FFCP PHASE1:Hg19::chr16:88770190..88770215,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:88770190..88770215,+ | |||
|coexpression_cluster_id=C3601 | |coexpression_cluster_id=C3601 | ||
|description=CAGE_peak_at_chr16:88770190..88770215,+ | |description=CAGE_peak_at_chr16:88770190..88770215,+ | ||
|id=chr16:88770190..88770215,+ | |id=chr16:88770190..88770215,+ | ||
|ontology_enrichment_celltype=CL:0000037!5.31e-50!172;CL:0000566!5.31e-50!172;CL:0000988!9.53e-46!182;CL:0002032!2.58e-45!165;CL:0000837!2.58e-45!165;CL:0000738!6.46e-45!140;CL:0002087!6.67e-38!119;CL:0002031!2.42e-36!124;CL:0000763!1.05e-28!112;CL:0000049!1.05e-28!112;CL:0000766!1.05e-26!76;CL:0000791!6.51e-25!18;CL:0000789!6.51e-25!18;CL:0002420!6.51e-25!18;CL:0002419!6.51e-25!18;CL:0000790!6.51e-25!18;CL:0000084!5.05e-22!25;CL:0000827!5.05e-22!25;CL:0000557!4.07e-21!71;CL:0002057!1.23e-20!42;CL:0000839!3.31e-20!70;CL:0002009!4.73e-20!65;CL:0002194!1.30e-19!63;CL:0000576!1.30e-19!63;CL:0000040!1.30e-19!63;CL:0000559!1.30e-19!63;CL:0000860!1.16e-18!45;CL:0000625!5.83e-18!11;CL:0000838!4.58e-15!52;CL:0000542!1.27e-14!53;CL:0000051!1.27e-14!53;CL:0000134!8.93e-11!358;CL:0000624!2.15e-10!6;CL:0002320!3.87e-10!365;CL:0002393!3.26e-09!9;CL:0002397!3.26e-09!9;CL:0000219!7.33e-09!390;CL:0000094!1.41e-07!8 | |ontology_enrichment_celltype=CL:0000037!5.31e-50!172;CL:0000566!5.31e-50!172;CL:0000988!9.53e-46!182;CL:0002032!2.58e-45!165;CL:0000837!2.58e-45!165;CL:0000738!6.46e-45!140;CL:0002087!6.67e-38!119;CL:0002031!2.42e-36!124;CL:0000763!1.05e-28!112;CL:0000049!1.05e-28!112;CL:0000766!1.05e-26!76;CL:0000791!6.51e-25!18;CL:0000789!6.51e-25!18;CL:0002420!6.51e-25!18;CL:0002419!6.51e-25!18;CL:0000790!6.51e-25!18;CL:0000084!5.05e-22!25;CL:0000827!5.05e-22!25;CL:0000557!4.07e-21!71;CL:0002057!1.23e-20!42;CL:0000839!3.31e-20!70;CL:0002009!4.73e-20!65;CL:0002194!1.30e-19!63;CL:0000576!1.30e-19!63;CL:0000040!1.30e-19!63;CL:0000559!1.30e-19!63;CL:0000860!1.16e-18!45;CL:0000625!5.83e-18!11;CL:0000838!4.58e-15!52;CL:0000542!1.27e-14!53;CL:0000051!1.27e-14!53;CL:0000134!8.93e-11!358;CL:0000624!2.15e-10!6;CL:0002320!3.87e-10!365;CL:0002393!3.26e-09!9;CL:0002397!3.26e-09!9;CL:0000219!7.33e-09!390;CL:0000094!1.41e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.65e-52;18!CL:0000789;2.65e-52;18!CL:0002419;2.65e-52;18!CL:0000084;1.54e-36;25!CL:0000625;1.95e-34;11!CL:0000624;8.68e-23;6!CL:0000623;2.81e-13;3!CL:0000094;1.70e-12;8!CL:0000898;2.51e-12;3!CL:0000542;4.85e-11;53!CL:0000081;5.42e-09;11!CL:0000815;1.61e-08;2!CL:0000792;1.61e-08;2!CL:0002677;1.61e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.37e-52,18;CL:0000789,1.37e-52,18;CL:0002420,1.37e-52,18;CL:0002419,1.37e-52,18;CL:0000790,1.37e-52,18;CL:0000084,9.69e-37,25;CL:0000827,9.69e-37,25;CL:0000625,1.31e-34,11;CL:0000738,3.28e-23,136;CL:0000838,5.67e-23,52;CL:0000624,6.42e-23,6;CL:0000542,1.90e-22,53;CL:0000051,1.90e-22,53;CL:0000037,2.65e-17,168;CL:0002087,2.32e-16,115;CL:0000988,4.99e-16,177;CL:0002032,2.17e-14,161;CL:0000837,2.17e-14,161;CL:0002031,7.09e-14,120;CL:0000623,2.93e-13,3;CL:0000825,2.93e-13,3;CL:0000094,1.70e-12,8;CL:0000898,2.38e-12,3;CL:0000081,5.43e-09,11;CL:0000815,1.35e-08,2;CL:0000792,1.35e-08,2;CL:0002677,1.35e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;2.65e-52;18!CL:0000051;4.85e-11;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.01e-28!102;UBERON:0003061!4.01e-28!102;UBERON:0002193!3.25e-25!112;UBERON:0002371!1.35e-18!80;UBERON:0001474!1.80e-16!86;UBERON:0002405!4.28e-13!115;UBERON:0004765!2.48e-12!101;UBERON:0001434!2.48e-12!101;UBERON:0000178!1.86e-09!15;UBERON:0000179!1.86e-09!15;UBERON:0000463!1.86e-09!15;UBERON:0002384!2.79e-09!375;UBERON:0003081!1.03e-08!216 | |ontology_enrichment_uberon=UBERON:0002390!4.01e-28!102;UBERON:0003061!4.01e-28!102;UBERON:0002193!3.25e-25!112;UBERON:0002371!1.35e-18!80;UBERON:0001474!1.80e-16!86;UBERON:0002405!4.28e-13!115;UBERON:0004765!2.48e-12!101;UBERON:0001434!2.48e-12!101;UBERON:0000178!1.86e-09!15;UBERON:0000179!1.86e-09!15;UBERON:0000463!1.86e-09!15;UBERON:0002384!2.79e-09!375;UBERON:0003081!1.03e-08!