FFCP PHASE1:Hg19::chr18:67789010..67789054,-: Difference between revisions
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|id=chr18:67789010..67789054,-
|short_description=p12@RTTN
|description=CAGE_peak_12_at_RTTN_5end
|association_with_transcript=-178bp_to_AK126538_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25914 | |EntrezGene=25914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=18654 | |HGNC=18654 | ||
|TSSclassifier=strong | |||
|UniProt=Q86VV8 | |UniProt=Q86VV8 | ||
|association_with_transcript=-178bp_to_AK126538_5end | |||
|cluster_id=chr18:67789010..67789054,- | |||
|coexpression_cluster_id=C74 | |||
|description=CAGE_peak_12_at_RTTN_5end | |||
|id=chr18:67789010..67789054,- | |||
|ontology_enrichment_celltype=CL:0000945!1.52e-15!24;CL:0000826!1.52e-15!24;CL:0000838!1.32e-13!52;CL:0000542!2.56e-13!53;CL:0000051!2.56e-13!53;CL:0000080!7.54e-12!6;CL:0000946!1.89e-09!1;CL:0000786!1.89e-09!1;CL:0000980!1.89e-09!1 | |||
|ontology_enrichment_celltype_v019=CL:0000946;3.34e-66;1!CL:0000786;3.34e-66;1!CL:0000945;4.20e-12;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,4.66e-66,1;CL:0000786,4.66e-66,1;CL:0000980,4.66e-66,1;CL:0000785,7.05e-34,2;CL:0000955,7.05e-34,2;CL:0000818,7.05e-34,2;CL:0000954,7.05e-34,2;CL:0000816,7.05e-34,2;CL:0000817,4.09e-23,3;CL:0000945,4.20e-12,24;CL:0000826,4.20e-12,24 | |||
|ontology_enrichment_development_v019=CL:0000954;5.96e-34;2!UBERON:0004872;8.16e-11;7 | |||
|ontology_enrichment_disease=DOID:630!2.60e-09!1;DOID:0050177!2.60e-09!1;DOID:0050427!2.60e-09!1;DOID:0060060!2.82e-09!1;DOID:0060061!2.82e-09!1;DOID:8691!2.82e-09!1;DOID:3371!9.17e-09!1;DOID:4549!9.17e-09!1;DOID:5861!9.17e-09!1;DOID:6496!9.17e-09!1;DOID:0060058!9.10e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;5.73e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,5.73e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0002106!9.24e-24!3;UBERON:0004854!9.24e-24!3;UBERON:0009034!9.24e-24!3;UBERON:0002095!9.24e-24!3;UBERON:0004782!9.24e-24!3;UBERON:0003281!9.24e-24!3;UBERON:0009664!9.24e-24!3;UBERON:0002296!9.24e-24!3;UBERON:0005602!9.24e-24!3;UBERON:0001179!9.24e-24!3;UBERON:0006293!9.24e-24!3;UBERON:0004177!1.15e-17!7;UBERON:0000945!2.92e-09!8;UBERON:0010039!2.92e-09!8;UBERON:0002372!5.31e-09!1;UBERON:0001961!5.31e-09!1;UBERON:0001744!5.31e-09!1;UBERON:0001735!5.31e-09!1;UBERON:0005057!3.21e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;2.62e-23;3!UBERON:0004177;1.40e-14;5!UBERON:0005057;1.40e-14;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,2.62e-23,3;UBERON:0004854,2.62e-23,3;UBERON:0009034,2.62e-23,3;UBERON:0002095,2.62e-23,3;UBERON:0004782,2.62e-23,3;UBERON:0003281,2.62e-23,3;UBERON:0009664,2.62e-23,3;UBERON:0002296,2.62e-23,3;UBERON:0005602,2.62e-23,3;UBERON:0001179,2.62e-23,3;UBERON:0006293,2.62e-23,3;UBERON:0004177,8.16e-11,7;UBERON:0005057,8.16e-11,7;UBERON:0000945,1.24e-09,8;UBERON:0010039,1.24e-09,8;UBERON:0004457,7.48e-07,12;UBERON:0000042,7.48e-07,12;UBERON:0003887,7.48e-07,12 | |||
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|short_description=p12@RTTN | |||
}} | }} |
Latest revision as of 06:59, 20 September 2015
Short description: | p12@RTTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_RTTN_5end |
Coexpression cluster: | C74_splenic_B_b_plasma_xeroderma_lymphoma_hairy |
Association with transcript: | -178bp_to_AK126538_5end |
EntrezGene: | RTTN |
HGNC: | 18654 |
UniProt: | Q86VV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 4.66e-66 | 1 |
plasma cell | 4.66e-66 | 1 |
plasmablast | 4.66e-66 | 1 |
mature B cell | 7.05e-34 | 2 |
pre-B-II cell | 7.05e-34 | 2 |
transitional stage B cell | 7.05e-34 | 2 |
small pre-B-II cell | 7.05e-34 | 2 |
immature B cell | 7.05e-34 | 2 |
precursor B cell | 4.09e-23 | 3 |
lymphocyte of B lineage | 4.20e-12 | 24 |
pro-B cell | 4.20e-12 | 24 |
Ontology term | p-value | n |
---|---|---|
spleen | 2.62e-23 | 3 |
gastrointestinal system mesentery | 2.62e-23 | 3 |
stomach region | 2.62e-23 | 3 |
mesentery | 2.62e-23 | 3 |
gastrointestinal system serosa | 2.62e-23 | 3 |
mesentery of stomach | 2.62e-23 | 3 |
gut mesentery | 2.62e-23 | 3 |
dorsal mesentery | 2.62e-23 | 3 |
dorsal mesogastrium | 2.62e-23 | 3 |
peritoneal cavity | 2.62e-23 | 3 |
spleen primordium | 2.62e-23 | 3 |
hemopoietic organ | 8.16e-11 | 7 |
immune organ | 8.16e-11 | 7 |
stomach | 1.24e-09 | 8 |
food storage organ | 1.24e-09 | 8 |
cavity lining | 7.48e-07 | 12 |
serous membrane | 7.48e-07 | 12 |
intraembryonic coelom | 7.48e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 5.73e-08 | 10 |