FFCP PHASE1:Hg19::chr16:87874679..87874710,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:87874679..87874710,- | |||
|coexpression_cluster_id=C570 | |coexpression_cluster_id=C570 | ||
|description=CAGE_peak_at_chr16:87874679..87874710,- | |description=CAGE_peak_at_chr16:87874679..87874710,- | ||
|id=chr16:87874679..87874710,- | |id=chr16:87874679..87874710,- | ||
|ontology_enrichment_celltype=CL:0000066!4.00e-23!254;CL:0002076!3.85e-12!43;CL:0000223!1.51e-11!59;CL:0000063!3.80e-10!578;CL:0000012!1.34e-08!682;CL:0002368!1.73e-08!13;CL:0000548!4.15e-08!679;CL:0000004!4.15e-08!679;CL:0000255!4.15e-08!679;CL:0002077!1.56e-07!33;CL:0000003!2.75e-07!722 | |ontology_enrichment_celltype=CL:0000066!4.00e-23!254;CL:0002076!3.85e-12!43;CL:0000223!1.51e-11!59;CL:0000063!3.80e-10!578;CL:0000012!1.34e-08!682;CL:0002368!1.73e-08!13;CL:0000548!4.15e-08!679;CL:0000004!4.15e-08!679;CL:0000255!4.15e-08!679;CL:0002077!1.56e-07!33;CL:0000003!2.75e-07!722 | ||
|ontology_enrichment_celltype_v019=CL:0002368;7.13e-14;13!CL:0002076;9.91e-13;42!CL:0002202;5.39e-10;9!CL:0002632;5.39e-10;9!CL:0002077;1.60e-08;34!CL:0002159;1.82e-07;14!CL:0002328;2.60e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.72e-22,253;CL:0002076,5.72e-18,42;CL:0000223,9.62e-15,58;CL:0002368,1.21e-13,13;CL:0002077,6.81e-10,34;CL:0002202,9.48e-10,9;CL:0002632,9.48e-10,9;CL:0002159,1.42e-07,14;CL:0002328,2.33e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.66e-08;58 | |||
|ontology_enrichment_disease=DOID:0050687!5.14e-15!143;DOID:305!2.15e-14!106;DOID:162!8.10e-14!235;DOID:14566!1.00e-12!239 | |ontology_enrichment_disease=DOID:0050687!5.14e-15!143;DOID:305!2.15e-14!106;DOID:162!8.10e-14!235;DOID:14566!1.00e-12!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.51e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.12e-07,106;DOID:1749,4.39e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000065!8.06e-07!53 | |ontology_enrichment_uberon=UBERON:0000065!8.06e-07!53 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.55e-11;9!UBERON:0001557;5.55e-11;9!UBERON:0000065;3.79e-09;44!UBERON:0000072;1.41e-08;37!UBERON:0003343;3.69e-08;4!UBERON:0004785;3.69e-08;4!UBERON:0004815;2.60e-07;3!UBERON:0002031;2.60e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.86e-11,9;UBERON:0001004,1.89e-10,74;UBERON:0000065,2.23e-10,54;UBERON:0008947,2.74e-09,38;UBERON:0003258,2.74e-09,38;UBERON:0000072,1.13e-08,47;UBERON:0003343,5.28e-08,4;UBERON:0004785,5.28e-08,4;UBERON:0004119,9.18e-08,160;UBERON:0000925,9.18e-08,160;UBERON:0006595,9.18e-08,160;UBERON:0004815,2.33e-07,3;UBERON:0002031,2.33e-07,3;UBERON:0005157,5.15e-07,47;UBERON:0001557,5.80e-07,19 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.422863212287913,0,0,0,0,0,0.261185628199839,0.491467873003018,0.697801167972428,1.31064823278103,0.527533956456907,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0.313454721478088,0,0,0.125542639594803,0,0.164201178899891,0.236132343941038,0.393364276848904,0,0,3.67768489791571,3.91567694411725,7.76483421350254,0.0774672005803016,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0,0,0,0.145398238779565,0.377875943688809,0,0.464858073811369,2.05583944010913,0.309706370895104,0.28769239232215,0.512321413058201,0.236482229888585,1.72372840368309,0,0,0.376484679085209,0,0,1.22433556948361,1.92557416245656,0,0,0.598390972864896,0,2.61188314765726,1.70215567407342,2.4912889959823,0.502497330513487,0.521482918420201,0.217188844705117,3.02699751316684,1.47311054395026,1.26584954976354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.68152568894461,0,0,0.393010762749165,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0.270803863765016,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0.403213486449465,1.33720097891754,0,0,0,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0,0.0945348171640679,0.443458794925128,0.43917392846563,0.0654895377488563,2.18577172975525,2.96627554227544,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,1.74437620857014,0,0.633152558322899,0,0.860509862246441,0.354668382198357,0.560677600142307,0,1.2333377420858,0.311211035399766,0.67355336034844,0,0,0,0.70296429550139,0,0,0.298897361103602,0.587172493218824,0,0.561803226808994,0,0.122834317311768,0,0,0.989067717114227,0,0,0,0.125118519871964,0,0,0,0.600952235626387,0.113432183160021,0.179389635688862,0.427114777637135,0,0.900273288253207,0.618315175430633,0,0.18611685633159,0.337552664482532,0.194874010322397,0,0.0920498986422993,0,0.355009592516614,0.10075209822764,0,0.386521706326594,0.272746120590835,1.14721838