FFCP PHASE1:Hg19::chr16:50664175..50664188,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:50664175..50664188,+ | |||
|coexpression_cluster_id=C101 | |coexpression_cluster_id=C101 | ||
|description=CAGE_peak_at_chr16:50664175..50664188,+ | |description=CAGE_peak_at_chr16:50664175..50664188,+ | ||
|id=chr16:50664175..50664188,+ | |id=chr16:50664175..50664188,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000182;5.48e-22;12!CL:0002253;2.74e-15;2!CL:0002563;2.61e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.48e-22,12;CL:0002253,2.74e-15,2;CL:0002563,2.61e-08,4;CL:0000223,2.67e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;6.61e-24;11!UBERON:0009497;2.31e-20;13!UBERON:0001041;1.29e-15;30!UBERON:0003104;5.95e-15;31 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0050619;2.73e-29;1!DOID:1357;2.73e-29;1!DOID:3119;4.38e-09;14!DOID:5409;2.35e-08;4!DOID:0050615;5.09e-08;16!DOID:7;1.29e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,3.16e-29,1;DOID:1357,3.16e-29,1;DOID:305,7.30e-10,106;DOID:3119,4.38e-09,14;DOID:5409,2.26e-08,4;DOID:0050615,5.09e-08,16;DOID:0050687,2.39e-07,143;DOID:7,2.91e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.15e-24!115;UBERON:0001049!6.09e-17!57;UBERON:0005068!6.09e-17!57;UBERON:0006241!6.09e-17!57;UBERON:0007135!6.09e-17!57;UBERON:0003075!5.68e-14!86;UBERON:0007284!5.68e-14!86;UBERON:0002346!4.76e-13!90;UBERON:0002616!5.89e-13!59;UBERON:0002780!6.76e-13!41;UBERON:0001890!6.76e-13!41;UBERON:0006240!6.76e-13!41;UBERON:0003080!1.69e-12!42;UBERON:0005743!2.06e-12!86;UBERON:0001893!3.14e-12!34;UBERON:0001017!4.45e-12!82;UBERON:0000073!1.04e-11!94;UBERON:0001016!1.04e-11!94;UBERON:0000955!2.55e-11!69;UBERON:0006238!2.55e-11!69;UBERON:0002791!5.08e-11!33;UBERON:0002020!1.31e-10!34;UBERON:0003528!1.31e-10!34;UBERON:0003056!1.12e-09!61;UBERON:0001869!1.30e-09!32;UBERON:0000025!2.44e-09!194;UBERON:0002619!8.91e-09!22;UBERON:0004111!3.93e-08!241;UBERON:0001950!7.87e-08!20;UBERON:0000956!1.55e-07!25;UBERON:0000203!1.55e-07!25;UBERON:0000153!4.64e-07!129;UBERON:0007811!4.64e-07!129;UBERON:0000033!5.33e-07!123;UBERON:0000477!7.63e-07!286 | |ontology_enrichment_uberon=UBERON:0007023!2.15e-24!115;UBERON:0001049!6.09e-17!57;UBERON:0005068!6.09e-17!57;UBERON:0006241!6.09e-17!57;UBERON:0007135!6.09e-17!57;UBERON:0003075!5.68e-14!86;UBERON:0007284!5.68e-14!86;UBERON:0002346!4.76e-13!90;UBERON:0002616!5.89e-13!59;UBERON:0002780!6.76e-13!41;UBERON:0001890!6.76e-13!41;UBERON:0006240!6.76e-13!41;UBERON:0003080!1.69e-12!42;UBERON:0005743!2.06e-12!86;UBERON:0001893!3.14e-12!34;UBERON:0001017!4.45e-12!82;UBERON:0000073!1.04e-11!94;UBERON:0001016!1.04e-11!94;UBERON:0000955!2.55e-11!69;UBERON:0006238!2.55e-11!69;UBERON:0002791!5.08e-11!33;UBERON:0002020!1.31e-10!34;UBERON:0003528!1.31e-10!34;UBERON:0003056!1.12e-09!61;UBERON:0001869!1.30e-09!32;UBERON:0000025!2.44e-09!194;UBERON:0002619!8.91e-09!22;UBERON:0004111!3.93e-08!241;UBERON:0001950!7.87e-08!20;UBERON:0000956!1.55e-07!25;UBERON:0000203!1.55e-07!25;UBERON:0000153!4.64e-07!129;UBERON:0007811!4.64e-07!129;UBERON:0000033!5.33e-07!123;UBERON:0000477!7.63e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0001764;2.73e-29;1!UBERON:0001825;2.73e-29;1!UBERON:0002107;3.46e-14;19!UBERON:0006925;3.46e-14;19!UBERON:0002423;5.84e-11;25!UBERON:0002365;2.42e-08;31!UBERON:0002330;2.42e-08;31!UBERON:0001052;2.61e-08;4!UBERON:0001242;2.61e-08;4!UBERON:0001262;2.61e-08;4!UBERON:0004786;2.61e-08;4!UBERON:0004808;2.61e-08;4!UBERON:0001277;2.61e-08;4!UBERON:0002368;6.92e-08;33!UBERON:0004907;6.77e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001764,3.16e-29,1;UBERON:0001825,3.16e-29,1;UBERON:0002107,3.46e-14,19;UBERON:0006925,3.46e-14,19;UBERON:0008836,3.46e-14,19;UBERON:0008835,2.35e-12,22;UBERON:0003894,2.35e-12,22;UBERON:0009854,7.52e-12,23;UBERON:0007499,5.84e-11,25;UBERON:0009497,5.84e-11,25;UBERON:0000015,5.84e-11,25;UBERON:0002423,5.84e-11,25;UBERON:0006235,5.84e-11,25;UBERON:0004161,5.84e-11,25;UBERON:0009856,1.45e-10,26;UBERON:0002365,5.69e-09,31;UBERON:0002330,5.69e-09,31;UBERON:0005911,5.90e-09,82;UBERON:0003929,6.97e-09,54;UBERON:0001052,2.61e-08,4;UBERON:0001242,2.61e-08,4;UBERON:0001262,2.61e-08,4;UBERON:0004786,2.61e-08,4;UBERON:0004808,2.61e-08,4;UBERON:0001277,2.61e-08,4;UBERON:0002368,5.08e-08,35;UBERON:0004907,6.77e-07,5 