FFCP PHASE1:Hg19::chr13:48807357..48807368,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9445 | |EntrezGene=9445 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6174 | |HGNC=6174 | ||
|TSSclassifier=strong | |||
|UniProt=Q5W0A2 | |UniProt=Q5W0A2 | ||
|association_with_transcript=18bp_to_ENST00000378549_5end | |association_with_transcript=18bp_to_ENST00000378549_5end | ||
|cluster_id=chr13:48807357..48807368,+ | |||
|coexpression_cluster_id=C3376 | |coexpression_cluster_id=C3376 | ||
|description=CAGE_peak_4_at_ITM2B_5end | |description=CAGE_peak_4_at_ITM2B_5end | ||
|id=chr13:48807357..48807368,+ | |id=chr13:48807357..48807368,+ | ||
|ontology_enrichment_celltype=CL:0000766!1.14e-24!76;CL:0000557!4.36e-21!71;CL:0002057!1.99e-20!42;CL:0000839!9.53e-20!70;CL:0002009!3.53e-19!65;CL:0002194!2.40e-18!63;CL:0000576!2.40e-18!63;CL:0000040!2.40e-18!63;CL:0000559!2.40e-18!63;CL:0000860!7.72e-17!45;CL:0000763!2.48e-09!112;CL:0000049!2.48e-09!112 | |ontology_enrichment_celltype=CL:0000766!1.14e-24!76;CL:0000557!4.36e-21!71;CL:0002057!1.99e-20!42;CL:0000839!9.53e-20!70;CL:0002009!3.53e-19!65;CL:0002194!2.40e-18!63;CL:0000576!2.40e-18!63;CL:0000040!2.40e-18!63;CL:0000559!2.40e-18!63;CL:0000860!7.72e-17!45;CL:0000763!2.48e-09!112;CL:0000049!2.48e-09!112 | ||
|ontology_enrichment_celltype_v019=CL:0000473;3.29e-16;39!CL:0000234;3.29e-16;39!CL:0000860;3.61e-16;33!CL:0002057;3.61e-16;33!CL:0000576;1.66e-13;48!CL:0000766;7.68e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.64e-27,72;CL:0000557,9.45e-24,67;CL:0000473,1.34e-23,48;CL:0000234,1.34e-23,48;CL:0000839,2.59e-22,66;CL:0002009,7.80e-22,61;CL:0002194,5.62e-21,59;CL:0000576,5.62e-21,59;CL:0000040,5.62e-21,59;CL:0000559,5.62e-21,59;CL:0000860,1.98e-20,42;CL:0002057,1.98e-20,42;CL:0000763,1.90e-10,108;CL:0000049,1.90e-10,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.96e-15;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.35e-29!115;UBERON:0002193!1.39e-18!112;UBERON:0002390!3.33e-18!102;UBERON:0003061!3.33e-18!102;UBERON:0002371!7.53e-17!80;UBERON:0003081!3.06e-16!216;UBERON:0001474!1.03e-14!86;UBERON:0000467!2.23e-14!625;UBERON:0000480!4.02e-14!626;UBERON:0000468!6.70e-14!659;UBERON:0002405!2.10e-13!115;UBERON:0004765!5.48e-13!101;UBERON:0001434!5.48e-13!101;UBERON:0000062!3.03e-12!511;UBERON:0002050!1.78e-10!605;UBERON:0005423!1.78e-10!605;UBERON:0000922!2.51e-10!612;UBERON:0000923!3.09e-10!604;UBERON:0005291!3.09e-10!604;UBERON:0006598!3.09e-10!604;UBERON:0002532!3.09e-10!604;UBERON:0002204!1.01e-08!167;UBERON:0001049!1.14e-07!57;UBERON:0005068!1.14e-07!57;UBERON:0006241!1.14e-07!57;UBERON:0007135!1.14e-07!57;UBERON:0002616!8.68e-07!59 | |ontology_enrichment_uberon=UBERON:0007023!4.35e-29!115;UBERON:0002193!1.39e-18!112;UBERON:0002390!3.33e-18!102;UBERON:0003061!3.33e-18!102;UBERON:0002371!7.53e-17!80;UBERON:0003081!3.06e-16!216;UBERON:0001474!1.03e-14!86;UBERON:0000467!2.23e-14!625;UBERON:0000480!4.02e-14!626;UBERON:0000468!6.70e-14!659;UBERON:0002405!2.10e-13!115;UBERON:0004765!5.48e-13!101;UBERON:0001434!5.48e-13!101;UBERON:0000062!3.03e-12!511;UBERON:0002050!1.78e-10!605;UBERON:0005423!1.78e-10!605;UBERON:0000922!2.51e-10!612;UBERON:0000923!3.09e-10!604;UBERON:0005291!3.09e-10!604;UBERON:0006598!3.09e-10!604;UBERON:0002532!3.09