FFCP PHASE1:Hg19::chr22:23237884..23237916,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr22:23237884..23237916,- | |||
|coexpression_cluster_id=C481 | |coexpression_cluster_id=C481 | ||
|description=CAGE_peak_at_chr22:23237884..23237916,- | |description=CAGE_peak_at_chr22:23237884..23237916,- | ||
|id=chr22:23237884..23237916,- | |id=chr22:23237884..23237916,- | ||
|ontology_enrichment_celltype=CL:0000236!1.63e-23!14;CL:0000945!1.84e-21!24;CL:0000826!1.84e-21!24;CL:0000838!2.73e-08!52;CL:0000542!4.42e-08!53;CL:0000051!4.42e-08!53 | |ontology_enrichment_celltype=CL:0000236!1.63e-23!14;CL:0000945!1.84e-21!24;CL:0000826!1.84e-21!24;CL:0000838!2.73e-08!52;CL:0000542!4.42e-08!53;CL:0000051!4.42e-08!53 | ||
|ontology_enrichment_celltype_v019=CL:0000236;6.15e-43;13!CL:0000945;1.16e-22;24!CL:0000542;1.22e-08;53!CL:0000785;2.64e-08;1!CL:0000819;2.64e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.22e-39,14;CL:0000945,1.40e-22,24;CL:0000826,1.40e-22,24;CL:0000838,1.09e-09,52;CL:0000542,1.77e-09,53;CL:0000051,1.77e-09,53;CL:0000819,2.64e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.21e-09;7!UBERON:0006298;6.75e-09;1!CL:0000051;1.22e-08;53!UBERON:0001045;1.37e-08;1!UBERON:0009143;2.64e-08;1!UBERON:0008801;2.64e-08;1 | |||
|ontology_enrichment_disease=DOID:0060058!3.59e-08!10 | |ontology_enrichment_disease=DOID:0060058!3.59e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:0060073;2.64e-08;1!DOID:8675;2.64e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,2.64e-08,1;DOID:8675,2.64e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.22e-27!115;UBERON:0002106!4.64e-11!3;UBERON:0004854!4.64e-11!3;UBERON:0009034!4.64e-11!3;UBERON:0002095!4.64e-11!3;UBERON:0004782!4.64e-11!3;UBERON:0003281!4.64e-11!3;UBERON:0009664!4.64e-11!3;UBERON:0002296!4.64e-11!3;UBERON:0005602!4.64e-11!3;UBERON:0001179!4.64e-11!3;UBERON:0006293!4.64e-11!3;UBERON:0001829!2.69e-08!2;UBERON:0004177!7.31e-08!7 | |ontology_enrichment_uberon=UBERON:0007023!3.22e-27!115;UBERON:0002106!4.64e-11!3;UBERON:0004854!4.64e-11!3;UBERON:0009034!4.64e-11!3;UBERON:0002095!4.64e-11!3;UBERON:0004782!4.64e-11!3;UBERON:0003281!4.64e-11!3;UBERON:0009664!4.64e-11!3;UBERON:0002296!4.64e-11!3;UBERON:0005602!4.64e-11!3;UBERON:0001179!4.64e-11!3;UBERON:0006293!4.64e-11!3;UBERON:0001829!2.69e-08!2;UBERON:0004177!7.31e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0001829;1.73e-15;2!UBERON:0004921;3.94e-11;33!UBERON:0002106;1.97e-10;3!UBERON:0000029;5.59e-09;1!UBERON:0002372;6.03e-09;1!UBERON:0001961;6.03e-09;1!UBERON:0001744;6.03e-09;1!UBERON:0001042;6.03e-09;1!UBERON:0001735;6.03e-09;1!UBERON:0001736;6.75e-09;1!UBERON:0001154;1.37e-08;1!UBERON:0001153;1.37e-08;1!UBERON:0009854;1.37e-08;1!UBERON:0001831;2.64e-08;1!UBERON:0002171;2.64e-08;1!UBERON:0006518;2.64e-08;1!UBERON:0008949;2.64e-08;1!UBERON:0000101;2.64e-08;1!UBERON:0001567;2.64e-08;1!UBERON:0002167;2.64e-08;1!UBERON:0001155;6.44e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,1.67e-15,2;UBERON:0007023,6.41e-15,114;UBERON:0002106,1.34e-10,3;UBERON:0004854,1.34e-10,3;UBERON:0009034,1.34e-10,3;UBERON:0002095,1.34e-10,3;UBERON:0004782,1.34e-10,3;UBERON:0003281,1.34e-10,3;UBERON:0009664,1.34e-10,3;UBERON:0002296,1.34e-10,3;UBERON:0005602,1.34e-10,3;UBERON:0001179,1.34e-10,3;UBERON:0006293,1.34e-10,3;UBERON:0005409,1.36e-09,25;UBERON:0000029,5.59e-09,1;UBERON:0002372,6.03e-09,1;UBERON:0001961,6.03e-09,1;UBERON:0001744,6.03e-09,1;UBERON:0001735,6.03e-09,1;UBERON:0001736,7.01e-09,1;UBERON:0006298,7.01e-09,1;UBERON:0001154,1.27e-08,1;UBERON:0001153,1.27e-08,1;UBERON:0001045,1.27e-08,1;UBERON:0002171,2.29e-08,1;UBERON:0006518,2.29e-08,1;UBERON:0008949,2.29e-08,1;UBERON:0000101,2.29e-08,1;UBERON:0002167,2.29e-08,1;UBERON:0001831,2.46e-08,1;UBERON:0001567,2.46e-08,1;UBERON:0008801,2.46e-08,1;UBERON:0001155,6.14e-08,9;UBERON:0004921,9.05e-08,118 