FFCP PHASE1:Hg19::chr19:18898325..18898337,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:18898325..18898337,-
|short_description=p2@COMP
|description=CAGE_peak_2_at_COMP_5end
|association_with_transcript=-481bp_to_ENST00000546510_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1311 | |EntrezGene=1311 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2227 | |HGNC=2227 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-481bp_to_ENST00000546510_5end | |||
|cluster_id=chr19:18898325..18898337,- | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_2_at_COMP_5end | |||
|id=chr19:18898325..18898337,- | |||
|ontology_enrichment_celltype=CL:0000136!1.19e-18!15;CL:0000153!1.12e-15!9;CL:0000447!1.12e-15!9;CL:0002334!6.26e-15!12;CL:0000057!5.38e-14!75;CL:0000667!1.27e-12!6;CL:0000058!1.27e-12!6;CL:0000138!1.27e-12!6;CL:0000055!1.34e-11!180;CL:0000135!4.45e-10!3;CL:0000386!4.45e-10!3;CL:0000388!4.45e-10!3;CL:0002615!4.58e-10!3;CL:0002580!4.58e-10!3;CL:0002620!7.91e-10!23;CL:0002579!1.01e-09!3;CL:0000327!1.20e-09!14;CL:0000499!3.05e-09!27;CL:0002617!1.90e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000153;3.80e-32;9!CL:0000447;3.80e-32;9!CL:0000136;8.05e-30;13!CL:0000138;2.91e-25;6!CL:0002334;2.13e-24;12!CL:0000499;4.28e-20;28!CL:0000135;1.57e-19;3!CL:0000388;1.57e-19;3!CL:0002615;1.73e-19;3!CL:0002580;1.73e-19;3!CL:0000327;5.66e-19;15!CL:0002579;8.60e-19;3!CL:0002617;5.33e-14;2!CL:0002521;3.90e-09;3!CL:0000214;5.97e-09;3!CL:0002616;1.07e-07;1!CL:0002581;1.25e-07;1!CL:0002591;3.84e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.71e-39,15;CL:0000153,3.23e-32,9;CL:0000447,3.23e-32,9;CL:0000058,2.32e-25,6;CL:0000138,2.32e-25,6;CL:0002334,2.13e-24,12;CL:0000499,3.98e-20,28;CL:0000135,1.57e-19,3;CL:0000388,1.57e-19,3;CL:0002615,1.68e-19,3;CL:0002580,1.68e-19,3;CL:0000327,5.14e-19,15;CL:0002579,8.87e-19,3;CL:0002617,5.51e-14,2;CL:0000134,4.86e-11,354;CL:0002320,1.03e-10,361;CL:0000219,1.45e-09,386;CL:0000057,2.51e-09,76;CL:0002521,4.15e-09,3;CL:0000048,5.19e-09,427;CL:0000214,6.22e-09,3;CL:0000723,8.35e-09,433;CL:0000034,1.54e-08,441;CL:0002616,1.03e-07,1;CL:0002581,1.25e-07,1;CL:0000151,1.99e-07,36;CL:0002591,4.61e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!4.49e-18!6;UBERON:0002358!4.49e-18!6;UBERON:0003684!4.49e-18!6;UBERON:0001178!4.49e-18!6;UBERON:0004457!5.01e-15!12;UBERON:0000042!5.01e-15!12;UBERON:0000043!4.45e-10!3;UBERON:0001443!1.45e-09!11;UBERON:0000310!1.16e-07!10;UBERON:0005406!2.73e-07!2;UBERON:0001013!3.54e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.77e-42;9!UBERON:0000042;2.77e-42;9!UBERON:0003688;1.78e-36;6!UBERON:0002358;1.78e-36;6!UBERON:0003684;1.78e-36;6!UBERON:0001178;1.78e-36;6!UBERON:0007846;1.57e-19;3!UBERON:0000043;1.57e-19;3!UBERON:0007845;1.57e-19;3!UBERON:0000310;9.16e-16;10!UBERON:0001013;3.85e-15;14!UBERON:0001443;2.60e-14;11!UBERON:0005406;1.21e-13;2!UBERON:0002190;3.90e-09;3!UBERON:0006915;5.97e-09;3!UBERON:0007616;5.97e-09;3!UBERON:0002217;5.97e-09;3!UBERON:0002018;5.97e-09;3!UBERON:0002135;3.84e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.78e-36,6;UBERON:0002358,1.78e-36,6;UBERON:0003684,1.78e-36,6;UBERON:0001178,1.78e-36,6;UBERON:0004457,1.99e-31,12;UBERON:0000042,1.99e-31,12;UBERON:0007846,1.57e-19,3;UBERON:0000043,1.57e-19,3;UBERON:0007845,1.57e-19,3;UBERON:0000310,9.17e-16,10;UBERON:0001013,3.66e-15,14;UBERON:0001443,2.60e-14,11;UBERON:0005406,1.18e-13,2;UBERON:0002384,2.86e-10,371;UBERON:0002190,4.15e-09,3;UBERON:0006915,6.22e-09,3;UBERON:0007616,6.22e-09,3;UBERON:0002217,6.22e-09,3;UBERON:0002018,6.22e-09,3;UBERON:0002135,3.62e-07,1;UBERON:0004458,7.93e-07,49 | |||
