FFCP PHASE1:Hg19::chr2:46656302..46656326,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=388946 | |EntrezGene=388946 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000449601_5end | |association_with_transcript=-2bp_to_ENST00000449601_5end | ||
|cluster_id=chr2:46656302..46656326,+ | |||
|coexpression_cluster_id=C4232 | |coexpression_cluster_id=C4232 | ||
|description=CAGE_peak_1_at_LOC388946_5end | |description=CAGE_peak_1_at_LOC388946_5end | ||
|id=chr2:46656302..46656326,+ | |id=chr2:46656302..46656326,+ | ||
|ontology_enrichment_celltype=CL:0000039!1.30e-35!7;CL:0000586!1.30e-35!7;CL:0002541!9.11e-30!3 | |ontology_enrichment_celltype=CL:0000039!1.30e-35!7;CL:0000586!1.30e-35!7;CL:0002541!9.11e-30!3 | ||
|ontology_enrichment_celltype_v019=CL:0000039;6.06e-18;7!CL:0000586;6.06e-18;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.89e-18,7;CL:0000586,5.89e-18,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;8.35e-22;10!UBERON:0005564;8.35e-22;10!UBERON:0003124;1.15e-14;1 | |||
|ontology_enrichment_disease=DOID:1036!6.16e-12!8;DOID:3095!2.62e-11!22;DOID:2994!2.62e-11!22;DOID:2355!3.63e-11!1 | |ontology_enrichment_disease=DOID:1036!6.16e-12!8;DOID:3095!2.62e-11!22;DOID:2994!2.62e-11!22;DOID:2355!3.63e-11!1 | ||
|ontology_enrichment_disease_v019=DOID:1036;1.60e-15;8!DOID:2355;2.94e-14;1!DOID:74;8.89e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.64e-15,8;DOID:2355,3.15e-14,1;DOID:74,9.19e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.40e-31!8;UBERON:0000476!9.11e-30!3;UBERON:0000920!9.11e-30!3;UBERON:0003135!5.65e-23!11;UBERON:0003124!1.05e-22!7;UBERON:0000991!5.29e-12!21;UBERON:0009196!5.29e-12!21;UBERON:0009117!5.29e-12!21;UBERON:0005564!5.29e-12!21;UBERON:0005631!1.72e-11!14;UBERON:0000158!1.72e-11!14;UBERON:0004176!1.88e-11!22;UBERON:0003101!1.88e-11!22;UBERON:0000079!1.88e-11!22;UBERON:0003133!3.41e-07!48;UBERON:0000478!8.91e-07!24 | |ontology_enrichment_uberon=UBERON:0000473!1.40e-31!8;UBERON:0000476!9.11e-30!3;UBERON:0000920!9.11e-30!3;UBERON:0003135!5.65e-23!11;UBERON:0003124!1.05e-22!7;UBERON:0000991!5.29e-12!21;UBERON:0009196!5.29e-12!21;UBERON:0009117!5.29e-12!21;UBERON:0005564!5.29e-12!21;UBERON:0005631!1.72e-11!14;UBERON:0000158!1.72e-11!14;UBERON:0004176!1.88e-11!22;UBERON:0003101!1.88e-11!22;UBERON:0000079!1.88e-11!22;UBERON:0003133!3.41e-07!48;UBERON:0000478!8.91e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.73e-27;8!UBERON:0003135;7.41e-20;11!UBERON:0000991;1.53e-10;21!UBERON:0003101;4.50e-10;22!UBERON:0000079;4.50e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.48e-27,8;UBERON:0003135,7.06e-20,11;UBERON:0000991,1.49e-10,21;UBERON:0009196,1.49e-10,21;UBERON:0009117,1.49e-10,21;UBERON:0005564,1.49e-10,21;UBERON:0004176,4.40e-10,22;UBERON:0003101,4.40e-10,22;UBERON:0000079,4.40e-10,22;UBERON:0003124,1.92e-08,7;UBERON:0003133,5.87e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73290365168481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16386124460217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,13.4846494975749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0617289247165,0,0.108647371922008,0.638002319463839,0.641183153813036,1.5991043280559,0,0,0,4.28631755172643,4.90156335794349,3.02078856556517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18542664892098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3464161379693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713921808193872,5.87878291584233,4.41095517767256,0,10.3816816558988,13.6661706379651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73290365168481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16386124460217,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,13.4846494975749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0617289247165,0,0.108647371922008,0.638002319463839,0.641183153813036,1.5991043280559,0,0,0,4.28631755172643,4.90156335794349,3.02078856556517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18542664892098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3464161379693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.713921808193872,5.87878291584233,4.41095517767256,0,10.3816816558988,13.6661706379651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@LOC388946 | |short_description=p1@LOC388946 | ||
}} | }} |
Latest revision as of 10:48, 17 September 2015
Short description: | p1@LOC388946 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC388946_5end |
Coexpression cluster: | C4232_choriocarcinoma_testis_adult_chronic_placenta_testicular_chorionic |
Association with transcript: | -2bp_to_ENST00000449601_5end |
EntrezGene: | LOC388946 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.89e-18 | 7 |
germ cell | 5.89e-18 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 3.48e-27 | 8 |
male reproductive organ | 7.06e-20 | 11 |
gonad | 1.49e-10 | 21 |
indifferent external genitalia | 1.49e-10 | 21 |
indifferent gonad | 1.49e-10 | 21 |
gonad primordium | 1.49e-10 | 21 |
external genitalia | 4.40e-10 | 22 |
male organism | 4.40e-10 | 22 |
male reproductive system | 4.40e-10 | 22 |
chorion | 1.92e-08 | 7 |
reproductive organ | 5.87e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.64e-15 | 8 |
anemia | 3.15e-14 | 1 |
hematopoietic system disease | 9.19e-08 | 2 |