FFCP PHASE1:Hg19::chr15:23932389..23932401,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4692 | |EntrezGene=4692 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7675 | |HGNC=7675 | ||
|TSSclassifier=strong | |||
|UniProt=Q99608 | |UniProt=Q99608 | ||
|association_with_transcript=48bp_to_ENST00000331837,NM_002487,uc001ywk.2_5end | |association_with_transcript=48bp_to_ENST00000331837,NM_002487,uc001ywk.2_5end | ||
|cluster_id=chr15:23932389..23932401,- | |||
|coexpression_cluster_id=C3475 | |coexpression_cluster_id=C3475 | ||
|description=CAGE_peak_3_at_NDN_5end | |description=CAGE_peak_3_at_NDN_5end | ||
|id=chr15:23932389..23932401,- | |id=chr15:23932389..23932401,- | ||
|ontology_enrichment_celltype=CL:0000055!2.75e-17!180;CL:0000136!7.12e-10!15;CL:0000222!3.23e-09!119;CL:0000057!7.74e-09!75;CL:0000393!1.40e-08!60;CL:0000211!1.40e-08!60;CL:0000183!2.40e-08!59;CL:0000680!1.41e-07!57;CL:0000056!1.41e-07!57;CL:0000355!1.41e-07!57;CL:0000187!3.24e-07!54 | |ontology_enrichment_celltype=CL:0000055!2.75e-17!180;CL:0000136!7.12e-10!15;CL:0000222!3.23e-09!119;CL:0000057!7.74e-09!75;CL:0000393!1.40e-08!60;CL:0000211!1.40e-08!60;CL:0000183!2.40e-08!59;CL:0000680!1.41e-07!57;CL:0000056!1.41e-07!57;CL:0000355!1.41e-07!57;CL:0000187!3.24e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0000136;8.93e-11;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,7.92e-11,15;CL:0000222,1.95e-08,121;CL:0000393,4.08e-08,61;CL:0000211,4.08e-08,61;CL:0000057,1.88e-07,76;CL:0000680,4.52e-07,58;CL:0000056,4.52e-07,58;CL:0000355,4.52e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.83e-14!365;UBERON:0003075!8.99e-13!86;UBERON:0007284!8.99e-13!86;UBERON:0000119!1.10e-12!312;UBERON:0000483!4.23e-12!309;UBERON:0000468!1.27e-11!659;UBERON:0002346!1.73e-11!90;UBERON:0003056!9.03e-10!61;UBERON:0000025!1.87e-09!194;UBERON:0005743!2.04e-09!86;UBERON:0000481!2.41e-09!347;UBERON:0000033!2.49e-09!123;UBERON:0000477!4.21e-09!286;UBERON:0000153!5.21e-09!129;UBERON:0007811!5.21e-09!129;UBERON:0004111!5.70e-09!241;UBERON:0007023!7.97e-09!115;UBERON:0000467!1.61e-08!625;UBERON:0001017!1.93e-08!82;UBERON:0002049!2.27e-08!79;UBERON:0007798!2.27e-08!79;UBERON:0000073!2.29e-08!94;UBERON:0001016!2.29e-08!94;UBERON:0000480!2.45e-08!626;UBERON:0002385!3.18e-08!63;UBERON:0001015!3.18e-08!63;UBERON:0000383!3.18e-08!63;UBERON:0004121!4.93e-08!169;UBERON:0001134!5.95e-08!61;UBERON:0002036!5.95e-08!61;UBERON:0003082!5.95e-08!61;UBERON:0000914!7.35e-08!83;UBERON:0002329!7.35e-08!83;UBERON:0003077!7.35e-08!83;UBERON:0003059!7.35e-08!83;UBERON:0007282!7.35e-08!83;UBERON:0009618!7.35e-08!83;UBERON:0007285!7.35e-08!83;UBERON:0004872!1.04e-07!84;UBERON:0001013!1.30e-07!14;UBERON:0000064!1.46e-07!219;UBERON:0000924!2.02e-07!173;UBERON:0006601!2.02e-07!173;UBERON:0001049!3.39e-07!57;UBERON:0005068!3.39e-07!57;UBERON:0006241!3.39e-07!57;UBERON:0007135!3.39e-07!57;UBERON:0002616!6.53e-07!59;UBERON:0005256!6.73e-07!143;UBERON:0000922!7.94e-07!612;UBERON:0002104!9.22e-07!21;UBERON:0004290!9.79e-07!70 | |ontology_enrichment_uberon=UBERON:0000475!2.83e-14!365;UBERON:0003075!8.99e-13!86;UBERON:0007284!8.99e-13!86;UBERON:0000119!1.10e-12!312;UBERON:0000483!4.23e-12!309;UBERON:0000468!1.27e-11!659;UBERON:0002346!1.73e-11!90;UBERON:0003056!9.03e-10!61;UBERON:0000025!1.87e-09!194;UBERON:0005743!2.04e-09!86;UBERON:0000481!2.41e-09!347;UBERON:0000033!2.49e-09!123;UBERON:0000477!4.21e-09!286;UBERON:0000153!5.21e-09!129;UBERON:0007811!5.21e-09!129;UBERON:0004111!5.70e-09!241;UBERON:0007023!7.97e-09!115;UBERON:0000467!1.61e-08!625;UBERON:0001017!1.93e-08!82;UBERON:0002049!2.27e-08!79;UBERON:0007798!2.27e-08!79;UBERON:0000073!2.29e-08!94;UBERON:0001016!2.29e-08!94;UBERON:0000480!2.45e-08!626;UBERON:0002385!3.18e-08!63;UBERON:0001015!3.18e-08!63;UBERON:0000383!3.18e-08!63;UBERON:0004121!4.93e-08!169;UBERON:0001134!5.95e-08!61;UBERON:0002036!5.95e-08!61;UBERON:0003082!5.95e-08!61;UBERON:0000914!7.35e-08!83;UBERON:0002329!7.35e-08!83;UBERON:0003077!7.35e-08!83;UBERON:0003059!7.35e-08!83;UBERON:0007282!7.35e-08!83;UBERON:0009618!7.35e-08!83;UBERON:0007285!7.35e-08!83;UBERON:0004872!1.04e-07!84;UBERON:0001013!1.30e-07!14;UBERON:0000064!1.46e-07!219;UBERON:0000924!2.02e-07!173;UBERON:0006601!2.02e-07!173;UBERON:0001049!3.39e-07!57;UBERON:0005068!3.39e-07!57;UBERON:0006241!3.39e-07!57;UBERON:0007135!3.39e-07!57;UBERON:0002616!6.53e-07!59;UBERON:0005256!6.73e-07!143;UBERON:0000922!7.94e-07!612;UBERON:0002104!9.22e-07!21;UBERON:0004290!9.79e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;4.05e-08;14!UBERON:0002104;5.79e-07;21!UBERON:0001032;6.41e-07;24!UBERON:0004456;6.41e-07;24 | |||
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| ||
|short_description=p3@NDN | |short_description=p3@NDN | ||
}} | }} |
Latest revision as of 23:59, 16 September 2015
Short description: | p3@NDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NDN_5end |
Coexpression cluster: | C3475_skeletal_Mesenchymal_Alveolar_brain_Hepatic_Adipocyte_mature |
Association with transcript: | 48bp_to_ENST00000331837, NM_002487, uc001ywk.2_5end |
EntrezGene: | NDN |
HGNC: | 7675 |
UniProt: | Q99608 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 7.92e-11 | 15 |
mesodermal cell | 1.95e-08 | 121 |
electrically responsive cell | 4.08e-08 | 61 |
electrically active cell | 4.08e-08 | 61 |
fibroblast | 1.88e-07 | 76 |
muscle precursor cell | 4.52e-07 | 58 |
myoblast | 4.52e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.52e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 4.33e-12 | 132 |
neural plate | 4.43e-12 | 82 |
presumptive neural plate | 4.43e-12 | 82 |
cell layer | 5.29e-11 | 309 |
neurectoderm | 1.57e-10 | 86 |
epithelium | 1.99e-10 | 306 |
adipose tissue | 2.62e-08 | 14 |
pre-chordal neural plate | 3.03e-08 | 61 |
tube | 1.22e-07 | 192 |
central nervous system | 1.33e-07 | 81 |
muscle tissue | 1.37e-07 | 64 |
musculature | 1.37e-07 | 64 |
musculature of body | 1.37e-07 | 64 |
vasculature | 1.80e-07 | 78 |
vascular system | 1.80e-07 | 78 |
epithelial vesicle | 2.61e-07 | 78 |
skeletal muscle tissue | 2.69e-07 | 62 |
striated muscle tissue | 2.69e-07 | 62 |
myotome | 2.69e-07 | 62 |
splanchnic layer of lateral plate mesoderm | 2.79e-07 | 83 |
adult organism | 5.39e-07 | 114 |
ecto-epithelium | 5.62e-07 | 104 |
sense organ | 6.23e-07 | 24 |
sensory system | 6.23e-07 | 24 |
entire sense organ system | 6.23e-07 | 24 |
eye | 7.15e-07 | 21 |
visual system | 7.15e-07 | 21 |
face | 9.16e-07 | 22 |