FFCP PHASE1:Hg19::chr3:165178316..165178330,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:165178316..165178330,+ | |||
|coexpression_cluster_id=C221 | |coexpression_cluster_id=C221 | ||
|description=CAGE_peak_at_chr3:165178316..165178330,+ | |description=CAGE_peak_at_chr3:165178316..165178330,+ | ||
|id=chr3:165178316..165178330,+ | |id=chr3:165178316..165178330,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.71e-20!254;CL:0002159!4.42e-10!13;CL:0002076!7.02e-10!43;CL:0002368!2.83e-08!13;CL:0002541!3.67e-08!3;CL:0002231!1.75e-07!3;CL:0000223!3.66e-07!59 | |ontology_enrichment_celltype=CL:0000066!6.71e-20!254;CL:0002159!4.42e-10!13;CL:0002076!7.02e-10!43;CL:0002368!2.83e-08!13;CL:0002541!3.67e-08!3;CL:0002231!1.75e-07!3;CL:0000223!3.66e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002368;5.25e-12;13!CL:0002202;1.56e-11;9!CL:0002632;1.56e-11;9!CL:0002541;1.81e-09;3!CL:0000307;2.23e-09;3!CL:0002076;1.19e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.33e-13,253;CL:0002368,5.39e-12,13;CL:0002202,1.52e-11,9;CL:0002632,1.52e-11,9;CL:0002076,1.13e-10,42;CL:0002541,1.73e-09,3;CL:0000068,2.99e-09,3;CL:0000069,2.99e-09,3;CL:0000307,2.99e-09,3;CL:0000377,2.99e-09,3;CL:0000223,4.29e-09,58 | |||
|ontology_enrichment_development_v019=CL:0000377;2.23e-09;3 | |||
|ontology_enrichment_disease=DOID:305!1.89e-12!106;DOID:0050687!1.22e-08!143;DOID:1749!1.17e-07!14 | |ontology_enrichment_disease=DOID:305!1.89e-12!106;DOID:0050687!1.22e-08!143;DOID:1749!1.17e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:4468;1.27e-13;2!DOID:4929;2.88e-13;2!DOID:1749;4.09e-11;14!DOID:3112;1.79e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.35e-13,2;DOID:4929,1.86e-13,2;DOID:1749,3.60e-11,14;DOID:305,2.22e-10,106;DOID:0050687,4.53e-08,143;DOID:3112,2.17e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.16e-14!9;UBERON:0001004!1.70e-08!72;UBERON:0004119!1.89e-08!169;UBERON:0000925!1.89e-08!169;UBERON:0006595!1.89e-08!169;UBERON:0008947!2.36e-08!38;UBERON:0003258!2.36e-08!38;UBERON:0000476!3.67e-08!3;UBERON:0000920!3.67e-08!3;UBERON:0000065!4.69e-08!53;UBERON:0005631!2.07e-07!14;UBERON:0000158!2.07e-07!14;UBERON:0000064!2.54e-07!219 | |ontology_enrichment_uberon=UBERON:0001737!1.16e-14!9;UBERON:0001004!1.70e-08!72;UBERON:0004119!1.89e-08!169;UBERON:0000925!1.89e-08!169;UBERON:0006595!1.89e-08!169;UBERON:0008947!2.36e-08!38;UBERON:0003258!2.36e-08!38;UBERON:0000476!3.67e-08!3;UBERON:0000920!3.67e-08!3;UBERON:0000065!4.69e-08!53;UBERON:0005631!2.07e-07!14;UBERON:0000158!2.07e-07!14;UBERON:0000064!2.54e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.81e-09;3!UBERON:0000920;1.81e-09;3!UBERON:0000997;1.79e-07;1!UBERON:0004913;1.79e-07;1!UBERON:0005056;1.79e-07;1!UBERON:0003703;1.79e-07;1!UBERON:0004176;1.79e-07;1!UBERON:0001174;1.79e-07;1!UBERON:0004914;1.79e-07;1!UBERON:0002394;2.39e-07;4!UBERON:0003928;2.39e-07;4!UBERON:0003343;3.08e-07;4!UBERON:0004785;3.08e-07;4!UBERON:0007196;5.87e-07;15!UBERON:0001558;5.87e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.73e-09,3;UBERON:0004913,1.69e-07,1;UBERON:0003703,1.69e-07,1;UBERON:0001174,1.69e-07,1;UBERON:0004914,1.69e-07,1;UBERON:0003343,2.55e-07,4;UBERON:0004785,2.55e-07,4;UBERON:0000997,3.17e-07,1;UBERON:0005056,3.17e-07,1;UBERON:0007196,5.78e-07,15;UBERON:0001558,5.78e-07,15;UBERON:0004119,9.76e-07,160;UBERON:0000925,9.76e-07,160;UBERON:0006595,9.76e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.164201178899891,0.157421562627358,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.168584690078102,0.723033089650446,0.55146986366197,0.653638332277218,0.71181185733329,0.539325232640658,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,3.37205259772859,1.70899253099772,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.567100388969546,0.0895585227028483,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.80455823272956,0.920809889358963,0,0,0,0.451199612907412,1.30926073077505,0,0,1.79437769117889,0,0,0,0,0,0,0.509752546090077,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,1.32227932288782,0.192190067365106,0.893288987462089,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30933070541229,0,1.08890984861323,0,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,35.5170183508016,2.3874448473769,0,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,6.11104787801823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,1.5950057986596,0.732780747214898,3.73124343213044,0,0,0,0,0,0,0,0,2.10998064528027,1.63232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07791637155815,0.522355239482415,0,0,0.0967563312890851,0,0.