FFCP PHASE1:Hg19::chr19:6680235..6680290,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=718 | |EntrezGene=718 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1318 | |HGNC=1318 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-73bp_to_ENST00000482039_5end | |association_with_transcript=-73bp_to_ENST00000482039_5end | ||
|cluster_id=chr19:6680235..6680290,- | |||
|coexpression_cluster_id=C166 | |coexpression_cluster_id=C166 | ||
|description=CAGE_peak_4_at_C3_5end | |description=CAGE_peak_4_at_C3_5end | ||
|id=chr19:6680235..6680290,- | |id=chr19:6680235..6680290,- | ||
|ontology_enrichment_celltype=CL:0000235!7.07e-08!10;CL:0002009!4.45e-07!65;CL:0002194!9.01e-07!63;CL:0000576!9.01e-07!63;CL:0000040!9.01e-07!63;CL:0000559!9.01e-07!63 | |ontology_enrichment_celltype=CL:0000235!7.07e-08!10;CL:0002009!4.45e-07!65;CL:0002194!9.01e-07!63;CL:0000576!9.01e-07!63;CL:0000040!9.01e-07!63;CL:0000559!9.01e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0000235;2.09e-23;6!CL:0000473;2.60e-14;39!CL:0000234;2.60e-14;39!CL:0000182;1.21e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,2.31e-23,6;CL:0002009,5.09e-15,61;CL:0000473,7.05e-14,48;CL:0000234,7.05e-14,48;CL:0002194,1.00e-13,59;CL:0000576,1.00e-13,59;CL:0000040,1.00e-13,59;CL:0000559,1.00e-13,59;CL:0000557,2.62e-13,67;CL:0000839,7.22e-12,66;CL:0000766,1.45e-10,72;CL:0000182,1.19e-07,12;CL:0000763,9.49e-07,108;CL:0000049,9.49e-07,108 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!1.76e-10!241;UBERON:0000025!4.72e-10!194;UBERON:0000923!5.57e-09!604;UBERON:0005291!5.57e-09!604;UBERON:0006598!5.57e-09!604;UBERON:0002532!5.57e-09!604;UBERON:0002050!6.91e-09!605;UBERON:0005423!6.91e-09!605;UBERON:0000477!1.80e-08!286;UBERON:0003914!2.91e-08!118;UBERON:0000922!3.04e-08!612;UBERON:0000483!4.55e-08!309;UBERON:0000119!9.51e-08!312;UBERON:0000926!1.23e-07!448;UBERON:0004120!1.23e-07!448;UBERON:0006603!1.23e-07!448;UBERON:0000467!1.62e-07!625;UBERON:0000062!1.84e-07!511;UBERON:0000480!1.97e-07!626;UBERON:0009497!2.51e-07!25;UBERON:0000015!2.51e-07!25;UBERON:0002423!2.51e-07!25;UBERON:0006235!2.51e-07!25;UBERON:0004161!2.51e-07!25;UBERON:0005256!5.75e-07!143;UBERON:0002405!7.97e-07!115;UBERON:0002365!8.75e-07!31;UBERON:0002330!8.75e-07!31;UBERON:0005172!9.81e-07!55;UBERON:0005173!9.81e-07!55 | |ontology_enrichment_uberon=UBERON:0004111!1.76e-10!241;UBERON:0000025!4.72e-10!194;UBERON:0000923!5.57e-09!604;UBERON:0005291!5.57e-09!604;UBERON:0006598!5.57e-09!604;UBERON:0002532!5.57e-09!604;UBERON:0002050!6.91e-09!605;UBERON:0005423!6.91e-09!605;UBERON:0000477!1.80e-08!286;UBERON:0003914!2.91e-08!118;UBERON:0000922!3.04e-08!612;UBERON:0000483!4.55e-08!309;UBERON:0000119!9.51e-08!312;UBERON:0000926!1.23e-07!448;UBERON:0004120!1.23e-07!448;UBERON:0006603!1.23e-07!448;UBERON:0000467!1.62e-07!625;UBERON:0000062!1.84e-07!511;UBERON:0000480!1.97e-07!626;UBERON:0009497!2.51e-07!25;UBERON:0000015!2.51e-07!25;UBERON:0002423!2.51e-07!25;UBERON:0006235!2.51e-07!25;UBERON:0004161!2.51e-07!25;UBERON:0005256!5.75e-07!143;UBERON:0002405!7.97e-07!115;UBERON:0002365!8.75e-07!31;UBERON:0002330!8.75e-07!31;UBERON:0005172!9.81e-07!55;UBERON:0005173!9.81e-07!55 