FFCP PHASE1:Hg19::chr20:61298021..61298038,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=37bp_to_ENST00000411824_5end | |association_with_transcript=37bp_to_ENST00000411824_5end | ||
|cluster_id=chr20:61298021..61298038,- | |||
|coexpression_cluster_id=C1872 | |coexpression_cluster_id=C1872 | ||
|description=CAGE_peak_1_at_ENST00000411824_5end | |description=CAGE_peak_1_at_ENST00000411824_5end | ||
|id=chr20:61298021..61298038,- | |id=chr20:61298021..61298038,- | ||
|ontology_enrichment_celltype=CL:0000148!1.16e-17!10;CL:0000541!1.16e-17!10;CL:0000147!2.77e-12!14;CL:0002567!4.78e-12!3;CL:0000710!2.96e-08!20 | |ontology_enrichment_celltype=CL:0000148!1.16e-17!10;CL:0000541!1.16e-17!10;CL:0000147!2.77e-12!14;CL:0002567!4.78e-12!3;CL:0000710!2.96e-08!20 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.30e-44;10!CL:0000147;1.06e-31;14!CL:0002567;1.63e-28;3!CL:0000710;5.33e-22;20!CL:0000075;4.06e-16;27!CL:0002077;2.74e-11;34!CL:0002566;9.83e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.35e-44,10;CL:0000541,1.35e-44,10;CL:0000147,1.09e-31,14;CL:0002567,1.71e-28,3;CL:0000710,5.42e-22,20;CL:0000075,4.11e-16,27;CL:0002077,1.20e-12,34;CL:0002566,9.84e-11,1;CL:0000333,7.64e-10,41 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.70e-13;3!UBERON:0008801;1.37e-10;1!UBERON:0006298;1.65e-10;1!UBERON:0006242;3.61e-10;1!UBERON:0005425;3.61e-10;1 | |||
|ontology_enrichment_disease=DOID:3493!1.71e-08!2;DOID:1909!6.77e-08!2 | |ontology_enrichment_disease=DOID:3493!1.71e-08!2;DOID:1909!6.77e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:3493;3.13e-19;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.38e-19,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001829;2.38e-19;2!UBERON:0001044;2.56e-14;6!UBERON:0003293;2.56e-14;6!UBERON:0003294;2.56e-14;6!UBERON:0010047;2.56e-14;6!UBERON:0003408;2.56e-14;6!UBERON:0000167;2.56e-14;6!UBERON:0001041;9.20e-11;14!UBERON:0001831;1.37e-10;1!UBERON:0001567;1.37e-10;1!UBERON:0001736;1.65e-10;1!UBERON:0002038;3.61e-10;1!UBERON:0000941;3.61e-10;1!UBERON:0001785;3.61e-10;1!UBERON:0002464;3.61e-10;1!UBERON:0004904;3.61e-10;1!UBERON:0001021;3.61e-10;1!UBERON:0009661;3.61e-10;1!UBERON:0002950;3.61e-10;1!UBERON:0001891;3.61e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,2.17e-19,2;UBERON:0001044,2.39e-14,6;UBERON:0003293,2.39e-14,6;UBERON:0003294,2.39e-14,6;UBERON:0010047,2.39e-14,6;UBERON:0000167,2.39e-14,6;UBERON:0001831,1.30e-10,1;UBERON:0001567,1.30e-10,1;UBERON:0008801,1.30e-10,1;UBERON:0001736,1.57e-10,1;UBERON:0006298,1.57e-10,1;UBERON:0000941,3.29e-10,1;UBERON:0001785,3.29e-10,1;UBERON:0002464,3.29e-10,1;UBERON:0004904,3.29e-10,1;UBERON:0001021,3.29e-10,1;UBERON:0003902,3.29e-10,1;UBERON:0005425,3.29e-10,1;UBERON:0002038,3.61e-10,1;UBERON:0009661,3.61e-10,1;UBERON:0002950,3.61e-10,1;UBERON:0001891,3.61e-10,1;UBERON:0009616,3.61e-10,1;UBERON:0010286,3.61e-10,1;UBERON:0003408,8.05e-09,10;UBERON:0000966,5.75e-07,6;UBERON:0005388,5.75e-07,6;UBERON:0001802,5.75e-07,6 | |||
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| ||
|short_description=p1@ENST00000411824 | |short_description=p1@ENST00000411824 | ||
}} | }} |
Latest revision as of 16:12, 28 July 2015
Short description: | p1@ENST00000411824 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000411824_5end |
Coexpression cluster: | C1872_signet_Melanocyte_large_parotid_submaxillary_salivary_retina |
Association with transcript: | 37bp_to_ENST00000411824_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.35e-44 | 10 |
melanoblast | 1.35e-44 | 10 |
pigment cell | 1.09e-31 | 14 |
light melanocyte | 1.71e-28 | 3 |
neurecto-epithelial cell | 5.42e-22 | 20 |
columnar/cuboidal epithelial cell | 4.11e-16 | 27 |
ecto-epithelial cell | 1.20e-12 | 34 |
dark melanocyte | 9.84e-11 | 1 |
migratory neural crest cell | 7.64e-10 | 41 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 2.17e-19 | 2 |
saliva-secreting gland | 2.39e-14 | 6 |
gland of oral region | 2.39e-14 | 6 |
gland of foregut | 2.39e-14 | 6 |
oral gland | 2.39e-14 | 6 |
oral cavity | 2.39e-14 | 6 |
parotid gland | 1.30e-10 | 1 |
cheek | 1.30e-10 | 1 |
parotid gland primordium | 1.30e-10 | 1 |
submandibular gland | 1.57e-10 | 1 |
submandibular gland primordium | 1.57e-10 | 1 |
cranial nerve II | 3.29e-10 | 1 |
cranial nerve | 3.29e-10 | 1 |
nerve trunk | 3.29e-10 | 1 |
nerve connecting eye with brain | 3.29e-10 | 1 |
nerve | 3.29e-10 | 1 |
retinal neural layer | 3.29e-10 | 1 |
presumptive neural retina | 3.29e-10 | 1 |
substantia nigra | 3.61e-10 | 1 |
midbrain nucleus | 3.61e-10 | 1 |
regional part of midbrain | 3.61e-10 | 1 |
midbrain | 3.61e-10 | 1 |
presumptive midbrain | 3.61e-10 | 1 |
midbrain neural tube | 3.61e-10 | 1 |
gland of gut | 8.05e-09 | 10 |
retina | 5.75e-07 | 6 |
photoreceptor array | 5.75e-07 | 6 |
posterior segment of eyeball | 5.75e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.38e-19 | 2 |