e-10!604;UBERON:0002204!1.01e-08!167;UBERON:0001049!1.14e-07!57;UBERON:0005068!1.14e-07!57;UBERON:0006241!1.14e-07!57;UBERON:0007135!1.14e-07!57;UBERON:0002616!8.68e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;2.98e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.71e-29,114;UBERON:0002193,2.50e-20,108;UBERON:0002390,4.85e-20,98;UBERON:0003061,4.85e-20,98;UBERON:0002371,6.46e-19,76;UBERON:0003081,6.36e-18,203;UBERON:0002405,2.35e-17,93;UBERON:0001474,1.71e-16,82;UBERON:0004765,1.32e-15,90;UBERON:0001434,1.07e-13,100;UBERON:0000926,4.63e-13,315;UBERON:0004120,4.63e-13,315;UBERON:0006603,4.63e-13,315;UBERON:0005423,1.14e-12,581;UBERON:0002050,2.12e-12,564;UBERON:0000922,7.43e-12,592;UBERON:0000923,1.30e-11,560;UBERON:0010316,1.30e-11,560;UBERON:0005291,1.30e-11,560;UBERON:0006598,1.30e-11,560;UBERON:0010317,1.30e-11,560;UBERON:0002532,1.30e-11,560;UBERON:0002204,4.93e-09,167;UBERON:0001049,1.70e-07,56;UBERON:0005068,1.70e-07,56;UBERON:0006241,1.70e-07,56;UBERON:0007135,1.70e-07,56;UBERON:0000073,6.46e-07,53;UBERON:0002616,6.46e-07,53 | |||
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| ||
|short_description=p4@ITM2B | |short_description=p4@ITM2B | ||
}} | }} |
Latest revision as of 15:01, 17 September 2015
Short description: | p4@ITM2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ITM2B_5end |
Coexpression cluster: | C3376_Neutrophils_Eosinophils_chorionic_epididymis_clear_kidney_Whole |
Association with transcript: | 18bp_to_ENST00000378549_5end |
EntrezGene: | ITM2B |
HGNC: | 6174 |
UniProt: | Q5W0A2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.64e-27 | 72 |
granulocyte monocyte progenitor cell | 9.45e-24 | 67 |
defensive cell | 1.34e-23 | 48 |
phagocyte | 1.34e-23 | 48 |
myeloid lineage restricted progenitor cell | 2.59e-22 | 66 |
macrophage dendritic cell progenitor | 7.80e-22 | 61 |
monopoietic cell | 5.62e-21 | 59 |
monocyte | 5.62e-21 | 59 |
monoblast | 5.62e-21 | 59 |
promonocyte | 5.62e-21 | 59 |
classical monocyte | 1.98e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.98e-20 | 42 |
myeloid cell | 1.90e-10 | 108 |
common myeloid progenitor | 1.90e-10 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.71e-29 | 114 |
hemolymphoid system | 2.50e-20 | 108 |
hematopoietic system | 4.85e-20 | 98 |
blood island | 4.85e-20 | 98 |
bone marrow | 6.46e-19 | 76 |
lateral plate mesoderm | 6.36e-18 | 203 |
immune system | 2.35e-17 | 93 |
bone element | 1.71e-16 | 82 |
skeletal element | 1.32e-15 | 90 |
skeletal system | 1.07e-13 | 100 |
mesoderm | 4.63e-13 | 315 |
mesoderm-derived structure | 4.63e-13 | 315 |
presumptive mesoderm | 4.63e-13 | 315 |
developing anatomical structure | 1.14e-12 | 581 |
embryonic structure | 2.12e-12 | 564 |
embryo | 7.43e-12 | 592 |
germ layer | 1.30e-11 | 560 |
germ layer / neural crest | 1.30e-11 | 560 |
embryonic tissue | 1.30e-11 | 560 |
presumptive structure | 1.30e-11 | 560 |
germ layer / neural crest derived structure | 1.30e-11 | 560 |
epiblast (generic) | 1.30e-11 | 560 |
musculoskeletal system | 4.93e-09 | 167 |
neural tube | 1.70e-07 | 56 |
neural rod | 1.70e-07 | 56 |
future spinal cord | 1.70e-07 | 56 |
neural keel | 1.70e-07 | 56 |
regional part of nervous system | 6.46e-07 | 53 |
regional part of brain | 6.46e-07 | 53 |