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08194319871046,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0,0,0,6.53900413149956,5.93394180344398,5.52709059604316,0,0,0,0.272406812223151,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,2.82697373250422,0,0,0.1251909307065,0,0.443716206147409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295712172434091,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0.280272163313789,0,0,0,0.214429632529969,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,8.55488333193883,0,2.93659813301296,0.109940516745429,0,0,0,0,0.245148321753905,0,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.20686599172379,0,0,0.0645889098360061,0,0,0,0,0,0.684466602170562,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08194319871046,0,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0,0,0,6.53900413149956,5.93394180344398,5.52709059604316,0,0,0,0.272406812223151,0,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0.26446520348538,0,0,0.320362237703084,0,0,0,0,0,0,0,0,0,0,2.82697373250422,0,0,0.1251909307065,0,0.443716206147409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0.205116364240755,0,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295712172434091,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0.280272163313789,0,0,0,0.214429632529969,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,8.55488333193883,0,2.93659813301296,0.109940516745429,0,0,0,0,0.245148321753905,0,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0.829169439458779,0.20686599172379,0,0,0.0645889098360061,0,0,0,0,0,0.684466602170562,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr16:50664175..50664188,+ | |short_description=p@chr16:50664175..50664188,+ | ||
}} | }} |
Latest revision as of 09:32, 25 July 2015
Short description: | p@chr16:50664175..50664188, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:50664175..50664188, + |
Coexpression cluster: | C101_small_cerebellum_maxillary_colon_parietal_epididymis_merkel |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.48e-22 | 12 |
epithelial cell of large intestine | 2.74e-15 | 2 |
intestinal epithelial cell | 2.61e-08 | 4 |
endodermal cell | 2.67e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
maxillary sinus | 3.16e-29 | 1 |
paranasal sinus | 3.16e-29 | 1 |
liver | 3.46e-14 | 19 |
digestive gland | 3.46e-14 | 19 |
liver bud | 3.46e-14 | 19 |
hepatic diverticulum | 2.35e-12 | 22 |
liver primordium | 2.35e-12 | 22 |
digestive tract diverticulum | 7.52e-12 | 23 |
epithelial sac | 5.84e-11 | 25 |
epithelium of foregut-midgut junction | 5.84e-11 | 25 |
anatomical boundary | 5.84e-11 | 25 |
hepatobiliary system | 5.84e-11 | 25 |
foregut-midgut junction | 5.84e-11 | 25 |
septum transversum | 5.84e-11 | 25 |
sac | 1.45e-10 | 26 |
exocrine gland | 5.69e-09 | 31 |
exocrine system | 5.69e-09 | 31 |
endo-epithelium | 5.90e-09 | 82 |
gut epithelium | 6.97e-09 | 54 |
rectum | 2.61e-08 | 4 |
intestinal mucosa | 2.61e-08 | 4 |
wall of intestine | 2.61e-08 | 4 |
gastrointestinal system mucosa | 2.61e-08 | 4 |
gastrointestinal system epithelium | 2.61e-08 | 4 |
intestinal epithelium | 2.61e-08 | 4 |
endocrine gland | 5.08e-08 | 35 |
lower digestive tract | 6.77e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 3.16e-29 | 1 |
maxillary sinus cancer | 3.16e-29 | 1 |
carcinoma | 7.30e-10 | 106 |
gastrointestinal system cancer | 4.38e-09 | 14 |
lung small cell carcinoma | 2.26e-08 | 4 |
respiratory system cancer | 5.09e-08 | 16 |
cell type cancer | 2.39e-07 | 143 |
disease of anatomical entity | 2.91e-07 | 39 |