FFCP PHASE1:Hg19::chr2:162930180..162930226,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:162930180..162930226,+ | |||
|coexpression_cluster_id=C1265 | |coexpression_cluster_id=C1265 | ||
|description=CAGE_peak_at_chr2:162930180..162930226,+ | |description=CAGE_peak_at_chr2:162930180..162930226,+ | ||
|id=chr2:162930180..162930226,+ | |id=chr2:162930180..162930226,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.08e-12!180;CL:0000680!1.40e-12!57;CL:0000056!1.40e-12!57;CL:0000355!1.40e-12!57;CL:0000187!1.25e-10!54;CL:0000393!1.26e-10!60;CL:0000211!1.26e-10!60;CL:0000222!3.70e-09!119;CL:0000183!6.99e-09!59;CL:0002494!1.19e-08!16;CL:0000192!1.64e-07!42;CL:0000514!1.64e-07!42;CL:0000048!9.04e-07!430 | |ontology_enrichment_celltype=CL:0000055!1.08e-12!180;CL:0000680!1.40e-12!57;CL:0000056!1.40e-12!57;CL:0000355!1.40e-12!57;CL:0000187!1.25e-10!54;CL:0000393!1.26e-10!60;CL:0000211!1.26e-10!60;CL:0000222!3.70e-09!119;CL:0000183!6.99e-09!59;CL:0002494!1.19e-08!16;CL:0000192!1.64e-07!42;CL:0000514!1.64e-07!42;CL:0000048!9.04e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000569;1.04e-13;4!CL:0000048;1.08e-10;58!CL:0000134;7.43e-10;55!CL:0000723;1.53e-09;61!CL:0002494;3.84e-09;16!CL:1000306;2.04e-08;4!CL:0002547;2.04e-08;4!CL:0002593;1.19e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000569,1.24e-13,4;CL:0000011,1.24e-13,4;CL:0002494,4.73e-09,16;CL:0000048,7.76e-09,427;CL:0000723,1.49e-08,433;CL:1000306,1.84e-08,4;CL:0002547,1.84e-08,4;CL:0000034,3.46e-08,441;CL:0002593,2.09e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000011;1.04e-13;4 | |||
|ontology_enrichment_disease=DOID:2394!7.44e-11!14 | |ontology_enrichment_disease=DOID:2394!7.44e-11!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.12e-26;14!DOID:120;4.70e-15;27!DOID:193;7.93e-14;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.48e-27,14;DOID:120,3.21e-15,27;DOID:193,5.58e-14,29 | |||
|ontology_enrichment_uberon=UBERON:0004290!7.09e-12!70;UBERON:0001134!1.14e-11!61;UBERON:0002036!1.14e-11!61;UBERON:0003082!1.14e-11!61;UBERON:0000486!4.28e-11!82;UBERON:0002385!6.20e-11!63;UBERON:0001015!6.20e-11!63;UBERON:0000383!6.20e-11!63;UBERON:0000914!7.32e-10!83;UBERON:0002329!7.32e-10!83;UBERON:0003077!7.32e-10!83;UBERON:0003059!7.32e-10!83;UBERON:0007282!7.32e-10!83;UBERON:0009618!7.32e-10!83;UBERON:0007285!7.32e-10!83;UBERON:0000490!8.66e-10!138;UBERON:0005256!1.99e-08!143;UBERON:0000948!7.91e-08!24;UBERON:0005498!7.91e-08!24;UBERON:0004140!7.91e-08!24;UBERON:0009881!7.91e-08!24;UBERON:0004141!7.91e-08!24;UBERON:0003084!7.91e-08!24;UBERON:0007005!7.91e-08!24;UBERON:0004139!7.91e-08!24;UBERON:0004291!7.91e-08!24;UBERON:0000992!1.44e-07!13;UBERON:0004872!8.56e-07!84 | |ontology_enrichment_uberon=UBERON:0004290!7.09e-12!70;UBERON:0001134!1.14e-11!61;UBERON:0002036!1.14e-11!61;UBERON:0003082!1.14e-11!61;UBERON:0000486!4.28e-11!82;UBERON:0002385!6.20e-11!63;UBERON:0001015!6.20e-11!63;UBERON:0000383!6.20e-11!63;UBERON:0000914!7.32e-10!83;UBERON:0002329!7.32e-10!83;UBERON:0003077!7.32e-10!83;UBERON:0003059!7.32e-10!83;UBERON:0007282!7.32e-10!83;UBERON:0009618!7.32e-10!83;UBERON:0007285!7.32e-10!83;UBERON:0000490!8.66e-10!138;UBERON:0005256!1.99e-08!143;UBERON:0000948!7.91e-08!24;UBERON:0005498!7.91e-08!24;UBERON:0004140!7.91e-08!24;UBERON:0009881!7.91e-08!24;UBERON:0004141!7.91e-08!24;UBERON:0003084!7.91e-08!24;UBERON:0007005!7.91e-08!24;UBERON:0004139!7.91e-08!24;UBERON:0004291!7.91e-08!24;UBERON:0000992!1.44e-07!13;UBERON:0004872!8.56e-07!84 | ||
