FFCP PHASE1:Hg19::chr18:19749517..19749531,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:19749517..19749531,+
|short_description=p3@GATA6
|description=CAGE_peak_3_at_GATA6_5end
|association_with_transcript=101bp_to_NM_005257,uc002ktt.1_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2627 | |EntrezGene=2627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4174 | |HGNC=4174 | ||
|TSSclassifier=strong | |||
|UniProt=Q05CA6,Q92908 | |UniProt=Q05CA6,Q92908 | ||
|association_with_transcript=101bp_to_NM_005257,uc002ktt.1_5end | |||
|cluster_id=chr18:19749517..19749531,+ | |||
|coexpression_cluster_id=C3708 | |||
|description=CAGE_peak_3_at_GATA6_5end | |||
|id=chr18:19749517..19749531,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.88e-09!254;CL:0000220!2.89e-08!246;CL:0000222!4.51e-08!119;CL:0002321!5.83e-08!248;CL:0000192!1.74e-07!42;CL:0000514!1.74e-07!42;CL:0002494!2.77e-07!16;CL:0000359!7.40e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002494;4.91e-08;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0002494,5.33e-08,16;CL:0000222,1.52e-07,121;CL:0000192,1.92e-07,43;CL:0000514,1.92e-07,43;CL:0000066,4.52e-07,253;CL:0000359,5.78e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.73e-09!143;DOID:305!1.34e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,7.07e-09,143;DOID:305,6.56e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0003914!3.92e-24!118;UBERON:0001048!4.08e-18!168;UBERON:0000490!1.44e-17!138;UBERON:0004872!3.06e-17!84;UBERON:0004921!6.34e-16!129;UBERON:0004185!6.34e-16!129;UBERON:0003104!1.95e-15!238;UBERON:0009142!1.95e-15!238;UBERON:0002100!1.04e-14!216;UBERON:0001007!1.60e-13!155;UBERON:0001555!1.60e-13!155;UBERON:0007026!1.60e-13!155;UBERON:0007100!2.02e-13!27;UBERON:0001009!2.17e-13!113;UBERON:0004119!2.31e-13!169;UBERON:0000925!2.31e-13!169;UBERON:0006595!2.31e-13!169;UBERON:0000466!1.18e-12!126;UBERON:0001981!2.16e-12!60;UBERON:0007500!2.16e-12!60;UBERON:0004537!2.16e-12!60;UBERON:0006965!2.16e-12!60;UBERON:0000481!2.20e-12!347;UBERON:0004535!4.59e-12!110;UBERON:0000948!1.51e-11!24;UBERON:0005498!1.51e-11!24;UBERON:0004140!1.51e-11!24;UBERON:0009881!1.51e-11!24;UBERON:0004141!1.51e-11!24;UBERON:0003084!1.51e-11!24;UBERON:0007005!1.51e-11!24;UBERON:0004139!1.51e-11!24;UBERON:0004291!1.51e-11!24;UBERON:0009569!5.89e-11!113;UBERON:0001637!6.44e-11!42;UBERON:0003509!6.44e-11!42;UBERON:0004572!6.44e-11!42;UBERON:0002049!8.09e-11!79;UBERON:0007798!8.09e-11!79;UBERON:0005911!1.35e-10!82;UBERON:0000077!2.36e-10!130;UBERON:0003929!8.40e-10!54;UBERON:0000055!9.92e-10!69;UBERON:0000926!1.28e-09!448;UBERON:0004120!1.28e-09!448;UBERON:0006603!1.28e-09!448;UBERON:0000119!1.78e-09!312;UBERON:0000483!3.08e-09!309;UBERON:0000477!3.56e-09!286;UBERON:0007499!6.47e-09!25;UBERON:0004458!7.07e-09!49;UBERON:0009856!8.71e-09!26;UBERON:0003103!1.03e-08!69;UBERON:0005256!1.05e-08!143;UBERON:0001041!1.10e-08!98;UBERON:0005409!1.59e-08!35;UBERON:0000025!1.65e-08!194;UBERON:0004111!1.68e-08!241;UBERON:0009497!2.33e-08!25;UBERON:0000015!2.33e-08!25;UBERON:0002423!2.33e-08!25;UBERON:0006235!2.33e-08!25;UBERON:0004161!2.33e-08!25;UBERON:0002323!2.38e-08!46;UBERON:0008835!3.71e-08!22;UBERON:0003894!3.71e-08!22;UBERON:0009854!5.04e-08!23;UBERON:0005177!5.44e-08!107;UBERON:0004573!6.30e-08!33;UBERON:0004571!6.30e-08!33;UBERON:0005156!1.75e-07!59;UBERON:0000990!1.75e-07!59;UBERON:0000160!2.19e-07!27;UBERON:0002107!2.52e-07!19;UBERON:0006925!2.52e-07!19;UBERON:0008836!2.52e-07!19;UBERON:0000464!2.75e-07!104;UBERON:0000949!4.26e-07!45;UBERON:0003886!5.33e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;7.26e-14;25!UBERON:0000948;9.58e-12;22!UBERON:0002423;8.93e-09;25!UBERON:0001637;4.92e-08;42!UBERON:0003509;4.92e-08;42!UBERON:0004572;4.92e-08;42!UBERON:0005409;7.28e-08;22!UBERON:0002107;2.02e-07;19!UBERON:0006925;2.02e-07;19 | |||
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| ||
|short_description=p3@GATA6 | |||
}} | }} |
Latest revision as of 22:43, 18 September 2015
Short description: | p3@GATA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GATA6_5end |
Coexpression cluster: | C3708_stomach_colon_hepatoblastoma_ovary_heart_Hepatic_mesothelioma |
Association with transcript: | 101bp_to_NM_005257, uc002ktt.1_5end |
EntrezGene: | GATA6 |
HGNC: | 4174 |
UniProt: | Q05CA6Q92908 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiocyte | 5.33e-08 | 16 |
mesodermal cell | 1.52e-07 | 121 |
smooth muscle cell | 1.92e-07 | 43 |
smooth muscle myoblast | 1.92e-07 | 43 |
epithelial cell | 4.52e-07 | 253 |
vascular associated smooth muscle cell | 5.78e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 7.07e-09 | 143 |
carcinoma | 6.56e-08 | 106 |