FFCP PHASE1:Hg19::chr20:3993560..3993585,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:3993560..3993585,+ | |||
|coexpression_cluster_id=C344 | |coexpression_cluster_id=C344 | ||
|description=CAGE_peak_at_chr20:3993560..3993585,+ | |description=CAGE_peak_at_chr20:3993560..3993585,+ | ||
|id=chr20:3993560..3993585,+ | |id=chr20:3993560..3993585,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.63e-77!42;CL:0000860!1.21e-71!45;CL:0000766!8.99e-55!76;CL:0002194!4.05e-48!63;CL:0000576!4.05e-48!63;CL:0000040!4.05e-48!63;CL:0000559!4.05e-48!63;CL:0002009!1.97e-46!65;CL:0000839!1.26e-42!70;CL:0000557!6.26e-42!71;CL:0000763!1.96e-41!112;CL:0000049!1.96e-41!112;CL:0000738!4.85e-26!140;CL:0002032!2.47e-25!165;CL:0000837!2.47e-25!165;CL:0000037!6.03e-24!172;CL:0000566!6.03e-24!172;CL:0002087!3.75e-22!119;CL:0000988!3.79e-22!182;CL:0002031!5.71e-21!124;CL:0000094!1.55e-12!8;CL:0000081!5.07e-09!11;CL:0002320!1.14e-08!365;CL:0000134!2.50e-08!358;CL:0000219!7.60e-07!390 | |ontology_enrichment_celltype=CL:0002057!2.63e-77!42;CL:0000860!1.21e-71!45;CL:0000766!8.99e-55!76;CL:0002194!4.05e-48!63;CL:0000576!4.05e-48!63;CL:0000040!4.05e-48!63;CL:0000559!4.05e-48!63;CL:0002009!1.97e-46!65;CL:0000839!1.26e-42!70;CL:0000557!6.26e-42!71;CL:0000763!1.96e-41!112;CL:0000049!1.96e-41!112;CL:0000738!4.85e-26!140;CL:0002032!2.47e-25!165;CL:0000837!2.47e-25!165;CL:0000037!6.03e-24!172;CL:0000566!6.03e-24!172;CL:0002087!3.75e-22!119;CL:0000988!3.79e-22!182;CL:0002031!5.71e-21!124;CL:0000094!1.55e-12!8;CL:0000081!5.07e-09!11;CL:0002320!1.14e-08!365;CL:0000134!2.50e-08!358;CL:0000219!7.60e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.19e-47;33!CL:0002057;1.19e-47;33!CL:0000473;4.74e-31;39!CL:0000234;4.74e-31;39!CL:0000576;1.59e-28;48!CL:0000766;5.35e-21;69!CL:0000775;3.64e-14;3!CL:0000094;1.71e-11;8!CL:0000763;1.99e-09;100!CL:0000081;1.70e-08;11!CL:0002087;4.88e-07;104!CL:0000738;8.18e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.54e-48,42;CL:0002057,1.54e-48,42;CL:0000473,3.39e-42,48;CL:0000234,3.39e-42,48;CL:0000766,1.25e-39,72;CL:0002194,2.62e-33,59;CL:0000576,2.62e-33,59;CL:0000040,2.62e-33,59;CL:0000559,2.62e-33,59;CL:0002009,3.68e-32,61;CL:0000839,1.37e-29,66;CL:0000557,4.03e-29,67;CL:0000763,1.11e-25,108;CL:0000049,1.11e-25,108;CL:0000738,6.97e-20,136;CL:0002032,2.16e-16,161;CL:0000837,2.16e-16,161;CL:0002087,4.25e-16,115;CL:0000037,1.34e-15,168;CL:0002031,2.47e-15,120;CL:0000988,1.14e-14,177;CL:0000775,3.88e-14,3;CL:0000094,1.74e-11,8;CL:0000081,1.72e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;3.28e-36;42!CL:0000049;4.80e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.31e-41!102;UBERON:0003061!4.31e-41!102;UBERON:0002193!1.10e-36!112;UBERON:0002371!1.98e-36!80;UBERON:0001474!2.14e-33!86;UBERON:0004765!2.22e-27!101;UBERON:0001434!2.22e-27!101;UBERON:0002405!5.12e-25!115;UBERON:0003081!4.60e-16!216;UBERON:0002204!9.84e-14!167;UBERON:0002384!3.37e-08!375 | |ontology_enrichment_uberon=UBERON:0002390!4.31e-41!102;UBERON:0003061!4.31e-41!102;UBERON:0002193!1.10e-36!112;UBERON:0002371!1.98e-36!80;UBERON:0001474!2.14e-33!86;UBERON:0004765!2.22e-27!101;UBERON:0001434!2.22e-27!101;UBERON:0002405!5.12e-25!115;UBERON:0003081!4.60e-16!216;UBERON:0002204!9.84e-14!167;UBERON:0002384!3.37e-08!375 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.68e-28,98;UBERON:0003061,2.68e-28,98;UBERON:0002193,1.85e-25,108;UBERON:0002371,1.90e-25,76;UBERON:0001474,1.93e-23,82;UBERON:0004765,3.57e-21,90;UBERON:0002405,2.01e-20,93;UBERON:0001434,7.64e-19,100;UBERON:0003081,2.52e-12,203;UBERON:0002204,2.32e-10,167;UBERON:0000926,6.31e-07,315;UBERON:0004120,6.31e-07,315;UBERON:0006603,6.31e-07,315 | |||
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|short_description=p@chr20:3993560..3993585,+ | |short_description=p@chr20:3993560..3993585,+ | ||
}} | }} |
Latest revision as of 14:02, 28 July 2015
Short description: | p@chr20:3993560..3993585, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:3993560..3993585, + |
Coexpression cluster: | C344_Neutrophils_CD14_Eosinophils_Whole_blood_CD14CD16_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.54e-48 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.54e-48 | 42 |
defensive cell | 3.39e-42 | 48 |
phagocyte | 3.39e-42 | 48 |
myeloid leukocyte | 1.25e-39 | 72 |
monopoietic cell | 2.62e-33 | 59 |
monocyte | 2.62e-33 | 59 |
monoblast | 2.62e-33 | 59 |
promonocyte | 2.62e-33 | 59 |
macrophage dendritic cell progenitor | 3.68e-32 | 61 |
myeloid lineage restricted progenitor cell | 1.37e-29 | 66 |
granulocyte monocyte progenitor cell | 4.03e-29 | 67 |
myeloid cell | 1.11e-25 | 108 |
common myeloid progenitor | 1.11e-25 | 108 |
leukocyte | 6.97e-20 | 136 |
hematopoietic oligopotent progenitor cell | 2.16e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.16e-16 | 161 |
nongranular leukocyte | 4.25e-16 | 115 |
hematopoietic stem cell | 1.34e-15 | 168 |
hematopoietic lineage restricted progenitor cell | 2.47e-15 | 120 |
hematopoietic cell | 1.14e-14 | 177 |
neutrophil | 3.88e-14 | 3 |
granulocyte | 1.74e-11 | 8 |
blood cell | 1.72e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.68e-28 | 98 |
blood island | 2.68e-28 | 98 |
hemolymphoid system | 1.85e-25 | 108 |
bone marrow | 1.90e-25 | 76 |
bone element | 1.93e-23 | 82 |
skeletal element | 3.57e-21 | 90 |
immune system | 2.01e-20 | 93 |
skeletal system | 7.64e-19 | 100 |
lateral plate mesoderm | 2.52e-12 | 203 |
musculoskeletal system | 2.32e-10 | 167 |
mesoderm | 6.31e-07 | 315 |
mesoderm-derived structure | 6.31e-07 | 315 |
presumptive mesoderm | 6.31e-07 | 315 |