|ontology_enrichment_uberon_v019=UBERON:0000992;5.68e-19;13!UBERON:0002118;1.97e-16;5!UBERON:0000991;1.25e-13;21!UBERON:0002119;1.73e-13;4!UBERON:0004797;2.04e-08;4!UBERON:0000415;2.04e-08;4!UBERON:0007240;2.04e-08;4!UBERON:0005742;2.04e-08;4!UBERON:0005734;2.04e-08;4!UBERON:0004664;2.04e-08;4!UBERON:0004663;2.04e-08;4!UBERON:0002456;1.19e-07;2!UBERON:0003134;4.39e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000992,2.73e-19,13;UBERON:0002118,6.89e-17,5;UBERON:0000991,6.76e-14,21;UBERON:0009196,6.76e-14,21;UBERON:0009117,6.76e-14,21;UBERON:0005564,6.76e-14,21;UBERON:0002119,1.66e-13,4;UBERON:0004176,3.60e-13,22;UBERON:0000415,1.84e-08,4;UBERON:0007240,1.84e-08,4;UBERON:0005742,1.84e-08,4;UBERON:0005734,1.84e-08,4;UBERON:0004664,1.84e-08,4;UBERON:0004663,1.84e-08,4;UBERON:0004458,2.92e-08,49;UBERON:0002323,1.23e-07,46;UBERON:0002456,2.09e-07,2;UBERON:0000948,2.64e-07,24;UBERON:0005498,2.64e-07,24;UBERON:0004140,2.64e-07,24;UBERON:0009881,2.64e-07,24;UBERON:0004141,2.64e-07,24;UBERON:0003084,2.64e-07,24;UBERON:0007005,2.64e-07,24;UBERON:0004139,2.64e-07,24;UBERON:0004291,2.64e-07,24;UBERON:0003133,3.30e-07,48;UBERON:0004872,3.42e-07,83;UBERON:0003134,5.82e-07,37;UBERON:0000474,5.82e-07,37;UBERON:0000926,9.71e-07,315;UBERON:0004120,9.71e-07,315;UBERON:0006603,9.71e-07,315 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0,0,0.247532705920093,0.331397375727916,0.672325146451775,1.20538905604795,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0.501559486172034,0,1.4203434172042,0,0.222820913770347,0,0.221533894583621,0,0.768547918354051,0.650296737799391,0.822189523018381,3.31620021343018,0.579606171470105,0.593146252648242,0,1.04535523804977,0.226618685395132,0.766440987203842,0.34362744548263,0.506039384039006,0.318565414324097,0,0,0.301150238155546,0.127986611154418,0,0,1.64225599384209,0.201606743224732,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.8475148341811,4.30254931123221,1.41867352879343,1.12135520028461,0,0.24666754841716,2.48968828319813,0.269421344139376,0.326923806226917,0,0,0,1.24864030732128,0,1.94283284717341,0,0.161872944368132,0.280901613404497,0.204154171254893,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,1.05965950579781,0,0.618315175430633,0.257640540045629,0.18611685633159,0,0,0,0.644349290496095,0.80823028409406,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737930631258681,0.171567810298526,0,0,0,0,0,2.07986957055916,0,0,0,0.288732895522148,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0,0,0.414656231081544,0.288239906833923,0.25248486685276,0.698476837213859,1.14596527667483,1.17217447210047,0,0.205654985406647,0.600686115687835,0,0,0,0,0.904902010304444,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0.542621605391443,0,0,0.710783897485092,0,13.2633325906218,11.3299349618038,7.19805536510811,0,0,0,0,0,0,0.579125226670317,2.26023954805422,2.32779252211864,0.112085143993527,0.197030760201927,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56390506042549,0,0,0,0.431428401637234,0,0,0,0.604780586659361,0,0,0,0.512556597022804,1.02341449813341,0,0,0.771048469013278,1.24293207719189,1.8067974323038,0.519254429183621,1.04589340613963,0.483437798366489,0,0,0.574072240823034,0.364182336013434,0.917870904715969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0.290012154876366,0.770243085573222,0.767518373630648,0.275673144969061,0,0.580066775656914,0.767039646744908,0.0890320356467374,0,0,0,0,0.464845549297286,0,0,0,0,0,0,0.143124886741991,0,0,2.09693213316207,0.255897791311334,0,1.90921948755562,0,0.539617372749944,1.37268514868027,0.706874414074119,0.808729926293264,0,1.26377536871694,0,3.1682753652067,1.05650146756755,0,1.1312434556297,1.13008116620243,0,1.32687795048244,0,0.578775534266688,0,0.202910376962704,0.6196469961995,0,0,0.0982490410131212,0,0.709522128141196