FFCP PHASE1:Hg19::chr1:230410128..230410174,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:230410128..230410174,+ | |||
|coexpression_cluster_id=C431 | |coexpression_cluster_id=C431 | ||
|description=CAGE_peak_at_chr1:230410128..230410174,+ | |description=CAGE_peak_at_chr1:230410128..230410174,+ | ||
|id=chr1:230410128..230410174,+ | |id=chr1:230410128..230410174,+ | ||
|ontology_enrichment_celltype=CL:0000838!1.23e-18!52;CL:0000542!4.09e-18!53;CL:0000051!4.09e-18!53;CL:0000791!6.17e-16!18;CL:0000789!6.17e-16!18;CL:0002420!6.17e-16!18;CL:0002419!6.17e-16!18;CL:0000790!6.17e-16!18;CL:0000625!2.83e-14!11;CL:0000236!1.15e-11!14;CL:0000037!1.57e-11!172;CL:0000566!1.57e-11!172;CL:0000988!2.23e-11!182;CL:0002032!1.93e-10!165;CL:0000837!1.93e-10!165;CL:0000084!2.39e-10!25;CL:0000827!2.39e-10!25;CL:0000738!3.04e-08!140;CL:0002031!2.14e-07!124;CL:0000945!5.63e-07!24;CL:0000826!5.63e-07!24;CL:0002087!7.80e-07!119 | |ontology_enrichment_celltype=CL:0000838!1.23e-18!52;CL:0000542!4.09e-18!53;CL:0000051!4.09e-18!53;CL:0000791!6.17e-16!18;CL:0000789!6.17e-16!18;CL:0002420!6.17e-16!18;CL:0002419!6.17e-16!18;CL:0000790!6.17e-16!18;CL:0000625!2.83e-14!11;CL:0000236!1.15e-11!14;CL:0000037!1.57e-11!172;CL:0000566!1.57e-11!172;CL:0000988!2.23e-11!182;CL:0002032!1.93e-10!165;CL:0000837!1.93e-10!165;CL:0000084!2.39e-10!25;CL:0000827!2.39e-10!25;CL:0000738!3.04e-08!140;CL:0002031!2.14e-07!124;CL:0000945!5.63e-07!24;CL:0000826!5.63e-07!24;CL:0002087!7.80e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000236;4.11e-23;13!CL:0000945;6.21e-12;24!CL:0000815;1.06e-10;2!CL:0000792;1.06e-10;2!CL:0002677;1.06e-10;2!CL:0000542;3.74e-10;53!CL:0000791;5.81e-09;18!CL:0000789;5.81e-09;18!CL:0002419;5.81e-09;18!CL:0000898;2.09e-07;3!CL:0000625;5.24e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.40e-21,14;CL:0000838,3.34e-15,52;CL:0000542,7.37e-15,53;CL:0000051,7.37e-15,53;CL:0000945,6.41e-12,24;CL:0000826,6.41e-12,24;CL:0000815,8.53e-11,2;CL:0000792,8.53e-11,2;CL:0002677,8.53e-11,2;CL:0000037,4.85e-09,168;CL:0000791,5.40e-09,18;CL:0000789,5.40e-09,18;CL:0002420,5.40e-09,18;CL:0002419,5.40e-09,18;CL:0000790,5.40e-09,18;CL:0002032,1.39e-08,161;CL:0000837,1.39e-08,161;CL:0000988,2.43e-08,177;CL:0000898,1.81e-07,3;CL:0000625,5.20e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;3.74e-10;53!CL:0000790;5.81e-09;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.17e-07!115 | |ontology_enrichment_uberon=UBERON:0007023!4.17e-07!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,2.64240395401362,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,3.27683166757279,2.66852776159066,0.853460445133014,1.20118796110804,0.574752439954483,3.30522436392431,7.63243003628291,2.27685187643779,2.93618594685469,0,2.64342657158052,1.12101712596307,2.63384084775077,0.590129310341499,0.393010762749165,0,1.5046784585161,4.88883399950386,0.946895611469467,0,1.44833593950726,1.76763544484902,2.43687284041983,5.68688113906533,0.512365278902701,4.03183977435623,0.328875809207352,0,0,1.77943875794473,1.87278579662799,1.04535523804977,0.113309342697566,0,0,0.506039384039006,0.637130828648193,1.95325036156926,0,0.752875595388864,0.511946444617674,1.24930726552346,1.18388626022008,0.821127996921047,0.80642697289893,0.534880391567015,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0,0.402829317109147,0.760272105718513,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81754988842323,0.621984346622316,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,0.170093705276516,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0,1.23408681925858,0,0,2.37937552888281,0,0,0,0,0,0,0,19.9579371432817,47.4933317928269,0,0,15.7246419743537,0,0,0,25.7323502258437,0,0,0,0.343505344755765,0,0,0,0,0,0,14.0636952807511,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.295930216910801,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0,0,0,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,0,0,0.470940769185074,0.332423363800313