FFCP PHASE1:Hg19::chr15:42694558..42694570,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=825 | |EntrezGene=825 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1480 | |HGNC=1480 | ||
|TSSclassifier=strong | |||
|UniProt=P20807,Q9BQC8 | |UniProt=P20807,Q9BQC8 | ||
|association_with_transcript=-17bp_to_ENST00000397200,ENST00000466222,NM_173088,uc001zpq.1_5end | |association_with_transcript=-17bp_to_ENST00000397200,ENST00000466222,NM_173088,uc001zpq.1_5end | ||
|cluster_id=chr15:42694558..42694570,+ | |||
|coexpression_cluster_id=C88 | |coexpression_cluster_id=C88 | ||
|description=CAGE_peak_10_at_CAPN3_5end | |description=CAGE_peak_10_at_CAPN3_5end | ||
|id=chr15:42694558..42694570,+ | |id=chr15:42694558..42694570,+ | ||
|ontology_enrichment_celltype=CL:0000148!1.33e-29!10;CL:0000541!1.33e-29!10;CL:0002567!1.23e-25!3;CL:0000147!5.00e-21!14;CL:0000710!1.40e-14!20;CL:0000075!1.14e-10!27;CL:0002566!9.44e-10!1;CL:0001024!1.69e-09!1;CL:0002127!3.25e-09!1;CL:0000914!3.25e-09!1;CL:0000911!3.25e-09!1;CL:0000814!3.25e-09!1;CL:0002042!3.25e-09!1;CL:0002039!3.25e-09!1;CL:0002040!3.25e-09!1;CL:0002041!3.25e-09!1;CL:0002077!1.24e-08!33;CL:0000990!1.38e-08!8;CL:0000453!2.36e-07!5;CL:0000325!3.19e-07!39;CL:0000451!4.15e-07!10 | |ontology_enrichment_celltype=CL:0000148!1.33e-29!10;CL:0000541!1.33e-29!10;CL:0002567!1.23e-25!3;CL:0000147!5.00e-21!14;CL:0000710!1.40e-14!20;CL:0000075!1.14e-10!27;CL:0002566!9.44e-10!1;CL:0001024!1.69e-09!1;CL:0002127!3.25e-09!1;CL:0000914!3.25e-09!1;CL:0000911!3.25e-09!1;CL:0000814!3.25e-09!1;CL:0002042!3.25e-09!1;CL:0002039!3.25e-09!1;CL:0002040!3.25e-09!1;CL:0002041!3.25e-09!1;CL:0002077!1.24e-08!33;CL:0000990!1.38e-08!8;CL:0000453!2.36e-07!5;CL:0000325!3.19e-07!39;CL:0000451!4.15e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000148;4.26e-101;10!CL:0002567;1.28e-84;3!CL:0000147;2.07e-72;14!CL:0000710;7.12e-51;20!CL:0000075;7.95e-38;27!CL:0002566;1.33e-29;1!CL:0002077;1.71e-25;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,4.26e-101,10;CL:0000541,4.26e-101,10;CL:0002567,1.28e-84,3;CL:0000147,2.07e-72,14;CL:0000710,7.12e-51,20;CL:0000075,7.95e-38,27;CL:0002077,3.87e-30,34;CL:0002566,1.33e-29,1;CL:0000333,6.39e-24,41;CL:0000133,5.71e-17,59;CL:0000221,4.85e-14,72 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.74e-15;2!CL:0000133;1.90e-10;59!CL:0000221;8.55e-08;72 | |||
|ontology_enrichment_disease=DOID:4960!1.99e-09!1;DOID:0070004!1.99e-09!1 | |ontology_enrichment_disease=DOID:4960!1.99e-09!1;DOID:0070004!1.99e-09!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001301!1.32e-09!1;UBERON:0000997!4.50e-09!1;UBERON:0005056!4.50e-09!1 | |ontology_enrichment_uberon=UBERON:0001301!1.32e-09!1;UBERON:0000997!4.50e-09!1;UBERON:0005056!4.50e-09!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0001301;4.20e-29;1!UBERON:0006947;1.20e-10;3!UBERON:0004054;1.20e-10;3!UBERON:0005904;2.61e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,4.20e-29,1;UBERON:0006947,1.20e-10,3;UBERON:0004054,1.20e-10,3;UBERON:0005904,2.61e-08,4 | |||
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|short_description=p10@CAPN3 | |short_description=p10@CAPN3 | ||
}} | }} |
Latest revision as of 15:58, 17 September 2015
Short description: | p10@CAPN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_CAPN3_5end |
Coexpression cluster: | C88_Melanocyte_melanoma_Macrophage_Mesenchymal_migratory_Dendritic_Monocytederived |
Association with transcript: | -17bp_to_ENST00000397200, ENST00000466222, NM_173088, uc001zpq.1_5end |
EntrezGene: | CAPN3 |
HGNC: | 1480 |
UniProt: | P20807Q9BQC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 4.26e-101 | 10 |
melanoblast | 4.26e-101 | 10 |
light melanocyte | 1.28e-84 | 3 |
pigment cell | 2.07e-72 | 14 |
neurecto-epithelial cell | 7.12e-51 | 20 |
columnar/cuboidal epithelial cell | 7.95e-38 | 27 |
ecto-epithelial cell | 3.87e-30 | 34 |
dark melanocyte | 1.33e-29 | 1 |
migratory neural crest cell | 6.39e-24 | 41 |
neurectodermal cell | 5.71e-17 | 59 |
ectodermal cell | 4.85e-14 | 72 |
Ontology term | p-value | n |
---|---|---|
epididymis | 4.20e-29 | 1 |
male genital duct | 1.20e-10 | 3 |
internal male genitalia | 1.20e-10 | 3 |
duct of male reproductive system | 2.61e-08 | 4 |