FFCP PHASE1:Hg19::chr19:18897406..18897417,-: Difference between revisions
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|id=chr19:18897406..18897417,-
|short_description=p6@COMP
|description=CAGE_peak_6_at_COMP_5end
|association_with_transcript=426bp_to_ENST00000546510_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1311 | |EntrezGene=1311 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2227 | |HGNC=2227 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=426bp_to_ENST00000546510_5end | |||
|cluster_id=chr19:18897406..18897417,- | |||
|coexpression_cluster_id=C315 | |||
|description=CAGE_peak_6_at_COMP_5end | |||
|id=chr19:18897406..18897417,- | |||
|ontology_enrichment_celltype=CL:0000667!1.26e-21!6;CL:0000058!1.26e-21!6;CL:0000138!1.26e-21!6;CL:0000136!6.35e-21!15;CL:0000153!1.98e-20!9;CL:0000447!1.98e-20!9;CL:0002334!4.66e-20!12;CL:0002580!9.33e-17!3;CL:0002615!2.38e-16!3;CL:0000135!4.88e-16!3;CL:0000386!4.88e-16!3;CL:0000388!4.88e-16!3;CL:0000057!2.21e-15!75;CL:0000499!5.06e-14!27;CL:0000327!6.39e-13!14;CL:0002617!6.97e-12!2;CL:0000055!1.58e-09!180;CL:0002620!2.09e-09!23;CL:0000134!1.15e-08!358;CL:0002320!2.28e-08!365;CL:0002579!1.63e-07!3;CL:0000219!2.54e-07!390;CL:0000325!2.82e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0002580;6.53e-38;3!CL:0002615;2.02e-37;3!CL:0002617;2.96e-26;2!CL:0000136;7.02e-24;13!CL:0000153;2.34e-22;9!CL:0000447;2.34e-22;9!CL:0000138;2.27e-19;6!CL:0002334;7.89e-17;12!CL:0002581;1.42e-13;1!CL:0000327;1.52e-13;15!CL:0000499;4.33e-11;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,5.08e-38,3;CL:0002615,4.86e-37,3;CL:0002617,2.78e-26,2;CL:0000153,1.93e-22,9;CL:0000447,1.93e-22,9;CL:0000136,1.37e-20,15;CL:0000058,2.20e-19,6;CL:0000138,2.20e-19,6;CL:0002334,7.57e-17,12;CL:0000327,1.35e-13,15;CL:0002581,1.61e-13,1;CL:0000499,4.01e-11,28;CL:0000134,3.77e-07,354;CL:0002320,5.67e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!3.34e-09!5;DOID:450!3.34e-09!5;DOID:66!3.34e-09!5;DOID:423!3.34e-09!5;DOID:0080000!3.34e-09!5;DOID:11722!3.34e-09!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!3.64e-21!6;UBERON:0002358!3.64e-21!6;UBERON:0003684!3.64e-21!6;UBERON:0001178!3.64e-21!6;UBERON:0000043!4.88e-16!3;UBERON:0004457!6.61e-15!12;UBERON:0000042!6.61e-15!12;UBERON:0000310!2.62e-13!10;UBERON:0001443!4.51e-12!11;UBERON:0005406!2.44e-11!2;UBERON:0002384!9.04e-09!375;UBERON:0003978!1.48e-07!3;UBERON:0009751!1.48e-07!3;UBERON:0000946!1.48e-07!3;UBERON:0002523!1.48e-07!3;UBERON:0005983!1.48e-07!3;UBERON:0002165!1.48e-07!3;UBERON:0002062!1.48e-07!3;UBERON:0007280!1.48e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000310;2.96e-31;10!UBERON:0001443;2.00e-28;11!UBERON:0004457;4.17e-22;9!UBERON:0000042;4.17e-22;9!UBERON:0003688;4.37e-19;6!UBERON:0002358;4.37e-19;6!UBERON:0003684;4.37e-19;6!UBERON:0001178;4.37e-19;6!UBERON:0005406;1.99e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,2.53e-31,10;UBERON:0001443,1.74e-28,11;UBERON:0003688,6.74e-19,6;UBERON:0002358,6.74e-19,6;UBERON:0003684,6.74e-19,6;UBERON:0001178,6.74e-19,6;UBERON:0004457,1.34e-16,12;UBERON:0000042,1.34e-16,12;UBERON:0005406,2.12e-07,2;UBERON:0002384,9.92e-07,371 | |||
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|short_description=p6@COMP | |||
}} | }} |
Latest revision as of 18:06, 16 September 2015
Short description: | p6@COMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_COMP_5end |
Coexpression cluster: | C315_Osteoblast_Preadipocyte_mesenchymal_Smooth_Cardiac_leiomyoma_Adipocyte |
Association with transcript: | 426bp_to_ENST00000546510_5end |
EntrezGene: | COMP |
HGNC: | 2227 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 5.08e-38 | 3 |
adipocyte of omentum tissue | 4.86e-37 | 3 |
adipocyte of breast | 2.78e-26 | 2 |
GAG secreting cell | 1.93e-22 | 9 |
carbohydrate secreting cell | 1.93e-22 | 9 |
fat cell | 1.37e-20 | 15 |
chondroblast | 2.20e-19 | 6 |
chondrocyte | 2.20e-19 | 6 |
preadipocyte | 7.57e-17 | 12 |
extracellular matrix secreting cell | 1.35e-13 | 15 |
perirenal preadipocyte | 1.61e-13 | 1 |
stromal cell | 4.01e-11 | 28 |
mesenchymal cell | 3.77e-07 | 354 |
connective tissue cell | 5.67e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
breast | 2.53e-31 | 10 |
chest | 1.74e-28 | 11 |
omentum | 6.74e-19 | 6 |
peritoneum | 6.74e-19 | 6 |
abdominal cavity | 6.74e-19 | 6 |
visceral peritoneum | 6.74e-19 | 6 |
cavity lining | 1.34e-16 | 12 |
serous membrane | 1.34e-16 | 12 |
perirenal fat | 2.12e-07 | 2 |
connective tissue | 9.92e-07 | 371 |