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;6.79e-09;19!UBERON:0006925;6.79e-09;19!UBERON:0002423;1.90e-08;25!UBERON:0005172;4.81e-07;52!UBERON:0005173;4.81e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.01e-11,76;UBERON:0004765,3.11e-11,90;UBERON:0001474,3.95e-10,82;UBERON:0001434,1.17e-09,100;UBERON:0002107,6.72e-09,19;UBERON:0006925,6.72e-09,19;UBERON:0008836,6.72e-09,19;UBERON:0005172,7.75e-09,54;UBERON:0005173,7.75e-09,54;UBERON:0002405,1.85e-08,93;UBERON:0009497,1.86e-08,25;UBERON:0000015,1.86e-08,25;UBERON:0002423,1.86e-08,25;UBERON:0006235,1.86e-08,25;UBERON:0004161,1.86e-08,25;UBERON:0002390,7.89e-08,98;UBERON:0003061,7.89e-08,98;UBERON:0002417,1.12e-07,60;UBERON:0000916,1.12e-07,60;UBERON:0008835,1.53e-07,22;UBERON:0003894,1.53e-07,22;UBERON:0009854,3.60e-07,23;UBERON:0002193,9.49e-07,108 | |||
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| ||
|short_description=p4@C3 | |short_description=p4@C3 | ||
}} | }} |
Latest revision as of 17:52, 24 September 2015
Short description: | p4@C3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_C3_5end |
Coexpression cluster: | C166_Macrophage_Monocytederived_Dendritic_adipose_lymph_CD14_lung |
Association with transcript: | -73bp_to_ENST00000482039_5end |
EntrezGene: | C3 |
HGNC: | 1318 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 2.31e-23 | 6 |
macrophage dendritic cell progenitor | 5.09e-15 | 61 |
defensive cell | 7.05e-14 | 48 |
phagocyte | 7.05e-14 | 48 |
monopoietic cell | 1.00e-13 | 59 |
monocyte | 1.00e-13 | 59 |
monoblast | 1.00e-13 | 59 |
promonocyte | 1.00e-13 | 59 |
granulocyte monocyte progenitor cell | 2.62e-13 | 67 |
myeloid lineage restricted progenitor cell | 7.22e-12 | 66 |
myeloid leukocyte | 1.45e-10 | 72 |
hepatocyte | 1.19e-07 | 12 |
myeloid cell | 9.49e-07 | 108 |
common myeloid progenitor | 9.49e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.01e-11 | 76 |
skeletal element | 3.11e-11 | 90 |
bone element | 3.95e-10 | 82 |
skeletal system | 1.17e-09 | 100 |
liver | 6.72e-09 | 19 |
digestive gland | 6.72e-09 | 19 |
liver bud | 6.72e-09 | 19 |
abdomen element | 7.75e-09 | 54 |
abdominal segment element | 7.75e-09 | 54 |
immune system | 1.85e-08 | 93 |
epithelium of foregut-midgut junction | 1.86e-08 | 25 |
anatomical boundary | 1.86e-08 | 25 |
hepatobiliary system | 1.86e-08 | 25 |
foregut-midgut junction | 1.86e-08 | 25 |
septum transversum | 1.86e-08 | 25 |
hematopoietic system | 7.89e-08 | 98 |
blood island | 7.89e-08 | 98 |
abdominal segment of trunk | 1.12e-07 | 60 |
abdomen | 1.12e-07 | 60 |
hepatic diverticulum | 1.53e-07 | 22 |
liver primordium | 1.53e-07 | 22 |
digestive tract diverticulum | 3.60e-07 | 23 |
hemolymphoid system | 9.49e-07 | 108 |