0821154570532092,0,0,0,0,0.397429223405979,0,0,0.561111741760736,0,0,0,0.114536596165916,0,0,1.11827282008889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,5.10673006216145,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457680136793847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,2.12026975135057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,1.76665893301846,0,2.38457178078183,0,0,0,0,0,0,0,0,1.31017534008077,1.6264169483875,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,3.07303986298317,0,0,0.157115589916002,1.40136081656895,0,2.15927591218621,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0.705789743431384,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13050538903166,0,0,0,0,0,0.0717222053926763,0,0,0,0,1.79650404213174,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0.305653622991805,0.164201178899891,0.157421562627358,0,0,0,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.168584690078102,0.723033089650446,0.55146986366197,0.653638332277218,0.71181185733329,0.539325232640658,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,3.37205259772859,1.70899253099772,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0,0.567100388969546,0.0895585227028483,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,1.80455823272956,0.920809889358963,0,0,0,0.451199612907412,1.30926073077505,0,0,1.79437769117889,0,0,0,0,0,0,0.509752546090077,0,0.447749509444357,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,1.32227932288782,0.192190067365106,0.893288987462089,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30933070541229,0,1.08890984861323,0,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.96032172784825,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,35.5170183508016,2.3874448473769,0,0.921482106297696,0,0,0,0,0,0,0,0,0,0,0,6.11104787801823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,1.5950057986596,0.732780747214898,3.73124343213044,0,0,0,0,0,0,0,0,2.10998064528027,1.63232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07791637155815,0.522355239482415,0,0,0.0967563312890851,0,0.0821154570532092,0,0,0,0,0.397429223405979,0,0,0.561111741760736,0,0,0,0.114536596165916,0,0,1.11827282008889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.236417121897595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,5.10673006216145,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457680136793847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,2.12026975135057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,1.76665893301846,0,2.38457178078183,0,0,0,0,0,0,0,0,1.31017534008077,1.6264169483875,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,3.07303986298317,0,0,0.157115589916002,1.40136081656895,0,2.15927591218621,0,0,0,0,0,0,0,0,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0.705789743431384,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13050538903166,0,0,0,0,0,0.0717222053926763,0,0,0,0,1.79650404213174,0,0,0,0,0,0 | ||
|short_description=p@chr3:165178316..165178330,+ | |short_description=p@chr3:165178316..165178330,+ | ||
}} | }} |
Latest revision as of 17:55, 29 July 2015
Short description: | p@chr3:165178316..165178330, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:165178316..165178330, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.33e-13 | 253 |
respiratory epithelial cell | 5.39e-12 | 13 |
epithelial cell of tracheobronchial tree | 1.52e-11 | 9 |
epithelial cell of lower respiratory tract | 1.52e-11 | 9 |
endo-epithelial cell | 1.13e-10 | 42 |
chorionic membrane mesenchymal stem cell | 1.73e-09 | 3 |
duct epithelial cell | 2.99e-09 | 3 |
branched duct epithelial cell | 2.99e-09 | 3 |
tracheal epithelial cell | 2.99e-09 | 3 |
tracheoblast | 2.99e-09 | 3 |
endodermal cell | 4.29e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.73e-09 | 3 |
hepatopancreatic ampulla | 1.69e-07 | 1 |
extrahepatic bile duct | 1.69e-07 | 1 |
common bile duct | 1.69e-07 | 1 |
duodenal papilla | 1.69e-07 | 1 |
mucosa of oral region | 2.55e-07 | 4 |
respiratory system mucosa | 2.55e-07 | 4 |
mammalian vulva | 3.17e-07 | 1 |
external female genitalia | 3.17e-07 | 1 |
tracheobronchial tree | 5.78e-07 | 15 |
lower respiratory tract | 5.78e-07 | 15 |
endoderm-derived structure | 9.76e-07 | 160 |
endoderm | 9.76e-07 | 160 |
presumptive endoderm | 9.76e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.35e-13 | 2 |
tubular adenocarcinoma | 1.86e-13 | 2 |
squamous cell carcinoma | 3.60e-11 | 14 |
carcinoma | 2.22e-10 | 106 |
cell type cancer | 4.53e-08 | 143 |
papillary adenocarcinoma | 2.17e-07 | 1 |