FFCP PHASE1:Hg19::chr13:20767067..20767083,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2706 | |EntrezGene=2706 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4284 | |HGNC=4284 | ||
|TSSclassifier=strong | |||
|UniProt=P29033 | |UniProt=P29033 | ||
|association_with_transcript=-30bp_to_,30bp_to_ENST00000382848,NM_004004,uc001umy.2_5end | |association_with_transcript=-30bp_to_,30bp_to_ENST00000382848,NM_004004,uc001umy.2_5end | ||
|cluster_id=chr13:20767067..20767083,- | |||
|coexpression_cluster_id=C1702 | |coexpression_cluster_id=C1702 | ||
|description=CAGE_peak_1_at_GJB2_5end | |description=CAGE_peak_1_at_GJB2_5end | ||
|id=chr13:20767067..20767083,- | |id=chr13:20767067..20767083,- | ||
|ontology_enrichment_celltype=CL:0002076!2.54e-15!43;CL:0000223!2.89e-13!59;CL:0002057!1.28e-08!42;CL:0002368!1.60e-08!13;CL:0000860!4.18e-07!45;CL:0002009!8.94e-07!65 | |ontology_enrichment_celltype=CL:0002076!2.54e-15!43;CL:0000223!2.89e-13!59;CL:0002057!1.28e-08!42;CL:0002368!1.60e-08!13;CL:0000860!4.18e-07!45;CL:0002009!8.94e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.29e-13;42!CL:0000860;1.10e-12;33!CL:0002057;1.10e-12;33!CL:0000473;5.60e-12;39!CL:0000234;5.60e-12;39!CL:0002368;1.62e-09;13!CL:0002251;2.26e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.20e-18,42;CL:0000223,5.95e-14,58;CL:0000473,1.21e-12,48;CL:0000234,1.21e-12,48;CL:0000860,8.22e-11,42;CL:0002057,8.22e-11,42;CL:0002194,1.43e-10,59;CL:0000576,1.43e-10,59;CL:0000040,1.43e-10,59;CL:0000559,1.43e-10,59;CL:0002009,2.33e-10,61;CL:0002368,1.49e-09,13;CL:0000557,1.21e-08,67;CL:0000839,1.83e-08,66;CL:0002251,2.08e-08,20;CL:0000766,1.43e-07,72 | |||
|ontology_enrichment_development_v019=CL:0002057;1.72e-08;42!CL:0000223;4.11e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000922!4.42e-16!612;UBERON:0000062!1.37e-15!511;UBERON:0002050!1.48e-15!605;UBERON:0005423!1.48e-15!605;UBERON:0000923!4.30e-15!604;UBERON:0005291!4.30e-15!604;UBERON:0006598!4.30e-15!604;UBERON:0002532!4.30e-15!604;UBERON:0000467!6.03e-12!625;UBERON:0000480!9.56e-12!626;UBERON:0000468!1.23e-09!659;UBERON:0004119!1.05e-08!169;UBERON:0000925!1.05e-08!169;UBERON:0006595!1.05e-08!169;UBERON:0007023!1.84e-07!115 | |ontology_enrichment_uberon=UBERON:0000922!4.42e-16!612;UBERON:0000062!1.37e-15!511;UBERON:0002050!1.48e-15!605;UBERON:0005423!1.48e-15!605;UBERON:0000923!4.30e-15!604;UBERON:0005291!4.30e-15!604;UBERON:0006598!4.30e-15!604;UBERON:0002532!4.30e-15!604;UBERON:0000467!6.03e-12!625;UBERON:0000480!9.56e-12!626;UBERON:0000468!1.23e-09!659;UBERON:0004119!1.05e-08!169;UBERON:0000925!1.05e-08!169;UBERON:0006595!1.05e-08!169;UBERON:0007023!1.84e-07!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,2.04e-13,592;UBERON:0005423,1.33e-12,581;UBERON:0002050,2.19e-10,564;UBERON:0000923,5.79e-09,560;UBERON:0010316,5.79e-09,560;UBERON:0005291,5.79e-09,560;UBERON:0006598,5.79e-09,560;UBERON:0010317,5.79e-09,560;UBERON:0002532,5.79e-09,560;UBERON:0004119,1.59e-07,160;UBERON:0000925,1.59e-07,160;UBERON:0006595,1.59e-07,160;UBERON:0011216,2.50e-07,223;UBERON:0002371,2.83e-07,76;UBERON:0004765,4.72e-07,90;UBERON:0000161,7.63e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,5.06599756336621,2.52687949370732,0.522371256399677,0.245733936501509,0,2.83973783769224,9.49561121622433,0.247532705920093,0.994192127183747,0,0,0.730310090387