FFCP PHASE1:Hg19::chr2:65216118..65216131,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6509 | |EntrezGene=6509 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10942 | |HGNC=10942 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-324bp_to_uc010fcv.2,uc010yqa.1_5end | |association_with_transcript=-324bp_to_uc010fcv.2,uc010yqa.1_5end | ||
|cluster_id=chr2:65216118..65216131,+ | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_7_at_SLC1A4_5end | |description=CAGE_peak_7_at_SLC1A4_5end | ||
|id=chr2:65216118..65216131,+ | |id=chr2:65216118..65216131,+ | ||
|ontology_enrichment_celltype=CL:0000710!3.11e-07!20 | |ontology_enrichment_celltype=CL:0000710!3.11e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000148;2.96e-40;10!CL:0002567;7.01e-35;3!CL:0000147;1.07e-28;14!CL:0000710;5.25e-20;20!CL:0000075;9.82e-15;27!CL:0002566;1.11e-12;1!CL:0002032;2.60e-12;1!CL:0000222;2.60e-12;1!CL:0000557;2.60e-12;1!CL:0002077;5.52e-10;34!CL:0000235;3.02e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.51e-40,10;CL:0000541,2.51e-40,10;CL:0002567,7.04e-35,3;CL:0000147,9.55e-29,14;CL:0000710,4.84e-20,20;CL:0000075,9.25e-15,27;CL:0002566,1.11e-12,1;CL:0002077,1.21e-11,34;CL:0000333,4.01e-09,41;CL:0000235,3.37e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;7.63e-23;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.49e-23,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.95e-11!57;UBERON:0005068!1.95e-11!57;UBERON:0006241!1.95e-11!57;UBERON:0007135!1.95e-11!57;UBERON:0002780!1.66e-10!41;UBERON:0001890!1.66e-10!41;UBERON:0006240!1.66e-10!41;UBERON:0003080!4.68e-10!42;UBERON:0002616!1.09e-09!59;UBERON:0000073!1.84e-09!94;UBERON:0001016!1.84e-09!94;UBERON:0000955!8.49e-09!69;UBERON:0006238!8.49e-09!69;UBERON:0001017!9.20e-09!82;UBERON:0003075!1.04e-08!86;UBERON:0007284!1.04e-08!86;UBERON:0005743!1.69e-08!86;UBERON:0001893!1.69e-08!34;UBERON:0001869!2.02e-08!32;UBERON:0002346!2.58e-08!90;UBERON:0002791!6.27e-08!33;UBERON:0007023!9.39e-08!115;UBERON:0002020!1.64e-07!34;UBERON:0003528!1.64e-07!34;UBERON:0002619!9.93e-07!22 | |ontology_enrichment_uberon=UBERON:0001049!1.95e-11!57;UBERON:0005068!1.95e-11!57;UBERON:0006241!1.95e-11!57;UBERON:0007135!1.95e-11!57;UBERON:0002780!1.66e-10!41;UBERON:0001890!1.66e-10!41;UBERON:0006240!1.66e-10!41;UBERON:0003080!4.68e-10!42;UBERON:0002616!1.09e-09!59;UBERON:0000073!1.84e-09!94;UBERON:0001016!1.84e-09!94;UBERON:0000955!8.49e-09!69;UBERON:0006238!8.49e-09!69;UBERON:0001017!9.20e-09!82;UBERON:0003075!1.04e-08!86;UBERON:0007284!1.04e-08!86;UBERON:0005743!1.69e-08!86;UBERON:0001893!1.69e-08!34;UBERON:0001869!2.02e-08!32;UBERON:0002346!2.58e-08!90;UBERON:0002791!6.27e-08!33;UBERON:0007023!9.39e-08!115;UBERON:0002020!1.64e-07!34;UBERON:0003528!1.64e-07!34;UBERON:0002619!9.93e-07!22 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.123121058076788,0,0.313454721478088,0,0,0.251085279189606,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0.512321413058201,0.236482229888585,0.344745680736619,0,0,0,0,0.224723484445085,0,0.641858054152187,0,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.654895377488563,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0.354668382198357,0,2.1349799145941,0.24666754841716,0,0,0,0,0,0.234321431833797,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0.168776332241266,0,0,0,0,0,0.302256294682921,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.505754070234305,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17002132569619,0.743155811443641,0,0.16798212819886,0,0,0,0,0,0.088048434013226,0,0.432359860250884,0.25248486685276,4.06386523469882,12.2236296178649,11.7217447210047,8.55362230113526,1.33675740514321,0.901029173531752,7.14566081576446,0,0,0,0,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0.336255431980582,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