,1.05553817648832,0.987884678879706,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.238231775457789,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.78093928036649,0.16480387422676,0.211125408127993,0,0.276283915531148,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455768223388005,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0.063186579628488,0,0,0,0,0,0,1.13843818411917,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0.0801588202515337,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0.160753148465019,0.137539436597234,0.415440338029185,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,1.79105763464249,1.8697064787778,4.99325275352352,0.568209015825267,2.51567901752575,3.55924488638614,1.37304041038154,6.50292972181928,1.08806040407946,3.84423389973048,2.23015474029183,3.59842489730884,1.55262956876259,1.24411862352257,0.53168342911599,0,3.60618261593324,3.80805212168795,1.62748293281865,2.54588122883583,2.25562169789226,2.78420255927096,1.99047944349308,0,0.343395705182793,0.336749488765919,0,0.57785949122191,0.214441591374926,0,0,0,0,0,0.308801447160972,0.438568099157414,0.176689145945881,0.964570191354574,0.675769762612291,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0.496211178389294,0,0,0,0,0,0,0.266107110487916,0,0.171488009437418,0,0,0,0.222462803784138,0.156986185701028,0,0.8408164899413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| ||
|short_description=p@chr2:162930180..162930226,+ | |short_description=p@chr2:162930180..162930226,+ | ||
}} | }} |
Latest revision as of 01:57, 29 July 2015
Short description: | p@chr2:162930180..162930226, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:162930180..162930226, + |
Coexpression cluster: | C1265_Fibroblast_Mesothelial_mesenchymal_anaplastic_CD4_Sertoli_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 1.24e-13 | 4 |
migratory trunk neural crest cell | 1.24e-13 | 4 |
cardiocyte | 4.73e-09 | 16 |
multi fate stem cell | 7.76e-09 | 427 |
somatic stem cell | 1.49e-08 | 433 |
fibroblast of tunica adventitia of artery | 1.84e-08 | 4 |
fibroblast of the aortic adventitia | 1.84e-08 | 4 |
stem cell | 3.46e-08 | 441 |
smooth muscle cell of the internal thoracic artery | 2.09e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
female gonad | 2.73e-19 | 13 |
right ovary | 6.89e-17 | 5 |
gonad | 6.76e-14 | 21 |
indifferent external genitalia | 6.76e-14 | 21 |
indifferent gonad | 6.76e-14 | 21 |
gonad primordium | 6.76e-14 | 21 |
left ovary | 1.66e-13 | 4 |
external genitalia | 3.60e-13 | 22 |
artery wall | 1.84e-08 | 4 |
tunica adventitia of artery | 1.84e-08 | 4 |
adventitia | 1.84e-08 | 4 |
tunica adventitia of blood vessel | 1.84e-08 | 4 |
aorta tunica adventitia | 1.84e-08 | 4 |
aorta wall | 1.84e-08 | 4 |
body cavity or lining | 2.92e-08 | 49 |
body cavity | 1.23e-07 | 46 |
internal thoracic artery | 2.09e-07 | 2 |
heart | 2.64e-07 | 24 |
primitive heart tube | 2.64e-07 | 24 |
primary heart field | 2.64e-07 | 24 |
anterior lateral plate mesoderm | 2.64e-07 | 24 |
heart tube | 2.64e-07 | 24 |
heart primordium | 2.64e-07 | 24 |
cardiac mesoderm | 2.64e-07 | 24 |
cardiogenic plate | 2.64e-07 | 24 |
heart rudiment | 2.64e-07 | 24 |
reproductive organ | 3.30e-07 | 48 |
splanchnic layer of lateral plate mesoderm | 3.42e-07 | 83 |
female reproductive organ | 5.82e-07 | 37 |
female reproductive system | 5.82e-07 | 37 |
mesoderm | 9.71e-07 | 315 |
mesoderm-derived structure | 9.71e-07 | 315 |
presumptive mesoderm | 9.71e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.48e-27 | 14 |
female reproductive organ cancer | 3.21e-15 | 27 |
reproductive organ cancer | 5.58e-14 | 29 |