373,0,1.47745269692145,0,95.6036900508168,2.57612388417951,1.77936752594749,0,0.152826811495903,0,0.0787107813136792,0,0,0.928896739896456,602.220902033697,1737.35573951295,703.641881347397,0,0,0,4.43196326825502,10.2277668209772,8.02940221648652,0,1.6194683300949,0,2.4717700592526,3.40088349319928,1.94067248950253,46.4858073811369,48.9289786745973,103.75163424986,20.4261598548727,23.8229457072064,24.1211874486357,266.14366552867,231.08351672301,354.817394877175,31.0599860245298,31.3842072566523,26.51737116452,126.718731441554,106.548436989263,211.620588639483,0.659702600373432,1.39624560335142,1.70489900213078,250.740782175097,376.176403970226,334.455547710624,4.52247597462138,9.38669253156363,4.56096573880745,257.294788619182,272.15717299481,247.473586978772,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80254281490768,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0.339928028092699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3858578411533,0.486634870302636,0,0.221729397462564,0.263504357079378,8.64461898284903,1532.95457313502,1342.61046732242,6.49094787309367,6.79105975467142,5.7171923023112,0.715471872916026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46437234528902,0,0,0,0,0,0,0,0.183201743930407,1.31780417436063,0,1011.73820097068,0,0,0,0,1.41867352879343,4.48542080113846,0,0,0,0.269421344139376,0,35.1149232136241,14.98057403648,0,0.312160076830321,7.41613368007784,0,1.64408298101271,0.971237666208789,0.140450806702248,0,0.122834317311768,0,0,0,1.82032272387605,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,420.149094777007,789.872765231057,317.779491691016,0,0.132529768321485,0.232387885739037,0.518305275076852,0.504641701751257,0,1.56449532329816,4.5026865673502,0,0,0,0.236613600079688,0,0,0,0,0.237270619111097,0.269662616320329,0.392442930250692,0,0,0,0.4115740113314,0,41.8291614912042,19.6565443335525,31.9026549607958,0,10.822982591794,0.514703430895577,595.72454919802,165.230577288701,294.04724430402,730.800597636274,0,1.03993478527958,0,0,0,0,0,0,0,0,1.47730203652438,18.0183284157213,15.1603785534503,465.857154914282,54.4262095364305,393.567669944865,19.3446409038152,21.2162775115192,37.1881198790255,0.492663237895943,0,1.03664057770386,0.432359860250884,0.6312121671319,1.0159663086747,0,0,29.0823158238599,0.205654985406647,0,1.14330573052231,0.224262168690721,5.66748089483264,0.2933531432838,0.646358578788889,0,0.845302752556,0,0,0,0,0,0,0,0,0.65147236858747,0,0,3.61727252471503,0.871533458600294,10.6971100564801,7.29742683847143,4.52031382288914,2.10833939483032,0,0,0,0,0,0,0,0,0,0.256686072559497,1.27047312111232,0,0,0.167516265334349,0,0,2.99161459204025,0.414415513436035,0.12269149171914,1.50051156317903,0,0,0,0,0,0.601892199455438,25.0148254461583,4.1389228517002,0,0.368738337083406,0,318.960085506804,196.27803841981,0,0.862856803274467,0.640365346820666,0.303127571446259,0,0.604780586659361,0,0,0,0,0,0.160853921143607,0,18.6593729501213,9.23320971628261,9.52675009760186,3.11552657510173,6.04293967991788,3.98836183652353,754.305341280958,185.635273694767,0,0.182091168006717,1.70461739447251,3.60959690325929,1.30926073077505,2.35304930753057,5.84556898613043,5.69978796021529,0,0,0.215915916102139,0,4.87703587578935,3.01013864312912,3.3133915495855,2.49322802678617,1.34324852833307,0,0,0,0,0.325378394664303,8.96456801335184