FFCP PHASE1:Hg19::chr19:18896916..18896933,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18896916..18896933,+ | |||
|coexpression_cluster_id=C240 | |coexpression_cluster_id=C240 | ||
|description=CAGE_peak_at_chr19:18896916..18896933,+ | |description=CAGE_peak_at_chr19:18896916..18896933,+ | ||
|id=chr19:18896916..18896933,+ | |id=chr19:18896916..18896933,+ | ||
|ontology_enrichment_celltype=CL:0000136!6.33e-32!15;CL:0002334!5.81e-20!12;CL:0000153!9.21e-20!9;CL:0000447!9.21e-20!9;CL:0002580!1.87e-16!3;CL:0002615!2.68e-16!3;CL:0000135!3.82e-16!3;CL:0000386!3.82e-16!3;CL:0000388!3.82e-16!3;CL:0002579!2.00e-15!3;CL:0000667!9.88e-14!6;CL:0000058!9.88e-14!6;CL:0000138!9.88e-14!6;CL:0000499!1.04e-13!27;CL:0000325!1.65e-13!39;CL:0000327!1.72e-12!14;CL:0002617!1.47e-11!2;CL:0000057!5.23e-10!75;CL:0000214!1.03e-07!3;CL:0002521!1.99e-07!3;CL:0000055!2.66e-07!180;CL:0000134!8.68e-07!358 | |ontology_enrichment_celltype=CL:0000136!6.33e-32!15;CL:0002334!5.81e-20!12;CL:0000153!9.21e-20!9;CL:0000447!9.21e-20!9;CL:0002580!1.87e-16!3;CL:0002615!2.68e-16!3;CL:0000135!3.82e-16!3;CL:0000386!3.82e-16!3;CL:0000388!3.82e-16!3;CL:0002579!2.00e-15!3;CL:0000667!9.88e-14!6;CL:0000058!9.88e-14!6;CL:0000138!9.88e-14!6;CL:0000499!1.04e-13!27;CL:0000325!1.65e-13!39;CL:0000327!1.72e-12!14;CL:0002617!1.47e-11!2;CL:0000057!5.23e-10!75;CL:0000214!1.03e-07!3;CL:0002521!1.99e-07!3;CL:0000055!2.66e-07!180;CL:0000134!8.68e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000136;5.11e-37;13!CL:0002580;5.16e-31;3!CL:0002615;1.05e-30;3!CL:0002334;1.96e-29;12!CL:0002617;2.08e-21;2!CL:0000135;1.46e-14;3!CL:0000388;1.46e-14;3!CL:0002579;5.58e-14;3!CL:0002581;3.28e-11;1!CL:0002616;3.28e-11;1!CL:0000153;1.17e-10;9!CL:0000447;1.17e-10;9!CL:0000499;6.29e-09;28!CL:0000138;1.21e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.16e-41,15;CL:0002580,4.91e-31,3;CL:0002615,1.00e-30,3;CL:0002334,1.96e-29,12;CL:0002617,2.55e-21,2;CL:0000135,1.51e-14,3;CL:0000388,1.51e-14,3;CL:0002579,6.58e-14,3;CL:0002581,2.68e-11,1;CL:0002616,3.28e-11,1;CL:0000153,1.06e-10,9;CL:0000447,1.06e-10,9;CL:0000499,6.03e-09,28;CL:0000058,1.13e-07,6;CL:0000138,1.13e-07,6;CL:0000219,1.49e-07,386;CL:0000057,1.78e-07,76;CL:0000134,1.80e-07,354;CL:0002320,2.86e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!6.16e-30!6;UBERON:0002358!6.16e-30!6;UBERON:0003684!6.16e-30!6;UBERON:0001178!6.16e-30!6;UBERON:0004457!8.01e-26!12;UBERON:0000042!8.01e-26!12;UBERON:0000043!3.82e-16!3;UBERON:0000310!5.43e-13!10;UBERON:0001013!3.23e-12!14;UBERON:0001443!8.77e-12!11;UBERON:0005406!2.87e-11!2;UBERON:0006915!1.03e-07!3;UBERON:0002018!1.03e-07!3;UBERON:0002217!1.03e-07!3;UBERON:0007616!1.03e-07!3;UBERON:0002190!1.99e-07!3;UBERON:0002384!7.36e-07!375;UBERON:0004458!9.98e-07!49 | |ontology_enrichment_uberon=UBERON:0003688!6.16e-30!6;UBERON:0002358!6.16e-30!6;UBERON:0003684!6.16e-30!6;UBERON:0001178!6.16e-30!6;UBERON:0004457!8.01e-26!12;UBERON:0000042!8.01e-26!12;UBERON:0000043!3.82e-16!3;UBERON:0000310!5.43e-13!10;UBERON:0001013!3.23e-12!14;UBERON:0001443!8.77e-12!11;UBERON:0005406!2.87e-11!2;UBERON:0006915!1.03e-07!3;UBERON:0002018!1.03e-07!3;UBERON:0002217!1.03e-07!3;UBERON:0007616!1.03e-07!3;UBERON:0002190!1.99e-07!3;UBERON:0002384!7.36e-07!375;UBERON:0004458!9.98e-07!49 