FFCP PHASE1:Hg19::chr18:13376396..13376411,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr18:13376396..13376411,+
|short_description=p@chr18:13376396..13376411,+
|description=CAGE_peak_at_chr18:13376396..13376411,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr18:13376396..13376411,+ | |||
|description=CAGE_peak_at_chr18:13376396..13376411,+ | |||
|id=chr18:13376396..13376411,+ | |||
|ontology_enrichment_celltype=CL:0000084!3.49e-27!25;CL:0000827!3.49e-27!25;CL:0000791!1.56e-21!18;CL:0000789!1.56e-21!18;CL:0002420!1.56e-21!18;CL:0002419!1.56e-21!18;CL:0000790!1.56e-21!18;CL:0000624!2.27e-18!6;CL:0000838!5.66e-16!52;CL:0000542!1.40e-15!53;CL:0000051!1.40e-15!53;CL:0000453!3.28e-14!5;CL:0000738!5.50e-13!140;CL:0000988!1.05e-12!182;CL:0000037!6.95e-11!172;CL:0000566!6.95e-11!172;CL:0002032!6.81e-10!165;CL:0000837!6.81e-10!165;CL:0000898!7.92e-10!3;CL:0000623!2.22e-09!3;CL:0000825!2.22e-09!3;CL:0002031!2.43e-09!124;CL:0000625!5.28e-09!11;CL:0002087!6.22e-09!119;CL:0000080!1.01e-08!6;CL:0000990!9.49e-08!8;CL:0001014!2.82e-07!2;CL:0001016!2.82e-07!2;CL:0000815!3.00e-07!2;CL:0000792!3.00e-07!2;CL:0002677!3.00e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000624;3.22e-17;6!CL:0000084;1.85e-15;25!CL:0000791;4.63e-10;18!CL:0000789;4.63e-10;18!CL:0002419;4.63e-10;18!CL:0000815;4.96e-07;2!CL:0000792;4.96e-07;2!CL:0002677;4.96e-07;2!CL:0001014;6.42e-07;2!CL:0001016;6.42e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,3.14e-17,6;CL:0000084,1.63e-15,25;CL:0000827,1.63e-15,25;CL:0000791,4.85e-10,18;CL:0000789,4.85e-10,18;CL:0002420,4.85e-10,18;CL:0002419,4.85e-10,18;CL:0000790,4.85e-10,18;CL:0000838,2.91e-07,52;CL:0000542,4.06e-07,53;CL:0000051,4.06e-07,53;CL:0000815,5.11e-07,2;CL:0000792,5.11e-07,2;CL:0002677,5.11e-07,2;CL:0001014,6.42e-07,2;CL:0001016,6.42e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;4.63e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;2.91e-12;1!DOID:0060061;2.91e-12;1!DOID:9119;2.91e-12;1!DOID:8691;2.91e-12;1 | |||
|ontology_enrichment_disease_v019_2=DOID:9119,1.96e-12,1;DOID:0060060,2.20e-12,1;DOID:0060061,2.20e-12,1;DOID:8691,2.20e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!7.68e-07!15;UBERON:0000179!7.68e-07!15;UBERON:0000463!7.68e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;8.78e-11;10!UBERON:0000178;2.35e-07;15!UBERON:0000179;2.35e-07;15!UBERON:0000463;2.35e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,8.36e-11,10;UBERON:0000358,8.36e-11,10;UBERON:0000307,8.36e-11,10;UBERON:0000091,8.36e-11,10;UBERON:0000087,8.36e-11,10;UBERON:0007010,8.36e-11,10;UBERON:0007806,8.36e-11,10;UBERON:0008780,8.36e-11,10;UBERON:0005728,8.36e-11,10;UBERON:0000178,2.28e-07,15;UBERON:0000179,2.28e-07,15;UBERON:0000463,2.28e-07,15 | |||
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| ||
|short_description=p@chr18:13376396..13376411,+ | |||
}} | }} |
Latest revision as of 23:45, 25 July 2015
Short description: | p@chr18:13376396..13376411, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:13376396..13376411, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 3.14e-17 | 6 |
T cell | 1.63e-15 | 25 |
pro-T cell | 1.63e-15 | 25 |
mature alpha-beta T cell | 4.85e-10 | 18 |
alpha-beta T cell | 4.85e-10 | 18 |
immature T cell | 4.85e-10 | 18 |
mature T cell | 4.85e-10 | 18 |
immature alpha-beta T cell | 4.85e-10 | 18 |
lymphoid lineage restricted progenitor cell | 2.91e-07 | 52 |
lymphocyte | 4.06e-07 | 53 |
common lymphoid progenitor | 4.06e-07 | 53 |
regulatory T cell | 5.11e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.11e-07 | 2 |
naive regulatory T cell | 5.11e-07 | 2 |
CD1a-positive Langerhans cell | 6.42e-07 | 2 |
immature CD1a-positive Langerhans cell | 6.42e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 8.36e-11 | 10 |
blastocyst | 8.36e-11 | 10 |
blastula | 8.36e-11 | 10 |
bilaminar disc | 8.36e-11 | 10 |
inner cell mass | 8.36e-11 | 10 |
cleaving embryo | 8.36e-11 | 10 |
connecting stalk | 8.36e-11 | 10 |
inner cell mass derived epiblast | 8.36e-11 | 10 |
extraembryonic mesoderm | 8.36e-11 | 10 |
blood | 2.28e-07 | 15 |
haemolymphatic fluid | 2.28e-07 | 15 |
organism substance | 2.28e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
acute myeloid leukemia | 1.96e-12 | 1 |
non-Hodgkin lymphoma | 2.20e-12 | 1 |
cutaneous T cell lymphoma | 2.20e-12 | 1 |
mycosis fungoides | 2.20e-12 | 1 |