FFCP PHASE1:Hg19::chr1:33430472..33430509,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=127544 | |EntrezGene=127544 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26886 | |HGNC=26886 | ||
|TSSclassifier=strong | |||
|UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | |UniProt=G3XA82,E9PAW6,Q6ZMZ0,F5GY25 | ||
|association_with_transcript=-186bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | |association_with_transcript=-186bp_to_ENST00000235150,ENST00000356990,ENST00000373456,ENST00000405457,NM_001127361,NM_153341,uc001bwm.3,uc010oho.1,uc010ohp.1_5end | ||
|cluster_id=chr1:33430472..33430509,- | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_2_at_RNF19B_5end | |description=CAGE_peak_2_at_RNF19B_5end | ||
|id=chr1:33430472..33430509,- | |id=chr1:33430472..33430509,- | ||
|ontology_enrichment_celltype=CL:0000766!1.02e-23!76;CL:0002057!1.33e-23!42;CL:0000860!1.68e-20!45;CL:0000557!3.88e-20!71;CL:0002009!1.06e-19!65;CL:0002194!1.02e-18!63;CL:0000576!1.02e-18!63;CL:0000040!1.02e-18!63;CL:0000559!1.02e-18!63;CL:0000738!4.41e-18!140;CL:0000839!3.50e-17!70;CL:0000763!2.65e-12!112;CL:0000049!2.65e-12!112;CL:0002087!5.86e-12!119;CL:0002031!1.30e-11!124;CL:0000037!8.35e-10!172;CL:0000566!8.35e-10!172;CL:0000988!1.10e-09!182;CL:0002032!6.44e-09!165;CL:0000837!6.44e-09!165 | |ontology_enrichment_celltype=CL:0000766!1.02e-23!76;CL:0002057!1.33e-23!42;CL:0000860!1.68e-20!45;CL:0000557!3.88e-20!71;CL:0002009!1.06e-19!65;CL:0002194!1.02e-18!63;CL:0000576!1.02e-18!63;CL:0000040!1.02e-18!63;CL:0000559!1.02e-18!63;CL:0000738!4.41e-18!140;CL:0000839!3.50e-17!70;CL:0000763!2.65e-12!112;CL:0000049!2.65e-12!112;CL:0002087!5.86e-12!119;CL:0002031!1.30e-11!124;CL:0000037!8.35e-10!172;CL:0000566!8.35e-10!172;CL:0000988!1.10e-09!182;CL:0002032!6.44e-09!165;CL:0000837!6.44e-09!165 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.35e-20;33!CL:0002057;1.35e-20;33!CL:0000473;6.93e-17;39!CL:0000234;6.93e-17;39!CL:0000576;2.36e-14;48!CL:0000766;7.41e-12;69!CL:0000094;6.78e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.44e-27,72;CL:0000860,9.23e-24,42;CL:0002057,9.23e-24,42;CL:0000473,1.18e-23,48;CL:0000234,1.18e-23,48;CL:0000557,4.73e-23,67;CL:0002009,9.35e-23,61;CL:0002194,1.01e-21,59;CL:0000576,1.01e-21,59;CL:0000040,1.01e-21,59;CL:0000559,1.01e-21,59;CL:0000839,8.32e-20,66;CL:0000738,8.91e-20,136;CL:0000763,6.73e-14,108;CL:0000049,6.73e-14,108;CL:0002087,2.36e-13,115;CL:0002031,4.92e-13,120;CL:0000037,7.50e-11,168;CL:0000988,2.89e-10,177;CL:0002032,6.41e-10,161;CL:0000837,6.41e-10,161;CL:0000094,9.76e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;7.61e-18;42 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.94e-19!102;UBERON:0003061!2.94e-19!102;UBERON:0002193!1.01e-18!112;UBERON:0002371!8.77e-15!80;UBERON:0007023!1.99e-14!115;UBERON:0001474!4.00e-13!86;UBERON:0001049!1.35e-12!57;UBERON:0005068!1.35e-12!57;UBERON:0006241!1.35e-12!57;UBERON:0007135!1.35e-12!57;UBERON:0002405!3.67e-11!115;UBERON:0003080!1.46e-10!42;UBERON:0002780!1.60e-10!41;UBERON:0001890!1.60e-10!41;UBERON:0006240!1.60e-10!41;UBERON:0001893!1.38e-09!34;UBERON:0002020!2.33e-09!34;UBERON:0003528!2.33e-09!34;UBERON:0004765!3.50e-09!101;UBERON:0001434!3.50e-09!101;UBERON:0002791!3.69e-09!33;UBERON:0002616!5.02e-09!59;UBERON:0001869!6.44e-09!32;UBERON:0001017!1.40e-08!82;UBERON:0003081!5.59e-08!216;UBERON:0005743!9.71e-08!86;UBERON:0000955!1.36e-07!69;UBERON:0006238!1.36e-07!69;UBERON:0002619!1.58e-07!22;UBERON:0001950!2.96e-07!20;UBERON:0003075!4.08e-07!86;UBERON:0007284!4.08e-07!86;UBERON:0000956!4.76e-07!25;UBERON:0000203!4.76e-07!25;UBERON:0000073!8.55e-07!94;UBERON:0001016!8.55e-07!94 | |ontology_enrichment_uberon=UBERON:0002390!2.94e-19!102;UBERON:0003061!2.94e-19!102;UBERON:0002193!1.01e-18!112;UBERON:0002371!8.77e-15!80;UBERON:0007023!1.99e-14!115;UBERON:0001474!4.00e-13!86;UBERON:0001049!1.35e-12!57;UBERON:0005068!1.35e-12!57;UBERON:0006241!1.35e-12!57;UBERON:0007135!1.35e-12!57;UBERON:0002405!3.67e-11!115;UBERON:0003080!1.46e-10!42;UBERON:0002780!1.60e-10!41;UBERON:0001890!1.60e-10!41;UBERON:0006240!1.60e-10!41;UBERON:0001893!1.38e-09!34;UBERON:0002020!2.33e-09!34;UBERON:0003528!2.33e-09!34;UBERON:0004765!3.50e-09!101;UBERON:0001434!3.50e-09!101;UBERON:0002791!3.69e-09!33;UBERON:0002616!5.02e-09!59;UBERON:0001869!6.44e-09!32;UBERON:0001017!1.40e-08!82;UBERON:0003081!5.59e-08!216;UBERON:0005743!9.71e-08!86;UBERON:0000955!1.36e-07!69;UBERON:0006238!1.36e-07!69;UBERON:0002619!1.58e-07!22;UBERON:0001950!2.96e-07!20;UBERON:0003075!4.08e-07!86;UBERON:0007284!4.08e-07!86;UBERON:0000956!4.76e-07!25;UBERON:0000203!4.76e-07!25;UBERON:0000073!8.55e-07!94;UBERON:0001016!8.55e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.14e-08;34!UBERON:0003528;2.80e-08;34!UBERON:0002020;2.80e-08;34!UBERON:0001869;3.14e-08;32!UBERON:0002791;3.22e-08;32!UBERON:0002780;1.20e-07;41!UBERON:0001890;1.20e-07;41!UBERON:0002619;1.42e-07;22!UBERON:0001950;2.79e-07;20!UBERON:0000073;3.13e-07;53!UBERON:0002616;3.13e-07;53!UBERON:0000956;3.32e-07;25!UBERON:0000203;3.32e-07;25 | |||
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| ||
|short_description=p2@RNF19B | |short_description=p2@RNF19B | ||
}} | }} |
Latest revision as of 16:28, 17 September 2015
Short description: | p2@RNF19B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNF19B_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -186bp_to_ENST00000235150, ENST00000356990, ENST00000373456, ENST00000405457, NM_001127361, NM_153341, uc001bwm.3, uc010oho.1, uc010ohp.1_5end |
EntrezGene: | RNF19B |
HGNC: | 26886 |
UniProt: | G3XA82E9PAW6Q6ZMZ0F5GY25 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.44e-27 | 72 |
classical monocyte | 9.23e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.23e-24 | 42 |
defensive cell | 1.18e-23 | 48 |
phagocyte | 1.18e-23 | 48 |
granulocyte monocyte progenitor cell | 4.73e-23 | 67 |
macrophage dendritic cell progenitor | 9.35e-23 | 61 |
monopoietic cell | 1.01e-21 | 59 |
monocyte | 1.01e-21 | 59 |
monoblast | 1.01e-21 | 59 |
promonocyte | 1.01e-21 | 59 |
myeloid lineage restricted progenitor cell | 8.32e-20 | 66 |
leukocyte | 8.91e-20 | 136 |
myeloid cell | 6.73e-14 | 108 |
common myeloid progenitor | 6.73e-14 | 108 |
nongranular leukocyte | 2.36e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 4.92e-13 | 120 |
hematopoietic stem cell | 7.50e-11 | 168 |
hematopoietic cell | 2.89e-10 | 177 |
hematopoietic oligopotent progenitor cell | 6.41e-10 | 161 |
hematopoietic multipotent progenitor cell | 6.41e-10 | 161 |
granulocyte | 9.76e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.93e-21 | 98 |
blood island | 1.93e-21 | 98 |
hemolymphoid system | 9.75e-21 | 108 |
bone marrow | 4.83e-17 | 76 |
immune system | 3.30e-16 | 93 |
bone element | 4.34e-15 | 82 |
adult organism | 2.25e-14 | 114 |
skeletal element | 5.30e-13 | 90 |
neural tube | 1.27e-12 | 56 |
neural rod | 1.27e-12 | 56 |
future spinal cord | 1.27e-12 | 56 |
neural keel | 1.27e-12 | 56 |
regional part of nervous system | 3.85e-12 | 53 |
regional part of brain | 3.85e-12 | 53 |
regional part of forebrain | 1.38e-10 | 41 |
forebrain | 1.38e-10 | 41 |
anterior neural tube | 1.38e-10 | 41 |
future forebrain | 1.38e-10 | 41 |
skeletal system | 2.81e-10 | 100 |
telencephalon | 1.21e-09 | 34 |
brain grey matter | 2.04e-09 | 34 |
gray matter | 2.04e-09 | 34 |
cerebral hemisphere | 5.69e-09 | 32 |
lateral plate mesoderm | 5.96e-09 | 203 |
regional part of telencephalon | 7.59e-09 | 32 |
central nervous system | 9.77e-09 | 81 |
brain | 9.64e-08 | 68 |
future brain | 9.64e-08 | 68 |
nervous system | 1.39e-07 | 89 |
regional part of cerebral cortex | 1.43e-07 | 22 |
neocortex | 2.69e-07 | 20 |
cerebral cortex | 4.34e-07 | 25 |
pallium | 4.34e-07 | 25 |
neural plate | 8.70e-07 | 82 |
presumptive neural plate | 8.70e-07 | 82 |