07 | 52 |
lymphocyte | 1.59e-07 | 53 |
common lymphoid progenitor | 1.59e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 6.62e-41 | 1 |
caecum | 6.62e-41 | 1 |
midgut | 6.62e-41 | 1 |
tonsil | 3.30e-40 | 1 |
mucosa-associated lymphoid tissue | 3.30e-40 | 1 |
lymphoid tissue | 3.30e-40 | 1 |
tonsillar ring | 3.30e-40 | 1 |
lower digestive tract | 2.53e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 9.91e-41 | 1 |
lymphosarcoma | 9.91e-41 | 1 |
lymphoma | 3.44e-36 | 10 |
hematologic cancer | 8.60e-08 | 51 |
immune system cancer | 8.60e-08 | 51 |