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.42e-12;15!UBERON:0000179;7.42e-12;15!UBERON:0000463;7.42e-12;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.12e-12,15;UBERON:0000179,6.12e-12,15;UBERON:0000463,6.12e-12,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,3.93364276848904,6.1412703695554,0.928896739896456,0,0,0,0.0774672005803016,0,0.587200878669695,0.553995408531877,0.802177789880567,1.73608696572681,0,0,0.257575567634187,1.16318591023652,0,1.94067248950253,0.232429036905685,0.822335776043652,0.619412741790207,0,0,0.236482229888585,0.344745680736619,0.645484683583826,0,0.564727018627814,0,0.449446968890169,0.306083892370903,0,1.27867425159808,0,0.199463657621632,0.852449501065388,0.580418477257168,0,0,0,0,0.434377689410233,0,0.368277635987565,0.316462387440884,0.845021145247767,0.212604299965044,0,0.44931452458598,0.750884464207532,0.32145117339416,0.285012743741249,0.19891667719909,1.0959849225878,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,1.68152568894461,0,2.360517241366,3.53709686474248,1.85041349099558,3.67810289859492,1.62961133316795,0,0,2.1167986808183,2.94605907474837,1.10766947291811,1.89562704635511,1.79327847615945,2.08094956095805,0.328875809207352,1.38175008892924,2.60822777161547,1.4828656316206,0,1.04535523804977,2.03956816855619,4.21542542962113,0.34362744548263,2.02415753615602,2.86708872891687,3.90650072313851,0.950452044448374,1.80690142893327,1.27986611154418,3.74792179657038,2.36777252044017,4.92676798152628,7.05623601286563,6.15112450302067,4.63438092424957,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.664789802594326,0.238490624305342,1.71598473234038,0,0,0,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0.183201743930407,13.1780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0,0,0,0,1.58487181223807,0.207328115540772,0,0.12624243342638,0,0.381988425558278,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,5.91092280605782,5.39068937148793,4.62034930607094,0,0,0,0,0,1.49801404789436,0,3.72973962092432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9624326269493,0.647142602455851,4.37582986994122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04468565539302,1.52927441428475,1.70894156152249,0.952927101831156,0.822724546172388,1.94541993357815,0,4.75875105776562,0,0,0,0,0,0.0711418433484141,0.159426272728822,0.199579371432817,0.766021480529467,0.846694330895531,0.324621940274555,0.842391534340376,0.912938716132769,0,0,0.338583555603207,0.481764225311099,0.403599414382095,0,0,0.307240764308458,0,0.333698283423817,0,0.278406173895242,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.202056159043763,0.143444410785353,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,3.93364276848904,6.1412703695554,0.928896739896456,0,0,0,0.0774672005803016,0,0.587200878669695,0.553995408531877,0.802177789880567,1.73608696572681,0,0,0.257575567634187,1.16318591023652,0,1.94067248950253,0.232429036905685,0.822335776043652,0.619412741790207,0,0,0.236482229888585,0.344745680736619,0.645484683583826,0,0.564727018627814,0,0.449446968890169,0.306083892370903,0,1.27867425159808,0,0.199463657621632,0.852449501