0.315404830067869,0.117141414992713,0.601892199455438,0,0,0,0,0,0.391602314925481,0,0,0.215714200818617,0,0,1.66435439510497,0,0.248107807818777,0,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0,0.200506470303285,0,0.114814448164607,0,0,0,0.15403067420883,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0,0,0.330569830721956,0,0,0.50578890427775,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0,0,0,0,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0.223676107892416,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0.121360521749513,0.111443384277478,0.852408440419239,0,0,0,0,0.844016498463076,0,0,0.422250816255987,0,0,0,0,0,0.311039587661807,0,0,0.511572370226872,0,0,0,0,0.185536196323703,0,0,0.0874599999961957,0,0,0,0,0,0.583209226766509,0,0,0.60298219312704,0,0.110579259931225,1.18219047581419,0.438770794307945,0,0.41827123283581,0.307801034015188,0,0.23056390438806,0.269272933229316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494255755786011,0.104421949505455,0.269604531922708,0,0.234264445725339,0.182454789215666,0.391329237864179,0,0.394584402849391,0,0,0.063186579628488,0,0.103688191397247,0,0,0.313932918407225,0,0,0,0,0,0.0870592065804026,0.17472666824203,0,0,0.0730893170861856,0,0,0.529536760149002,0.225980740780532,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.273810757783986,1.27746588066972,0,0,0,0,0.717873024576814,0,0,0.223171457441873,0.604651252380536,0.360299883542404,0,0.472699093843342,0,0.337017719270924,0.0984274815147488,0.254019996197353,0.795229689809303,0.681017030557878,0.160753148465019,0,0,0.2249738915515,0,0.668245123238271,0.335434687599266,0.0788057072991982,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0.113312091520126,0.439656701034247,0,0,0.26446520348538,0,0,0,0,0,0,0.197611631897944,0,0,0.544017803369474,0,0,0,0,0,0.610131324509816,0.250381861413,0,0,0.248385611765534,0.138348634936231,0,1.66814029295813,1.7127920012698,0.235265819698172,0,0,0,0.233713309847224,0,0,0,0,0,0.302461847526478,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0.214441591374926,0,0,0,0.244736704506468,0,0,0.219284049578707,0,0,0,0,0.345430341731199,0,0.138258436151731,0,0,0.163565394255844,0.327609848846413,0,0.211312123358627,0.39997479170986,0.106691729694141,0,0,0,0.279759015438889,0.622077260032973,0,0.107824811396682,0.786329709279482,0.109209638192014,0,0,0,0.558644917973244,0.318004350653419,0,0,0,0,0.256916900385838,0,0.319267718114302,0.205116364240755,0,0.345786262321089,0,0,0.0981477185010256,0,0.366857197043358,0,0,0,0.198916222116275,0.0752103283492573,0,0,0.261906694481422,0,0,0.337687923091973,0.781078098613847,0,0.253663240775627,0,0,0,0.175871244359621,0.383287282918786,0,0.672567444437648,0,0.227662191351298,0,0.230467975111559,0,1.08751572762931,0.526182188502793,0,0,0.156986185701028,0.942693539496011,0.280272163313789,0,0,0,0.428859265059938,0.158013611732727,0,0.173858272302579,0,0.207216164163037,0,0,0,0,0,0,0.22910686854405,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| ||
|short_description=p7@SLC1A4 | |short_description=p7@SLC1A4 | ||
}} | }} |
Latest revision as of 00:17, 18 September 2015
Short description: | p7@SLC1A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SLC1A4_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -324bp_to_uc010fcv.2, uc010yqa.1_5end |
EntrezGene: | SLC1A4 |
HGNC: | 10942 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.51e-40 | 10 |
melanoblast | 2.51e-40 | 10 |
light melanocyte | 7.04e-35 | 3 |
pigment cell | 9.55e-29 | 14 |
neurecto-epithelial cell | 4.84e-20 | 20 |
columnar/cuboidal epithelial cell | 9.25e-15 | 27 |
dark melanocyte | 1.11e-12 | 1 |
ecto-epithelial cell | 1.21e-11 | 34 |
migratory neural crest cell | 4.01e-09 | 41 |
macrophage | 3.37e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.49e-23 | 2 |