FFCP PHASE1:Hg19::chr2:113979656..113979676,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:113979656..113979676,- | |||
|coexpression_cluster_id=C30 | |coexpression_cluster_id=C30 | ||
|description=CAGE_peak_at_chr2:113979656..113979676,- | |description=CAGE_peak_at_chr2:113979656..113979676,- | ||
|id=chr2:113979656..113979676,- | |id=chr2:113979656..113979676,- | ||
|ontology_enrichment_celltype=CL:0002149!2.92e-17!6;CL:0002255!2.92e-17!6;CL:0000159!1.75e-08!2 | |ontology_enrichment_celltype=CL:0002149!2.92e-17!6;CL:0002255!2.92e-17!6;CL:0000159!1.75e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002149;2.77e-27;6!CL:0002255;2.77e-27;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,2.32e-27,6;CL:0002255,2.32e-27,6 | |||
|ontology_enrichment_development_v019=UBERON:0005795;6.08e-29;10!UBERON:0007123;1.30e-15;5!UBERON:0007297;2.99e-10;2 | |||
|ontology_enrichment_disease=DOID:120!9.35e-19!27;DOID:193!2.81e-17!29;DOID:3001!2.92e-17!6;DOID:299!6.14e-17!25;DOID:4468!4.42e-09!2 | |ontology_enrichment_disease=DOID:120!9.35e-19!27;DOID:193!2.81e-17!29;DOID:3001!2.92e-17!6;DOID:299!6.14e-17!25;DOID:4468!4.42e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:3001;2.77e-27;6!DOID:299;8.25e-12;25!DOID:120;5.83e-11;27!DOID:4468;2.07e-10;2!DOID:193;3.16e-10;29 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,2.32e-27,6;DOID:299,7.58e-12,25;DOID:120,5.39e-11,27;DOID:4468,1.89e-10,2;DOID:193,2.93e-10,29 | |||
|ontology_enrichment_uberon=UBERON:0003133!4.27e-17!48;UBERON:0004175!2.85e-14!25;UBERON:0002046!1.32e-13!5;UBERON:0004117!1.32e-13!5;UBERON:0007689!1.32e-13!5;UBERON:0007123!1.32e-13!5;UBERON:0003091!1.32e-13!5;UBERON:0006947!2.97e-13!3;UBERON:0004054!2.97e-13!3;UBERON:0005156!3.28e-13!59;UBERON:0000990!3.28e-13!59;UBERON:0003134!1.45e-12!37;UBERON:0000474!1.45e-12!37;UBERON:0003100!4.30e-11!41;UBERON:0005795!1.75e-10!22;UBERON:0005904!4.81e-10!4;UBERON:0000341!2.22e-09!2;UBERON:0000489!1.18e-08!32;UBERON:0000995!2.07e-08!21;UBERON:0002113!2.19e-08!27;UBERON:0003918!2.19e-08!27;UBERON:0005095!2.19e-08!27;UBERON:0007687!2.19e-08!27;UBERON:0003975!5.55e-08!22;UBERON:0000991!6.41e-08!21;UBERON:0009196!6.41e-08!21;UBERON:0009117!6.41e-08!21;UBERON:0005564!6.41e-08!21;UBERON:0004176!1.62e-07!22;UBERON:0000992!5.13e-07!13 | |ontology_enrichment_uberon=UBERON:0003133!4.27e-17!48;UBERON:0004175!2.85e-14!25;UBERON:0002046!1.32e-13!5;UBERON:0004117!1.32e-13!5;UBERON:0007689!1.32e-13!5;UBERON:0007123!1.32e-13!5;UBERON:0003091!1.32e-13!5;UBERON:0006947!2.97e-13!3;UBERON:0004054!2.97e-13!3;UBERON:0005156!3.28e-13!59;UBERON:0000990!3.28e-13!59;UBERON:0003134!1.45e-12!37;UBERON:0000474!1.45e-12!37;UBERON:0003100!4.30e-11!41;UBERON:0005795!1.75e-10!22;UBERON:0005904!4.81e-10!4;UBERON:0000341!2.22e-09!2;UBERON:0000489!1.18e-08!32;UBERON:0000995!2.07e-08!21;UBERON:0002113!2.19e-08!27;UBERON:0003918!2.19e-08!27;UBERON:0005095!2.19e-08!27;UBERON:0007687!2.19e-08!27;UBERON:0003975!5.55e-08!22;UBERON:0000991!6.41e-08!21;UBERON:0009196!6.41e-08!21;UBERON:0009117!6.41e-08!21;UBERON:0005564!6.41e-08!21;UBERON:0004176!1.62e-07!22;UBERON:0000992!5.13e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.14e-24;3!UBERON:0004054;1.14e-24;3!UBERON:0004175;2.88e-21;21!UBERON:0005795;1.30e-19;1!UBERON:0001000;3.91e-19;1!UBERON:0001301;3.91e-19;1!UBERON:0005352;3.91e-19;1!UBERON:0005904;8.88e-19;4!UBERON:0002046;1.30e-15;5!UBERON:0000341;1.57e-10;2!UBERON:0000995;4.42e-10;17!UBERON:0003975;1.49e-09;18!UBERON:0000058;4.34e-08;10!UBERON:0003133;1.18e-07;44!UBERON:0003135;1.96e