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46480320348181,0.568676929949686,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.66852776159066,4.26730222566507,1.60158394814405,2.29900975981793,3.30522436392431,0.954053754535364,1.1384259382189,1.76171156811282,2.29363936875137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,1.19115887728894,0.822724546172388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,2.76283915531148,0,0,0,0,0,0,0,1.67693789582787,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,3.71521770914025,0,0,0,0,0.067401132980677,0,0,1.64209310294099,0,0,0,0,0,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16386819786103,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.533937062838473,0,1.65695622138878,14.3888146325466,4.14984426985683,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,1.64477330057155,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92935395269862,0,0,0,0,0,0,0,0,1.97366227757693,0.322289439867886,2.79835236589801,0,0,0,0,5.50475140085449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,4.4779136199206,0,0.129177819672012,0,0,0.12729431655633,0.202117188958219,0.435433495793923,0,6.26374093035664,1.43444410785353,0,0,0,0,0,0,0,0,0,1.40891655513718,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.46480320348181,0.568676929949686,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.66852776159066,4.26730222566507,1.60158394814405,2.29900975981793,3.30522436392431,0.954053754535364,1.1384259382189,1.76171156811282,2.29363936875137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,1.19115887728894,0.822724546172388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456469358066384,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,2.76283915531148,0,0,0,0,0,0,0,1.67693789582787,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,3.71521770914025,0,0,0,0,0.067401132980677,0,0,1.64209310294099,0,0,0,0,0,0.63186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16386819786103,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.533937062838473,0,1.65695622138878,14.3888146325466,4.14984426985683,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,1.64477330057155,0.992422356778588,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92935395269862,0,0,0,0,0,0,0,0,1.97366227757693,0.322289439867886,2.79835236589801,0,0,0,0,5.50475140085449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,4.4779136199206,0,0.129177819672012,0,0,0.12729431655633,0.202117188958219,0.435433495793923,0,6.26374093035664,1.43444410785353,0,0,0,0,0,0,0,0,0,1.40891655513718,0 | ||
|short_description=p@chr22:23237884..23237916,- | |short_description=p@chr22:23237884..23237916,- | ||
}} | }} |
Latest revision as of 19:27, 28 July 2015
Short description: | p@chr22:23237884..23237916, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:23237884..23237916, - |
Coexpression cluster: | C481_lymph_vein_tonsil_appendix_submaxillary_trachea_temporal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.22e-39 | 14 |
lymphocyte of B lineage | 1.40e-22 | 24 |
pro-B cell | 1.40e-22 | 24 |
lymphoid lineage restricted progenitor cell | 1.09e-09 | 52 |
lymphocyte | 1.77e-09 | 53 |
common lymphoid progenitor | 1.77e-09 | 53 |
B-1 B cell | 2.64e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 1.67e-15 | 2 |
adult organism | 6.41e-15 | 114 |
spleen | 1.34e-10 | 3 |
gastrointestinal system mesentery | 1.34e-10 | 3 |
stomach region | 1.34e-10 | 3 |
mesentery | 1.34e-10 | 3 |
gastrointestinal system serosa | 1.34e-10 | 3 |
mesentery of stomach | 1.34e-10 | 3 |
gut mesentery | 1.34e-10 | 3 |
dorsal mesentery | 1.34e-10 | 3 |
dorsal mesogastrium | 1.34e-10 | 3 |
peritoneal cavity | 1.34e-10 | 3 |
spleen primordium | 1.34e-10 | 3 |
gastrointestinal system | 1.36e-09 | 25 |
lymph node | 5.59e-09 | 1 |
tonsil | 6.03e-09 | 1 |
mucosa-associated lymphoid tissue | 6.03e-09 | 1 |
lymphoid tissue | 6.03e-09 | 1 |
tonsillar ring | 6.03e-09 | 1 |
submandibular gland | 7.01e-09 | 1 |
submandibular gland primordium | 7.01e-09 | 1 |
vermiform appendix | 1.27e-08 | 1 |
caecum | 1.27e-08 | 1 |
midgut | 1.27e-08 | 1 |
lower lobe of right lung | 2.29e-08 | 1 |
right lung lobe | 2.29e-08 | 1 |
lower lobe of lung | 2.29e-08 | 1 |
lobe of lung | 2.29e-08 | 1 |
right lung | 2.29e-08 | 1 |
parotid gland | 2.46e-08 | 1 |
cheek | 2.46e-08 | 1 |
parotid gland primordium | 2.46e-08 | 1 |
colon | 6.14e-08 | 9 |
subdivision of digestive tract | 9.05e-08 | 118 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 2.64e-08 | 1 |
lymphosarcoma | 2.64e-08 | 1 |