065388,0.580418477257168,0,0,0,0,0.434377689410233,0,0.368277635987565,0.316462387440884,0.845021145247767,0.212604299965044,0,0.44931452458598,0.750884464207532,0.32145117339416,0.285012743741249,0.19891667719909,1.0959849225878,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,1.68152568894461,0,2.360517241366,3.53709686474248,1.85041349099558,3.67810289859492,1.62961133316795,0,0,2.1167986808183,2.94605907474837,1.10766947291811,1.89562704635511,1.79327847615945,2.08094956095805,0.328875809207352,1.38175008892924,2.60822777161547,1.4828656316206,0,1.04535523804977,2.03956816855619,4.21542542962113,0.34362744548263,2.02415753615602,2.86708872891687,3.90650072313851,0.950452044448374,1.80690142893327,1.27986611154418,3.74792179657038,2.36777252044017,4.92676798152628,7.05623601286563,6.15112450302067,4.63438092424957,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.664789802594326,0.238490624305342,1.71598473234038,0,0,0,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0.183201743930407,13.1780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0,0,0,0,1.58487181223807,0.207328115540772,0,0.12624243342638,0,0.381988425558278,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,5.91092280605782,5.39068937148793,4.62034930607094,0,0,0,0,0,1.49801404789436,0,3.72973962092432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9624326269493,0.647142602455851,4.37582986994122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04468565539302,1.52927441428475,1.70894156152249,0.952927101831156,0.822724546172388,1.94541993357815,0,4.75875105776562,0,0,0,0,0,0.0711418433484141,0.159426272728822,0.199579371432817,0.766021480529467,0.846694330895531,0.324621940274555,0.842391534340376,0.912938716132769,0,0,0.338583555603207,0.481764225311099,0.403599414382095,0,0,0.307240764308458,0,0.333698283423817,0,0.278406173895242,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.202056159043763,0.143444410785353,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p@chr16:88770190..88770215,+ | |short_description=p@chr16:88770190..88770215,+ | ||
}} | }} |
Latest revision as of 13:21, 25 July 2015
Short description: | p@chr16:88770190..88770215, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:88770190..88770215, + |
Coexpression cluster: | C3601_Eosinophils_CD8_Natural_CD4_Basophils_Neutrophils_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.37e-52 | 18 |
alpha-beta T cell | 1.37e-52 | 18 |
immature T cell | 1.37e-52 | 18 |
mature T cell | 1.37e-52 | 18 |
immature alpha-beta T cell | 1.37e-52 | 18 |
T cell | 9.69e-37 | 25 |
pro-T cell | 9.69e-37 | 25 |
CD8-positive, alpha-beta T cell | 1.31e-34 | 11 |
leukocyte | 3.28e-23 | 136 |
lymphoid lineage restricted progenitor cell | 5.67e-23 | 52 |
CD4-positive, alpha-beta T cell | 6.42e-23 | 6 |
lymphocyte | 1.90e-22 | 53 |
common lymphoid progenitor | 1.90e-22 | 53 |
hematopoietic stem cell | 2.65e-17 | 168 |
nongranular leukocyte | 2.32e-16 | 115 |
hematopoietic cell | 4.99e-16 | 177 |
hematopoietic oligopotent progenitor cell | 2.17e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.17e-14 | 161 |
hematopoietic lineage restricted progenitor cell | 7.09e-14 | 120 |
natural killer cell | 2.93e-13 | 3 |
pro-NK cell | 2.93e-13 | 3 |
granulocyte | 1.70e-12 | 8 |
naive T cell | 2.38e-12 | 3 |
blood cell | 5.43e-09 | 11 |
regulatory T cell | 1.35e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.35e-08 | 2 |
naive regulatory T cell | 1.35e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 6.12e-12 | 15 |
haemolymphatic fluid | 6.12e-12 | 15 |
organism substance | 6.12e-12 | 15 |