FFCP PHASE1:Hg19::chr17:579589..579596,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55275 | |EntrezGene=55275 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25608 | |HGNC=25608 | ||
|TSSclassifier=strong | |||
|UniProt=B1AA16 | |UniProt=B1AA16 | ||
|association_with_transcript=50bp_to_uc002frk.2_5end | |association_with_transcript=50bp_to_uc002frk.2_5end | ||
|cluster_id=chr17:579589..579596,- | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_9_at_VPS53_5end | |description=CAGE_peak_9_at_VPS53_5end | ||
|id=chr17:579589..579596,- | |id=chr17:579589..579596,- | ||
|ontology_enrichment_celltype=CL:0002579!1.89e-09!3;CL:1000306!2.89e-07!4;CL:0002547!2.89e-07!4;CL:0000153!5.25e-07!9;CL:0000447!5.25e-07!9 | |ontology_enrichment_celltype=CL:0002579!1.89e-09!3;CL:1000306!2.89e-07!4;CL:0002547!2.89e-07!4;CL:0000153!5.25e-07!9;CL:0000447!5.25e-07!9 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.39e-66;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.02e-09!115;UBERON:0001301!1.15e-07!1;UBERON:0000415!2.89e-07!4;UBERON:0007240!2.89e-07!4;UBERON:0005742!2.89e-07!4;UBERON:0005734!2.89e-07!4;UBERON:0004664!2.89e-07!4;UBERON:0004663!2.89e-07!4;UBERON:0001950!3.86e-07!20 | |ontology_enrichment_uberon=UBERON:0007023!4.02e-09!115;UBERON:0001301!1.15e-07!1;UBERON:0000415!2.89e-07!4;UBERON:0007240!2.89e-07!4;UBERON:0005742!2.89e-07!4;UBERON:0005734!2.89e-07!4;UBERON:0004664!2.89e-07!4;UBERON:0004663!2.89e-07!4;UBERON:0001950!3.86e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.27e-34;6!UBERON:0002680;2.62e-23;9!UBERON:0001895;2.62e-23;9!UBERON:0004733;6.76e-18;12!UBERON:0002028;6.76e-18;12!UBERON:0004732;1.21e-16;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,4.27e-34,6;UBERON:0006215,4.27e-34,6;UBERON:0002680,2.62e-23,9;UBERON:0001895,2.62e-23,9;UBERON:0010092,2.62e-23,9;UBERON:0004733,6.76e-18,12;UBERON:0002028,6.76e-18,12;UBERON:0007277,6.76e-18,12;UBERON:0004732,1.21e-16,13;UBERON:0003076,1.22e-14,15;UBERON:0003057,1.22e-14,15 | |||
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|short_description=p9@VPS53 | |short_description=p9@VPS53 | ||
}} | }} |
Latest revision as of 13:54, 16 September 2015
Short description: | p9@VPS53 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VPS53_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 50bp_to_uc002frk.2_5end |
EntrezGene: | VPS53 |
HGNC: | 25608 |
UniProt: | B1AA16 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 4.27e-34 | 6 |
rhombic lip | 4.27e-34 | 6 |
regional part of metencephalon | 2.62e-23 | 9 |
metencephalon | 2.62e-23 | 9 |
future metencephalon | 2.62e-23 | 9 |
segmental subdivision of hindbrain | 6.76e-18 | 12 |
hindbrain | 6.76e-18 | 12 |
presumptive hindbrain | 6.76e-18 | 12 |
segmental subdivision of nervous system | 1.21e-16 | 13 |
posterior neural tube | 1.22e-14 | 15 |
chordal neural plate | 1.22e-14 | 15 |