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;3.94e-41;6!UBERON:0002358;3.94e-41;6!UBERON:0003684;3.94e-41;6!UBERON:0001178;3.94e-41;6!UBERON:0004457;2.91e-39;9!UBERON:0000042;2.91e-39;9!UBERON:0000310;2.51e-25;10!UBERON:0001443;5.04e-23;11!UBERON:0005406;1.17e-20;2!UBERON:0007846;1.46e-14;3!UBERON:0000043;1.46e-14;3!UBERON:0007845;1.46e-14;3!UBERON:0001013;1.89e-11;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,4.66e-41,6;UBERON:0002358,4.66e-41,6;UBERON:0003684,4.66e-41,6;UBERON:0001178,4.66e-41,6;UBERON:0004457,2.28e-29,12;UBERON:0000042,2.28e-29,12;UBERON:0000310,2.71e-25,10;UBERON:0001443,5.40e-23,11;UBERON:0005406,9.53e-21,2;UBERON:0007846,1.51e-14,3;UBERON:0000043,1.51e-14,3;UBERON:0007845,1.51e-14,3;UBERON:0001013,1.92e-11,14;UBERON:0009569,1.61e-07,112;UBERON:0002384,5.38e-07,371;UBERON:0004458,6.69e-07,49 | |||
|phase1_expression=8.72056220498672,3.21150785836475,1.69145284915165,5.00366491765652,4.91657203870017,2.61701557230111,2.53299878168311,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,3.62116297402059,0,3.89307896242109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0.515281080091258,0.37223371266318,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72918588600655,9.66810431714793,4.2099014164961,1.02511319404561,2.55853624533352,0.321707842287215,2.96836132889982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.79993743535795,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,5.0839319149456,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=8.72056220498672,3.21150785836475,1.69145284915165,5.00366491765652,4.91657203870017,2.61701557230111,2.53299878168311,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,3.62116297402059,0,3.89307896242109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0.515281080091258,0.37223371266318,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72918588600655,9.66810431714793,4.2099014164961,1.02511319404561,2.55853624533352,0.321707842287215,2.96836132889982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.79993743535795,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.743990036333503,5.0839319149456,3.46101249699031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr19:18896916..18896933,+ | |short_description=p@chr19:18896916..18896933,+ | ||
}} | }} |
Latest revision as of 05:20, 26 July 2015
Short description: | p@chr19:18896916..18896933, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18896916..18896933, + |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.16e-41 | 15 |
preadipocyte of the breast | 4.91e-31 | 3 |
adipocyte of omentum tissue | 1.00e-30 | 3 |
preadipocyte | 1.96e-29 | 12 |
adipocyte of breast | 2.55e-21 | 2 |
fibrocyte | 1.51e-14 | 3 |
tendon cell | 1.51e-14 | 3 |
omentum preadipocyte | 6.58e-14 | 3 |
perirenal preadipocyte | 2.68e-11 | 1 |
perirenal adipocyte cell | 3.28e-11 | 1 |
GAG secreting cell | 1.06e-10 | 9 |
carbohydrate secreting cell | 1.06e-10 | 9 |
stromal cell | 6.03e-09 | 28 |
chondroblast | 1.13e-07 | 6 |
chondrocyte | 1.13e-07 | 6 |
motile cell | 1.49e-07 | 386 |
fibroblast | 1.78e-07 | 76 |
mesenchymal cell | 1.80e-07 | 354 |
connective tissue cell | 2.86e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
omentum | 4.66e-41 | 6 |
peritoneum | 4.66e-41 | 6 |
abdominal cavity | 4.66e-41 | 6 |
visceral peritoneum | 4.66e-41 | 6 |
cavity lining | 2.28e-29 | 12 |
serous membrane | 2.28e-29 | 12 |
breast | 2.71e-25 | 10 |
chest | 5.40e-23 | 11 |
perirenal fat | 9.53e-21 | 2 |
dense regular connective tissue | 1.51e-14 | 3 |
tendon | 1.51e-14 | 3 |
regular connective tissue | 1.51e-14 | 3 |
adipose tissue | 1.92e-11 | 14 |
subdivision of trunk | 1.61e-07 | 112 |
connective tissue | 5.38e-07 | 371 |
body cavity or lining | 6.69e-07 | 49 |