FFCP PHASE1:Hg19::chr15:49255230..49255248,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=399694 | |EntrezGene=399694 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16743 | |HGNC=16743 | ||
|TSSclassifier=strong | |||
|UniProt=Q6S5L8 | |UniProt=Q6S5L8 | ||
|association_with_transcript=392bp_to_ENST00000332408,NM_203349,uc001zxb.1_5end | |association_with_transcript=392bp_to_ENST00000332408,NM_203349,uc001zxb.1_5end | ||
|cluster_id=chr15:49255230..49255248,- | |||
|coexpression_cluster_id=C139 | |coexpression_cluster_id=C139 | ||
|description=CAGE_peak_16_at_SHC4_5end | |description=CAGE_peak_16_at_SHC4_5end | ||
|id=chr15:49255230..49255248,- | |id=chr15:49255230..49255248,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002363;4.52e-50;2!CL:0000128;1.65e-15;7!CL:0000126;1.65e-15;7!CL:0000127;1.65e-15;7!CL:0000243;3.38e-07;15!CL:0000125;3.38e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002363,4.52e-50,2;CL:0000008,4.52e-50,2;CL:0000128,1.65e-15,7;CL:0000126,1.65e-15,7;CL:0000127,1.65e-15,7;CL:0002453,1.65e-15,7;CL:0000333,1.77e-10,41;CL:0000133,9.44e-08,59;CL:0000243,3.38e-07,15;CL:0000125,3.38e-07,15;CL:0000030,3.38e-07,15;CL:0000339,3.38e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000008;4.52e-50;2!UBERON:0006238;2.16e-10;10!CL:0000339;3.38e-07;15!CL:0000133;3.42e-07;59 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;1.22e-09;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.22e-09,11 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0003566;4.52e-50;2!UBERON:0001777;4.52e-50;2!UBERON:0003891;7.14e-26;4!UBERON:0000964;7.14e-26;4!UBERON:0010409;7.14e-26;4!UBERON:0010313;3.02e-11;10!UBERON:0001801;2.00e-08;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003566,4.52e-50,2;UBERON:0001777,4.52e-50,2;UBERON:0003891,7.14e-26,4;UBERON:0000964,7.14e-26,4;UBERON:0010409,7.14e-26,4;UBERON:0004348,7.14e-26,4;UBERON:0005427,7.14e-26,4;UBERON:0010313,3.02e-11,10;UBERON:0002342,3.02e-11,10;UBERON:0005062,3.02e-11,10;UBERON:0001801,2.00e-08,14 | |||
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|short_description=p16@SHC4 | |short_description=p16@SHC4 | ||
}} | }} |
Latest revision as of 22:18, 17 September 2015
Short description: | p16@SHC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_SHC4_5end |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | 392bp_to_ENST00000332408, NM_203349, uc001zxb.1_5end |
EntrezGene: | SHC4 |
HGNC: | 16743 |
UniProt: | Q6S5L8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratocyte | 4.52e-50 | 2 |
migratory cranial neural crest cell | 4.52e-50 | 2 |
oligodendrocyte | 1.65e-15 | 7 |
macroglial cell | 1.65e-15 | 7 |
astrocyte | 1.65e-15 | 7 |
oligodendrocyte precursor cell | 1.65e-15 | 7 |
migratory neural crest cell | 1.77e-10 | 41 |
neurectodermal cell | 9.44e-08 | 59 |
glial cell (sensu Vertebrata) | 3.38e-07 | 15 |
glial cell | 3.38e-07 | 15 |
glioblast | 3.38e-07 | 15 |
glioblast (sensu Vertebrata) | 3.38e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
head connective tissue | 4.52e-50 | 2 |
substantia propria of cornea | 4.52e-50 | 2 |
stroma | 7.14e-26 | 4 |
cornea | 7.14e-26 | 4 |
eye surface | 7.14e-26 | 4 |
optic eminence | 7.14e-26 | 4 |
corneal primordium | 7.14e-26 | 4 |
neural crest-derived structure | 3.02e-11 | 10 |
neural crest | 3.02e-11 | 10 |
neural fold | 3.02e-11 | 10 |
anterior segment of eyeball | 2.00e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.22e-09 | 11 |