,2.01452822600355,0.577566499444116,1216.86867501389,528.498980027692,0,7.0569624353249,2.15668063960502,2.30255512089194,0.551346289938122,0.214840489736547,1.16013355131383,6.64767693845587,14.6902858817117,772.376409481851,786.249565590649,206.860206953721,729.145284406804,0,0.31481234683064,0,0,0.532306030317022,0,0,0,10.7925927114304,0,0,0.511795582622668,0,0,0,0,0,0.824686816419805,0.202182481573316,0,0,0.975267478179181,0.487426979262569,0,0,0,0,0,0,0,0,0,0.202910376962704,2.78841148289775,0,0.717056761020258,0,0.35667105148125,0,0.633322905892992,0,0,0,705.885418954357,872.063260472059,1057.33146300344,8.5670858706869,3029.46630748744,2943.19667991342,5553.07581273979,1771.39713899586,0,0,0,0,0,0,0,0,0.213648142254946,0,22.2986596542739,0,0,0,0.637705090915289,0,0,0,0,0,0,0.156679895773023,0,0.169291777801603,0,0,20.4406194091357,0,0,0,0,3.12620952643264,0,0,0,0,0,14.7841026922494,0.73254089635947,0,0,102.857285143922,0.23874448473769,0.593929361665277,0,2.98244294329889,0.984685914873589,25.4896934502455,0,0,2.19172787076177,6.63081397274754,0,0,0,0,8.17801995440674,5.19161406559267,0,1.97286811273867,0,0,0,3.15411533750294,1.99613798001194,0.260427761085233,0,0.724999575434793,14.4517679322585,2.79679015322043,0.945550727071745,0,0.291604613383254,0,0.885741385813839,1.08536794762867,3.05163472634166,4.20201187738654,3.84211904639612,31.3721117930181,0,395.126891285562,232.389780681467,0.341826167541004,0.69169171316418,0.359030577639089,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| ||
|short_description=p1@GJB2 | |short_description=p1@GJB2 | ||
}} | }} |
Latest revision as of 18:45, 16 September 2015
Short description: | p1@GJB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GJB2_5end |
Coexpression cluster: | C1702_Urothelial_Bronchial_Corneal_Sebocyte_Tracheal_Esophageal_Gingival |
Association with transcript: | -30bp_to_, 30bp_to_ENST00000382848, NM_004004, uc001umy.2_5end |
EntrezGene: | GJB2 |
HGNC: | 4284 |
UniProt: | P29033 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.20e-18 | 42 |
endodermal cell | 5.95e-14 | 58 |
defensive cell | 1.21e-12 | 48 |
phagocyte | 1.21e-12 | 48 |
classical monocyte | 8.22e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.22e-11 | 42 |
monopoietic cell | 1.43e-10 | 59 |
monocyte | 1.43e-10 | 59 |
monoblast | 1.43e-10 | 59 |
promonocyte | 1.43e-10 | 59 |
macrophage dendritic cell progenitor | 2.33e-10 | 61 |
respiratory epithelial cell | 1.49e-09 | 13 |
granulocyte monocyte progenitor cell | 1.21e-08 | 67 |
myeloid lineage restricted progenitor cell | 1.83e-08 | 66 |
epithelial cell of alimentary canal | 2.08e-08 | 20 |
myeloid leukocyte | 1.43e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
embryo | 2.04e-13 | 592 |
developing anatomical structure | 1.33e-12 | 581 |
embryonic structure | 2.19e-10 | 564 |
germ layer | 5.79e-09 | 560 |
germ layer / neural crest | 5.79e-09 | 560 |
embryonic tissue | 5.79e-09 | 560 |
presumptive structure | 5.79e-09 | 560 |
germ layer / neural crest derived structure | 5.79e-09 | 560 |
epiblast (generic) | 5.79e-09 | 560 |
endoderm-derived structure | 1.59e-07 | 160 |
endoderm | 1.59e-07 | 160 |
presumptive endoderm | 1.59e-07 | 160 |
organ system subdivision | 2.50e-07 | 223 |
bone marrow | 2.83e-07 | 76 |
skeletal element | 4.72e-07 | 90 |
orifice | 7.63e-07 | 36 |