FFCP PHASE1:Hg19::chr1:33430513..33430536,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=127544 | |EntrezGene=127544 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26886 | |HGNC=26886 | ||
|TSSclassifier=strong | |||
|UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | |UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | ||
|association_with_transcript=-227bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | |association_with_transcript=-227bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | ||
|cluster_id=chr1:33430513..33430536,- | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_4_at_RNF19B_5end | |description=CAGE_peak_4_at_RNF19B_5end | ||
|id=chr1:33430513..33430536,- | |id=chr1:33430513..33430536,- | ||
|ontology_enrichment_celltype=CL:0002057!1.38e-20!42;CL:0000860!2.47e-17!45;CL:0000766!1.79e-14!76;CL:0000738!2.28e-13!140;CL:0000557!1.66e-11!71;CL:0002009!2.60e-11!65;CL:0002194!1.39e-10!63;CL:0000576!1.39e-10!63;CL:0000040!1.39e-10!63;CL:0000559!1.39e-10!63;CL:0000839!3.16e-09!70;CL:0002087!5.31e-09!119;CL:0002031!2.28e-08!124;CL:0000037!5.15e-07!172;CL:0000566!5.15e-07!172;CL:0000094!6.03e-07!8;CL:0000988!8.77e-07!182 | |ontology_enrichment_celltype=CL:0002057!1.38e-20!42;CL:0000860!2.47e-17!45;CL:0000766!1.79e-14!76;CL:0000738!2.28e-13!140;CL:0000557!1.66e-11!71;CL:0002009!2.60e-11!65;CL:0002194!1.39e-10!63;CL:0000576!1.39e-10!63;CL:0000040!1.39e-10!63;CL:0000559!1.39e-10!63;CL:0000839!3.16e-09!70;CL:0002087!5.31e-09!119;CL:0002031!2.28e-08!124;CL:0000037!5.15e-07!172;CL:0000566!5.15e-07!172;CL:0000094!6.03e-07!8;CL:0000988!8.77e-07!182 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.12e-24;33!CL:0002057;3.12e-24;33!CL:0000473;2.33e-16;39!CL:0000234;2.33e-16;39!CL:0000576;1.24e-13;48!CL:0000766;6.95e-11;69!CL:0000094;2.72e-09;8!CL:0000081;4.58e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.87e-27,42;CL:0002057,5.87e-27,42;CL:0000473,8.46e-23,48;CL:0000234,8.46e-23,48;CL:0000766,4.48e-22,72;CL:0000738,1.62e-18,136;CL:0002009,6.66e-18,61;CL:0000557,1.37e-17,67;CL:0002194,8.46e-17,59;CL:0000576,8.46e-17,59;CL:0000040,8.46e-17,59;CL:0000559,8.46e-17,59;CL:0000839,5.77e-15,66;CL:0002087,8.24e-13,115;CL:0000763,1.14e-12,108;CL:0000049,1.14e-12,108;CL:0000037,4.25e-12,168;CL:0002031,7.14e-12,120;CL:0000988,1.02e-11,177;CL:0002032,1.12e-10,161;CL:0000837,1.12e-10,161;CL:0000094,3.16e-09,8;CL:0000081,6.68e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;1.63e-19;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.57e-11!115;UBERON:0001017!5.57e-11!82;UBERON:0005743!1.60e-10!86;UBERON:0002616!1.73e-10!59;UBERON:0001049!2.32e-10!57;UBERON:0005068!2.32e-10!57;UBERON:0006241!2.32e-10!57;UBERON:0007135!2.32e-10!57;UBERON:0000955!7.37e-10!69;UBERON:0006238!7.37e-10!69;UBERON:0002193!9.45e-10!112;UBERON:0001893!1.98e-09!34;UBERON:0002390!3.63e-09!102;UBERON:0003061!3.63e-09!102;UBERON:0002020!4.53e-09!34;UBERON:0003528!4.53e-09!34;UBERON:0000073!5.54e-09!94;UBERON:0001016!5.54e-09!94;UBERON:0002791!5.93e-09!33;UBERON:0001869!7.78e-09!32;UBERON:0003080!1.07e-08!42;UBERON:0002371!1.40e-08!80;UBERON:0001474!1.70e-08!86;UBERON:0002619!2.22e-08!22;UBERON:0002780!2.45e-08!41;UBERON:0001890!2.45e-08!41;UBERON:0006240!2.45e-08!41;UBERON:0002346!3.13e-08!90;UBERON:0003075!5.31e-08!86;UBERON:0007284!5.31e-08!86;UBERON:0001950!8.39e-08!20;UBERON:0000956!1.26e-07!25;UBERON:0000203!1.26e-07!25;UBERON:0004765!1.41e-07!101;UBERON:0001434!1.41e-07!101;UBERON:0002405!8.30e-07!115 | |ontology_enrichment_uberon=UBERON:0007023!3.57e-11!115;UBERON:0001017!5.57e-11!82;UBERON:0005743!1.60e-10!86;UBERON:0002616!1.73e-10!59;UBERON:0001049!2.32e-10!57;UBERON:0005068!2.32e-10!57;UBERON:0006241!2.32e-10!57;UBERON:0007135!2.32e-10!57;UBERON:0000955!7.37e-10!69;UBERON:0006238!7.37e-10!69;UBERON:0002193!9.45e-10!112;UBERON:0001893!1.98e-09!34;UBERON:0002390!3.63e-09!102;UBERON:0003061!3.63e-09!102;UBERON:0002020!4.53e-09!34;UBERON:0003528!4.53e-09!34;UBERON:0000073!5.54e-09!94;UBERON:0001016!5.54e-09!94;UBERON:0002791!5.93e-09!33;UBERON:0001869!7.78e-09!32;UBERON:0003080!1.07e-08!42;UBERON:0002371!1.40e-08!80;UBERON:0001474!1.70e-08!86;UBERON:0002619!2.22e-08!22;UBERON:0002780!2.45e-08!41;UBERON:0001890!2.45e-08!41;UBERON:0006240!2.45e-08!41;UBERON:0002346!3.13e-08!90;UBERON:0003075!5.31e-08!86;UBERON:0007284!5.31e-08!86;UBERON:0001950!8.39e-08!20;UBERON:0000956!1.26e-07!25;UBERON:0000203!1.26e-07!25;UBERON:0004765!1.41e-07!101;UBERON:0001434!1.41e-07!101;UBERON:0002405!8.30e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;6.52e-12;22!UBERON:0001950;2.36e-11;20!UBERON:0000956;1.24e-10;25!UBERON:0000203;1.24e-10;25!UBERON:0001893;1.76e-10;34!UBERON:0001869;2.67e-10;32!UBERON:0003528;4.15e-10;34!UBERON:0002020;4.15e-10;34!UBERON:0002791;7.79e-10;32!UBERON:0000073;3.12e-09;53!UBERON:0002616;3.12e-09;53!UBERON:0002780;6.09e-09;41!UBERON:0001890;6.09e-09;41!UBERON:0000955;7.55e-07;68 | |||
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| ||
|short_description=p4@RNF19B | |short_description=p4@RNF19B | ||
}} | }} |
Latest revision as of 16:29, 17 September 2015
Short description: | p4@RNF19B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RNF19B_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -227bp_to_ENST00000235150, ENST00000356990, ENST00000373456, ENST00000405457, NM_001127361, NM_153341, uc001bwm.3, uc010oho.1, uc010ohp.1_5end |
EntrezGene: | RNF19B |
HGNC: | 26886 |
UniProt: | G3XA82E9PAW6Q6ZMZ0F5GY25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.87e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.87e-27 | 42 |
defensive cell | 8.46e-23 | 48 |
phagocyte | 8.46e-23 | 48 |
myeloid leukocyte | 4.48e-22 | 72 |
leukocyte | 1.62e-18 | 136 |
macrophage dendritic cell progenitor | 6.66e-18 | 61 |
granulocyte monocyte progenitor cell | 1.37e-17 | 67 |
monopoietic cell | 8.46e-17 | 59 |
monocyte | 8.46e-17 | 59 |
monoblast | 8.46e-17 | 59 |
promonocyte | 8.46e-17 | 59 |
myeloid lineage restricted progenitor cell | 5.77e-15 | 66 |
nongranular leukocyte | 8.24e-13 | 115 |
myeloid cell | 1.14e-12 | 108 |
common myeloid progenitor | 1.14e-12 | 108 |
hematopoietic stem cell | 4.25e-12 | 168 |
hematopoietic lineage restricted progenitor cell | 7.14e-12 | 120 |
hematopoietic cell | 1.02e-11 | 177 |
hematopoietic oligopotent progenitor cell | 1.12e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.12e-10 | 161 |
granulocyte | 3.16e-09 | 8 |
blood cell | 6.68e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.38e-14 | 98 |
blood island | 2.38e-14 | 98 |
regional part of nervous system | 3.14e-14 | 53 |
regional part of brain | 3.14e-14 | 53 |
bone marrow | 3.52e-14 | 76 |
hemolymphoid system | 5.19e-14 | 108 |
neural tube | 1.87e-13 | 56 |
neural rod | 1.87e-13 | 56 |
future spinal cord | 1.87e-13 | 56 |
neural keel | 1.87e-13 | 56 |
bone element | 3.86e-13 | 82 |
central nervous system | 4.07e-13 | 81 |
adult organism | 4.63e-13 | 114 |
telencephalon | 1.30e-12 | 34 |
regional part of cerebral cortex | 1.31e-12 | 22 |
brain | 1.90e-12 | 68 |
future brain | 1.90e-12 | 68 |
immune system | 3.32e-12 | 93 |
brain grey matter | 4.20e-12 | 34 |
gray matter | 4.20e-12 | 34 |
neocortex | 8.54e-12 | 20 |
cerebral hemisphere | 9.09e-12 | 32 |
skeletal element | 9.16e-12 | 90 |
nervous system | 1.58e-11 | 89 |
regional part of telencephalon | 2.16e-11 | 32 |
regional part of forebrain | 2.61e-11 | 41 |
forebrain | 2.61e-11 | 41 |
anterior neural tube | 2.61e-11 | 41 |
future forebrain | 2.61e-11 | 41 |
cerebral cortex | 2.82e-11 | 25 |
pallium | 2.82e-11 | 25 |
skeletal system | 4.39e-10 | 100 |
neurectoderm | 2.25e-09 | 86 |
neural plate | 3.26e-09 | 82 |
presumptive neural plate | 3.26e-09 | 82 |
pre-chordal neural plate | 2.98e-07 | 61 |