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.45e-24,3;UBERON:0004054,1.45e-24,3;UBERON:0001301,3.91e-19,1;UBERON:0001000,5.62e-19,1;UBERON:0005352,5.62e-19,1;UBERON:0005904,1.06e-18,4;UBERON:0004175,6.75e-18,25;UBERON:0002046,1.30e-15,5;UBERON:0004117,1.30e-15,5;UBERON:0007689,1.30e-15,5;UBERON:0007123,1.30e-15,5;UBERON:0003091,1.30e-15,5;UBERON:0005795,1.99e-13,22;UBERON:0000341,1.57e-10,2;UBERON:0003133,2.25e-09,48;UBERON:0000995,2.71e-08,21;UBERON:0003975,6.08e-08,22;UBERON:0005156,1.24e-07,59;UBERON:0000990,1.24e-07,59;UBERON:0009722,1.33e-07,11;UBERON:0007690,1.33e-07,11;UBERON:0003135,2.10e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.667852230137435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74297483886435,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0.853828638089378,0,1.21491816834592,0,0,1.39781334593624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28536551167675,0.734364233889974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431855182437243,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,1.8328549483524,0.31020638566432,1.91107787795487,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,17.378703496853,0,0,0.33639558774184,2.3549448562921,37.9980315241452,0,0,0,0,0,0,0,0,0.0898252021065869,0,0.122241444182866,4.06896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.667852230137435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74297483886435,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0.853828638089378,0,1.21491816834592,0,0,1.39781334593624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28536551167675,0.734364233889974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431855182437243,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,1.8328549483524,0.31020638566432,1.91107787795487,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,17.378703496853,0,0,0.33639558774184,2.3549448562921,37.9980315241452,0,0,0,0,0,0,0,0,0.0898252021065869,0,0.122241444182866,4.06896178315738,0,0,0 | ||
|short_description=p@chr2:113979656..113979676,- | |short_description=p@chr2:113979656..113979676,- | ||
}} | }} |
Latest revision as of 23:36, 28 July 2015
Short description: | p@chr2:113979656..113979676, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:113979656..113979676, - |
Coexpression cluster: | C30_thyroid_throat_mesothelioma_mucinous_trachea_chorionic_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 2.32e-27 | 6 |
stromal cell of endometrium | 2.32e-27 | 6 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 1.45e-24 | 3 |
internal male genitalia | 1.45e-24 | 3 |
epididymis | 3.91e-19 | 1 |
vas deferens | 5.62e-19 | 1 |
spermatic cord | 5.62e-19 | 1 |
duct of male reproductive system | 1.06e-18 | 4 |
internal genitalia | 6.75e-18 | 25 |
thyroid gland | 1.30e-15 | 5 |
pharyngeal pouch | 1.30e-15 | 5 |
thyroid diverticulum | 1.30e-15 | 5 |
pharyngeal pouch 2 | 1.30e-15 | 5 |
thyroid primordium | 1.30e-15 | 5 |
embryonic uterus | 1.99e-13 | 22 |
throat | 1.57e-10 | 2 |
reproductive organ | 2.25e-09 | 48 |
uterus | 2.71e-08 | 21 |
internal female genitalia | 6.08e-08 | 22 |
reproductive structure | 1.24e-07 | 59 |
reproductive system | 1.24e-07 | 59 |
entire pharyngeal arch endoderm | 1.33e-07 | 11 |
early pharyngeal endoderm | 1.33e-07 | 11 |
male reproductive organ | 2.10e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 2.32e-27 | 6 |
adenocarcinoma | 7.58e-12 | 25 |
female reproductive organ cancer | 5.39e-11 | 27 |
clear cell adenocarcinoma | 1.89e-10 | 2 |
reproductive organ cancer | 2.93e-10 | 29 |