|phase1_expression=27.0700785113129,51.170025209945,5.63817616383885,59.0432460283469,18.3254048715188,21.8084631025092,27.8629865985142,0,1.30592814099919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,2.50668955317945,21.5821313251627,2.3858578411533,26.764917866645,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0,0.900273288253207,0,2.31876486041066,0.558350568994769,0.675105328965065,1.46155507741798,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902838299183157,9.09630016223939,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,9.92431231275107,17.9550508747033,48.5541963369217,3.84417447767103,6.14048698880044,5.30817939773905,19.2943486378488,0,0,0,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,14.7775344708365,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0.171986032471617,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71697852591396,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,16.3677807993371,20.3357276597824,24.659714041056,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.852935927603924,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 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|phase1_expression=27.0700785113129,51.170025209945,5.63817616383885,59.0432460283469,18.3254048715188,21.8084631025092,27.8629865985142,0,1.30592814099919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80719576192283,2.50668955317945,21.5821313251627,2.3858578411533,26.764917866645,0,0,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0,0,0.900273288253207,0,2.31876486041066,0.558350568994769,0.675105328965065,1.46155507741798,0.252433774244115,0.0920498986422993,0,0.355009592516614,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902838299183157,9.09630016223939,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,9.92431231275107,17.9550508747033,48.5541963369217,3.84417447767103,6.14048698880044,5.30817939773905,19.2943486378488,0,0,0,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0.0890320356467374,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,14.7775344708365,1.31717957183961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0.171986032471617,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71697852591396,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,16.3677807993371,20.3357276597824,24.659714041056,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,0.852935927603924,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@COMP | |||
}} | }} |
Latest revision as of 18:09, 16 September 2015
Short description: | p2@COMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COMP_5end |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | -481bp_to_ENST00000546510_5end |
EntrezGene: | COMP |
HGNC: | 2227 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.71e-39 | 15 |
GAG secreting cell | 3.23e-32 | 9 |
carbohydrate secreting cell | 3.23e-32 | 9 |
chondroblast | 2.32e-25 | 6 |
chondrocyte | 2.32e-25 | 6 |
preadipocyte | 2.13e-24 | 12 |
stromal cell | 3.98e-20 | 28 |
fibrocyte | 1.57e-19 | 3 |
tendon cell | 1.57e-19 | 3 |
adipocyte of omentum tissue | 1.68e-19 | 3 |
preadipocyte of the breast | 1.68e-19 | 3 |
extracellular matrix secreting cell | 5.14e-19 | 15 |
omentum preadipocyte | 8.87e-19 | 3 |
adipocyte of breast | 5.51e-14 | 2 |
mesenchymal cell | 4.86e-11 | 354 |
connective tissue cell | 1.03e-10 | 361 |
motile cell | 1.45e-09 | 386 |
fibroblast | 2.51e-09 | 76 |
subcutaneous fat cell | 4.15e-09 | 3 |
multi fate stem cell | 5.19e-09 | 427 |
synovial cell | 6.22e-09 | 3 |
somatic stem cell | 8.35e-09 | 433 |
stem cell | 1.54e-08 | 441 |
perirenal adipocyte cell | 1.03e-07 | 1 |
perirenal preadipocyte | 1.25e-07 | 1 |
secretory cell | 1.99e-07 | 36 |
smooth muscle cell of the pulmonary artery | 4.61e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.78e-36 | 6 |
peritoneum | 1.78e-36 | 6 |
abdominal cavity | 1.78e-36 | 6 |
visceral peritoneum | 1.78e-36 | 6 |
cavity lining | 1.99e-31 | 12 |
serous membrane | 1.99e-31 | 12 |
dense regular connective tissue | 1.57e-19 | 3 |
tendon | 1.57e-19 | 3 |
regular connective tissue | 1.57e-19 | 3 |
breast | 9.17e-16 | 10 |
adipose tissue | 3.66e-15 | 14 |
chest | 2.60e-14 | 11 |
perirenal fat | 1.18e-13 | 2 |
connective tissue | 2.86e-10 | 371 |
subcutaneous adipose tissue | 4.15e-09 | 3 |
stratified squamous epithelium | 6.22e-09 | 3 |
layer of synovial tissue | 6.22e-09 | 3 |
synovial joint | 6.22e-09 | 3 |
synovial membrane of synovial joint | 6.22e-09 | 3 |
mitral valve | 3.62e-07 | 1 |
body cavity or lining | 7.93e-07 | 49 |