,0,0,0,0,1.58936578980379,0,0,0,0,0,0.265372693510018,0.611030144933625,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.213574825135389,0.314408610199332,0,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,1.03382309777839,0.45120521581504,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0,0,0.23806443146374,2.97108985245628,0.869046000142011,0,0.0636471582781649,0.202117188958219,0,0,0.673520530145875,0.143444410785353,0,0,0.106727345877715,0,0,0,0.611207220914332,1.62758471326295,0,0.402547587182052,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,2.64240395401362,0,0,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51992488922645,3.27683166757279,2.66852776159066,0.853460445133014,1.20118796110804,0.574752439954483,3.30522436392431,7.63243003628291,2.27685187643779,2.93618594685469,0,2.64342657158052,1.12101712596307,2.63384084775077,0.590129310341499,0.393010762749165,0,1.5046784585161,4.88883399950386,0.946895611469467,0,1.44833593950726,1.76763544484902,2.43687284041983,5.68688113906533,0.512365278902701,4.03183977435623,0.328875809207352,0,0,1.77943875794473,1.87278579662799,1.04535523804977,0.113309342697566,0,0,0.506039384039006,0.637130828648193,1.95325036156926,0,0.752875595388864,0.511946444617674,1.24930726552346,1.18388626022008,0.821127996921047,0.80642697289893,0.534880391567015,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0.35576626268671,0,0.402829317109147,0.760272105718513,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81754988842323,0.621984346622316,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.215627574859517,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,0.170093705276516,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0,1.23408681925858,0,0,2.37937552888281,0,0,0,0,0,0,0,19.9579371432817,47.4933317928269,0,0,15.7246419743537,0,0,0,25.7323502258437,0,0,0,0.343505344755765,0,0,0,0,0,0,14.0636952807511,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.295930216910801,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52581736317083,0,0,0,0,0,0.615602068030377,0,0,0,0,0,0.0915975934018623,0,0,0.470940769185074,0.332423363800313,0,0,0,0,1.58936578980379,0,0,0,0,0,0.265372693510018,0.611030144933625,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0.213574825135389,0.314408610199332,0,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,1.03382309777839,0.45120521581504,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.454672189309436,0,0,0,0,0.23806443146374,2.97108985245628,0.869046000142011,0,0.0636471582781649,0.202117188958219,0,0,0.673520530145875,0.143444410785353,0,0,0.106727345877715,0,0,0,0.611207220914332,1.62758471326295,0,0.402547587182052,0.641136984606466 | ||
|short_description=p@chr1:230410128..230410174,+ | |short_description=p@chr1:230410128..230410174,+ | ||
}} | }} |
Latest revision as of 04:57, 28 July 2015
Short description: | p@chr1:230410128..230410174, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:230410128..230410174, + |
Coexpression cluster: | C431_acute_leukemia_Mast_leiomyoblastoma_chronic_immature_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.40e-21 | 14 |
lymphoid lineage restricted progenitor cell | 3.34e-15 | 52 |
lymphocyte | 7.37e-15 | 53 |
common lymphoid progenitor | 7.37e-15 | 53 |
lymphocyte of B lineage | 6.41e-12 | 24 |
pro-B cell | 6.41e-12 | 24 |
regulatory T cell | 8.53e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.53e-11 | 2 |
naive regulatory T cell | 8.53e-11 | 2 |
hematopoietic stem cell | 4.85e-09 | 168 |
mature alpha-beta T cell | 5.40e-09 | 18 |
alpha-beta T cell | 5.40e-09 | 18 |
immature T cell | 5.40e-09 | 18 |
mature T cell | 5.40e-09 | 18 |
immature alpha-beta T cell | 5.40e-09 | 18 |
hematopoietic oligopotent progenitor cell | 1.39e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.39e-08 | 161 |
hematopoietic cell | 2.43e-08 | 177 |
naive T cell | 1.81e-07 | 3 |
CD8-positive, alpha-beta T cell | 5.20e-07 | 11 |