FFCP PHASE1:Hg19::chr19:18895812..18895830,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:18895812..18895830,- | |||
|coexpression_cluster_id=C240 | |coexpression_cluster_id=C240 | ||
|description=CAGE_peak_at_chr19:18895812..18895830,- | |description=CAGE_peak_at_chr19:18895812..18895830,- | ||
|id=chr19:18895812..18895830,- | |id=chr19:18895812..18895830,- | ||
|ontology_enrichment_celltype=CL:0000136!3.75e-25!15;CL:0002334!5.29e-25!12;CL:0000153!2.24e-19!9;CL:0000447!2.24e-19!9;CL:0000057!1.45e-16!75;CL:0002580!3.83e-16!3;CL:0000135!6.63e-16!3;CL:0000386!6.63e-16!3;CL:0000388!6.63e-16!3;CL:0002615!6.96e-16!3;CL:0002579!3.69e-15!3;CL:0000667!1.38e-13!6;CL:0000058!1.38e-13!6;CL:0000138!1.38e-13!6;CL:0000499!2.00e-13!27;CL:0000327!3.07e-12!14;CL:0002617!1.64e-11!2;CL:0000055!7.61e-10!180;CL:0000134!2.39e-09!358;CL:0002320!4.99e-09!365;CL:0000325!1.08e-08!39;CL:0000219!6.68e-08!390;CL:0000214!1.81e-07!3 | |ontology_enrichment_celltype=CL:0000136!3.75e-25!15;CL:0002334!5.29e-25!12;CL:0000153!2.24e-19!9;CL:0000447!2.24e-19!9;CL:0000057!1.45e-16!75;CL:0002580!3.83e-16!3;CL:0000135!6.63e-16!3;CL:0000386!6.63e-16!3;CL:0000388!6.63e-16!3;CL:0002615!6.96e-16!3;CL:0002579!3.69e-15!3;CL:0000667!1.38e-13!6;CL:0000058!1.38e-13!6;CL:0000138!1.38e-13!6;CL:0000499!2.00e-13!27;CL:0000327!3.07e-12!14;CL:0002617!1.64e-11!2;CL:0000055!7.61e-10!180;CL:0000134!2.39e-09!358;CL:0002320!4.99e-09!365;CL:0000325!1.08e-08!39;CL:0000219!6.68e-08!390;CL:0000214!1.81e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002580;8.66e-30;3!CL:0002615;4.27e-29;3!CL:0000135;5.17e-29;3!CL:0000388;5.17e-29;3!CL:0002334;4.30e-28;12!CL:0000136;4.05e-26;13!CL:0000153;4.55e-26;9!CL:0000447;4.55e-26;9!CL:0000138;1.87e-25;6!CL:0002617;9.83e-21;2!CL:0000499;1.35e-20;28!CL:0000327;1.24e-15;15!CL:0002579;2.19e-13;3!CL:0002581;1.15e-10;1!CL:0002616;1.15e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,1.00e-29,3;CL:0000135,2.91e-29,3;CL:0000388,2.91e-29,3;CL:0002615,3.20e-29,3;CL:0002334,6.59e-28,12;CL:0000153,5.20e-26,9;CL:0000447,5.20e-26,9;CL:0000058,2.41e-25,6;CL:0000138,2.41e-25,6;CL:0000136,1.08e-22,15;CL:0002617,9.37e-21,2;CL:0000499,1.23e-20,28;CL:0000327,1.34e-15,15;CL:0002579,3.20e-13,3;CL:0002616,9.05e-11,1;CL:0002581,1.33e-10,1;CL:0000134,6.59e-09,354;CL:0000057,7.00e-09,76;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.02e-08!5;DOID:450!1.02e-08!5;DOID:66!1.02e-08!5;DOID:423!1.02e-08!5;DOID:0080000!1.02e-08!5;DOID:11722!1.02e-08!5 | |ontology_enrichment_disease=DOID:17!1.02e-08!5;DOID:450!1.02e-08!5;DOID:66!1.02e-08!5;DOID:423!1.02e-08!5;DOID:0080000!1.02e-08!5;DOID:11722!1.02e-08!5 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!2.93e-29!6;UBERON:0002358!2.93e-29!6;UBERON:0003684!2.93e-29!6;UBERON:0001178!2.93e-29!6;UBERON:0004457!3.97e-25!12;UBERON:0000042!3.97e-25!12;UBERON:0001443!2.87e-16!11;UBERON:0000043!6.63e-16!3;UBERON:0000310!8.34e-13!10;UBERON:0005406!6.35e-11!2;UBERON:0002384!2.13e-09!375;UBERON:0001013!2.65e-08!14;UBERON:0006915!1.81e-07!3;UBERON:0002018!1.81e-07!3;UBERON:0002217!1.81e-07!3;UBERON:0007616!1.81e-07!3 | |ontology_enrichment_uberon=UBERON:0003688!2.93e-29!6;UBERON:0002358!2.93e-29!6;UBERON:0003684!2.93e-29!6;UBERON:0001178!2.93e-29!6;UBERON:0004457!3.97e-25!12;UBERON:0000042!3.97e-25!12;UBERON:0001443!2.87e-16!11;UBERON:0000043!6.63e-16!3;UBERON:0000310!8.34e-13!10;UBERON:0005406!6.35e-11!2;UBERON:0002384!2.13e-09!375;UBERON:0001013!2.65e-08!14;UBERON:0006915!1.81e-07!3;UBERON:0002018!1.81e-07!3;UBERON:0002217!1.81e-07!3;UBERON:0007616!1.81e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;4.72e-39;6!UBERON:0002358;4.72e-39;6!UBERON:0003684;4.72e-39;6!UBERON:0001178;4.72e-39;6!UBERON:0004457;4.34e-37;9!UBERON:0000042;4.34e-37;9!UBERON:0007846;5.17e-29;3!UBERON:0000043;5.17e-29;3!UBERON:0007845;5.17e-29;3!UBERON:0000310;2.31e-24;10!UBERON:0001443;3.81e-22;11!UBERON:0005406;1.40e-19;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.00e-39,6;UBERON:0002358,6.00e-39,6;UBERON:0003684,6.00e-39,6;UBERON:0001178,6.00e-39,6;UBERON:0007846,2.91e-29,3;UBERON:0000043,2.91e-29,3;UBERON:0007845,2.91e-29,3;UBERON:0004457,1.01e-27,12;UBERON:0000042,1.01e-27,12;UBERON:0000310,2.43e-24,10;UBERON:0001443,3.98e-22,11;UBERON:0005406,1.28e-19,2;UBERON:0002384,2.34e-08,371;UBERON:0009569,4.45e-07,112 | |||
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|short_description=p@chr19:18895812..18895830,- | |short_description=p@chr19:18895812..18895830,- | ||
}} | }} |
Latest revision as of 05:20, 26 July 2015
Short description: | p@chr19:18895812..18895830, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:18895812..18895830, - |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 1.00e-29 | 3 |
fibrocyte | 2.91e-29 | 3 |
tendon cell | 2.91e-29 | 3 |
adipocyte of omentum tissue | 3.20e-29 | 3 |
preadipocyte | 6.59e-28 | 12 |
GAG secreting cell | 5.20e-26 | 9 |
carbohydrate secreting cell | 5.20e-26 | 9 |
chondroblast | 2.41e-25 | 6 |
chondrocyte | 2.41e-25 | 6 |
fat cell | 1.08e-22 | 15 |
adipocyte of breast | 9.37e-21 | 2 |
stromal cell | 1.23e-20 | 28 |
extracellular matrix secreting cell | 1.34e-15 | 15 |
omentum preadipocyte | 3.20e-13 | 3 |
perirenal adipocyte cell | 9.05e-11 | 1 |
perirenal preadipocyte | 1.33e-10 | 1 |
mesenchymal cell | 6.59e-09 | 354 |
fibroblast | 7.00e-09 | 76 |
connective tissue cell | 1.13e-08 | 361 |
motile cell | 7.44e-08 | 386 |
multi fate stem cell | 7.57e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
omentum | 6.00e-39 | 6 |
peritoneum | 6.00e-39 | 6 |
abdominal cavity | 6.00e-39 | 6 |
visceral peritoneum | 6.00e-39 | 6 |
dense regular connective tissue | 2.91e-29 | 3 |
tendon | 2.91e-29 | 3 |
regular connective tissue | 2.91e-29 | 3 |
cavity lining | 1.01e-27 | 12 |
serous membrane | 1.01e-27 | 12 |
breast | 2.43e-24 | 10 |
chest | 3.98e-22 | 11 |
perirenal fat | 1.28e-19 | 2 |
connective tissue | 2.34e-08 | 371 |
subdivision of trunk | 4.45e-07 | 112 |