155602,0.121973706129595,0,0.232387885739037,0,0.252320850875628,0,0,0.643240938192885,0,0,0,1.0647612003586,1.68584690078102,1.20505514941741,1.7647035637183,1.08939722046203,1.18635309555548,1.34831308160164,0.196221465125346,1.92373578473195,0,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0.343135620597051,1.86575485194663,3.37205259772859,1.20634766893957,0.648119116109707,0.651616610620649,1.03993478527958,1.44331342025273,0,0.821860859650752,0.144366447761074,0,0,0,0,0,0,0,0,1.17587489739202,0,1.34337784054272,1.16253575405585,2.30029607499127,0.985326475791887,0.176096868026452,0,0,0,0.825472625798197,0.763976851116555,1.17217447210047,0,1.7480673759565,1.8020583470635,2.00078502841405,0.336393253036082,0.43596006883328,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.428933980974443,0,0.823240336780769,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0.718874566474748,1.14861935834114,0,0,0.205476322550383,0.179060963239896,0.224170287987055,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,1.96271887676878,0.315404830067869,0.35142424497814,0.300946099727719,2.27407504055985,0,0.664225598535437,0,0.260650843404249,0.195801157462741,0,0,0,0.106727557803444,0.606255142892519,1.66435439510497,3.0239029332968,0.496215615637554,0,1.12264037773229,1.02511319404561,0,0.160853921143607,0,0,0.355123450626254,0,0,0,0.362578348774867,3.00759705454927,6.81399318125633,0.114814448164607,0.182091168006717,0.524497659837696,0,0.15403067420883,0.784349769176855,0,0.105551628892876,0,0,0,0,0.541892875087706,0.501689773854853,0,0,0.223874754722178,1.09629938322967,1.0457418040996,0,0,0.325378394664303,0,0.366277859273374,0.165018999841176,1.72279661398852,9.1008434445113,1.6068392984416,1.25671933779759,0,0,0.413509717453592,0.107420244868274,0,0.0852266274161009,0.0890320356467374,4.79326254546837,3.84380134730212,0.765676274967505,3.6416801107998,0,0.94443704049192,0,0,0,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0,0.255897791311334,0.855877976067841,0,0.78494864019923,0.359744915166629,0,0.117812402345686,0,0,0,0,0,1.05650146756755,0.272999822815972,1.1312434556297,1.13008116620243,0,0,0.876901770507525,0,0,0,0,0.281695602532241,0,0,0,0.354761064070598,0,0,0,0.349934720244983,1.25088746543166,1.34060455107157,6.53345909167936,0.0941438007767792,3.44404298136984,1.68471475667626,0.886860307073351,0.229723400206959,0.507447609232169,0.764637207142375,0,0,0,0,0,0.79312517629427,0.106824071127473,1.92495971052672,1.22520107990516,0.185803175125719,0,0.640276590135727,0.637705090915289,0,0,1.48171507906718,0.324621940274555,0,0,0,0,0,0.321176150207399,0.201799707191048,0.425846237690326,0.343505344755765,0,0,0,0.19538809540204,0,0,0.540911356951966,0,0,0.561421621224659,0,0.121360521749513,0.222886768554957,0.284136146806413,0.23874448473769,0.296964680832639,0,0,0,0.222617410045812,0.824019371133798,0.211125408127993,0,0,0,0.20453736500431,0.246169610922139,0.311039587661807,0.3594734045893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| ||
|short_description=p@chr16:87874679..87874710,- | |short_description=p@chr16:87874679..87874710,- | ||
}} | }} |
Latest revision as of 13:14, 25 July 2015
Short description: | p@chr16:87874679..87874710, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:87874679..87874710, - |
Coexpression cluster: | C570_oral_Prostate_Esophageal_Mammary_Corneal_Keratinocyte_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.72e-22 | 253 |
endo-epithelial cell | 5.72e-18 | 42 |
endodermal cell | 9.62e-15 | 58 |
respiratory epithelial cell | 1.21e-13 | 13 |
ecto-epithelial cell | 6.81e-10 | 34 |
epithelial cell of tracheobronchial tree | 9.48e-10 | 9 |
epithelial cell of lower respiratory tract | 9.48e-10 | 9 |
general ecto-epithelial cell | 1.42e-07 | 14 |
bronchial epithelial cell | 2.33e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.86e-11 | 9 |
respiratory system | 1.89e-10 | 74 |
respiratory tract | 2.23e-10 | 54 |
respiratory primordium | 2.74e-09 | 38 |
endoderm of foregut | 2.74e-09 | 38 |
segment of respiratory tract | 1.13e-08 | 47 |
mucosa of oral region | 5.28e-08 | 4 |
respiratory system mucosa | 5.28e-08 | 4 |
endoderm-derived structure | 9.18e-08 | 160 |
endoderm | 9.18e-08 | 160 |
presumptive endoderm | 9.18e-08 | 160 |
lower respiratory tract epithelium | 2.33e-07 | 3 |
epithelium of bronchus | 2.33e-07 | 3 |
epithelial fold | 5.15e-07 | 47 |
upper respiratory tract | 5.80e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.12e-07 | 106 |
squamous cell carcinoma | 4.39e-07 | 14 |