FFCP PHASE1:Hg19::chr12:79845142..79845155,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6857 | |EntrezGene=6857 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11509 | |HGNC=11509 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=298bp_to_U19921_5end | |association_with_transcript=298bp_to_U19921_5end | ||
|cluster_id=chr12:79845142..79845155,+ | |||
|coexpression_cluster_id=C16 | |coexpression_cluster_id=C16 | ||
|description=CAGE_peak_22_at_SYT1_5end | |description=CAGE_peak_22_at_SYT1_5end | ||
|id=chr12:79845142..79845155,+ | |id=chr12:79845142..79845155,+ | ||
|ontology_enrichment_celltype=CL:0000242!4.73e-07!2 | |ontology_enrichment_celltype=CL:0000242!4.73e-07!2 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5409!6.27e-07!4 | |ontology_enrichment_disease=DOID:5409!6.27e-07!4 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!2.33e-48!32;UBERON:0002780!2.51e-47!41;UBERON:0001890!2.51e-47!41;UBERON:0006240!2.51e-47!41;UBERON:0001049!1.19e-46!57;UBERON:0005068!1.19e-46!57;UBERON:0006241!1.19e-46!57;UBERON:0007135!1.19e-46!57;UBERON:0003080!4.77e-46!42;UBERON:0001893!3.32e-45!34;UBERON:0002020!3.45e-45!34;UBERON:0003528!3.45e-45!34;UBERON:0002616!8.46e-45!59;UBERON:0000955!8.71e-45!69;UBERON:0006238!8.71e-45!69;UBERON:0002619!1.35e-44!22;UBERON:0002791!1.03e-42!33;UBERON:0001017!3.00e-41!82;UBERON:0005743!3.01e-41!86;UBERON:0001950!7.28e-39!20;UBERON:0000956!7.75e-39!25;UBERON:0000203!7.75e-39!25;UBERON:0000073!1.38e-38!94;UBERON:0001016!1.38e-38!94;UBERON:0003075!1.57e-34!86;UBERON:0007284!1.57e-34!86;UBERON:0003056!1.60e-34!61;UBERON:0002346!1.36e-32!90;UBERON:0000033!1.10e-27!123;UBERON:0000153!6.05e-26!129;UBERON:0007811!6.05e-26!129;UBERON:0007023!2.16e-22!115;UBERON:0004121!3.03e-22!169;UBERON:0000924!1.72e-21!173;UBERON:0006601!1.72e-21!173;UBERON:0000200!1.89e-19!6;UBERON:0001872!1.16e-15!5;UBERON:0000025!4.75e-14!194;UBERON:0000369!1.26e-12!4;UBERON:0002435!1.26e-12!4;UBERON:0000204!1.26e-12!4;UBERON:0010082!1.26e-12!4;UBERON:0004111!5.75e-11!241;UBERON:0002771!6.62e-11!3;UBERON:0000477!1.82e-10!286;UBERON:0000064!2.13e-10!219;UBERON:0005383!2.35e-10!3;UBERON:0005382!2.35e-10!3;UBERON:0000483!2.68e-10!309;UBERON:0000349!3.29e-10!5;UBERON:0002021!3.45e-10!5;UBERON:0000119!4.29e-10!312;UBERON:0001871!5.81e-10!7;UBERON:0002420!1.93e-08!9;UBERON:0007245!1.93e-08!9;UBERON:0010009!1.93e-08!9;UBERON:0010011!1.93e-08!9;UBERON:0000454!1.93e-08!9;UBERON:0002308!2.42e-08!9;UBERON:0000125!2.42e-08!9;UBERON:0000475!1.07e-07!365;UBERON:0001954!1.32e-07!2;UBERON:0003022!1.32e-07!2;UBERON:0002421!1.32e-07!2;UBERON:0002600!1.32e-07!2;UBERON:0001873!1.45e-07!2;UBERON:0010122!1.45e-07!2;UBERON:0001870!2.98e-07!2;UBERON:0009663!3.26e-07!7;UBERON:0000481!9.50e-07!347 | |ontology_enrichment_uberon=UBERON:0001869!2.33e-48!32;UBERON:0002780!2.51e-47!41;UBERON:0001890!2.51e-47!41;UBERON:0006240!2.51e-47!41;UBERON:0001049!1.19e-46!57;UBERON:0005068!1.19e-46!57;UBERON:0006241!1.19e-46!57;UBERON:0007135!1.19e-46!57;UBERON:0003080!4.77e-46!42;UBERON:0001893!3.32e-45!34;UBERON:0002020!3.45e-45!34;UBERON:0003528!3.45e-45!34;UBERON:0002616!8.46e-45!59;UBERON:0000955!8.71e-45!69;UBERON:0006238!8.71e-45!69;UBERON:0002619!1.35e-44!22;UBERON:0002791!1.03e-42!33;UBERON:0001017!3.00e-41!82;UBERON:0005743!3.01e-41!86;UBERON:0001950!7.28e-39!20;UBERON:0000956!7.75e-39!25;UBERON:0000203!7.75e-39!25;UBERON:0000073!1.38e-38!94;UBERON:0001016!1.38e-38!94;UBERON:0003075!1.57e-34!86;UBERON:0007284!1.57e-34!86;UBERON:0003056!1.60e-34!61;UBERON:0002346!1.36e-32!90;UBERON:0000033!1.10e-27!123;UBERON:0000153!6.05e-26!129;UBERON:0007811!6.05e-26!129;UBERON:0007023!2.16e-22!115;UBERON:0004121!3.03e-22!169;UBERON:0000924!1.72e-21!173;UBERON:0006601!1.72e-21!173;UBERON:0000200!1.89e-19!6;UBERON:0001872!1.16e-15!5;UBERON:0000025!4.75e-14!194;UBERON:0000369!1.26e-12!4;UBERON:0002435!1.26e-12!4;UBERON:0000204!1.26e-12!4;UBERON:0010082!1.26e-12!4;UBERON:0004111!5.75e-11!241;UBERON:0002771!6.62e-11!3;UBERON:0000477!1.82e-10!286;UBERON:0000064!2.13e-10!219;UBERON:0005383!2.35e-10!3;UBERON:0005382!2.35e-10!3;UBERON:0000483!2.68e-10!309;UBERON:0000349!3.29e-10!5;UBERON:0002021!3.45e-10!5;UBERON:0000119!4.29e-10!312;UBERON:0001871!5.81e-10!7;UBERON:0002420!1.93e-08!9;UBERON:0007245!1.93e-08!9;UBERON:0010009!1.93e-08!9;UBERON:0010011!1.93e-08!9;UBERON:0000454!1.93e-08!9;UBERON:0002308!2.42e-08!9;UBERON:0000125!2.42e-08!9;UBERON:0000475!1.07e-07!365;UBERON:0001954!1.32e-07!2;UBERON:0003022!1.32e-07!2;UBERON:0002421!1.32e-07!2;UBERON:0002600!1.32e-07!2;UBERON:0001873!1.45e-07!2;UBERON:0010122!1.45e-07!2;UBERON:0001870!2.98e-07!2;UBERON:0009663!3.26e-07!7;UBERON:0000481!9.50e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0002771;2.34e-79;2!UBERON:0001950;1.04e-30;20!UBERON:0002619;4.07e-28;22!UBERON:0000200;2.38e-27;6!UBERON:0000956;5.65e-25;25!UBERON:0000203;5.65e-25;25!UBERON:0001871;1.28e-23;6!UBERON:0001893;4.74e-19;34!UBERON:0003528;3.83e-18;34!UBERON:0002020;3.83e-18;34!UBERON:0001869;3.06e-17;32!UBERON:0002791;1.09e-15;32!UBERON:0000955;1.02e-12;68!UBERON:0002780;5.23e-10;41!UBERON:0001890;5.23e-10;41!UBERON:0001872;2.74e-09;5!UBERON:0001017;3.09e-09;75!UBERON:0002021;3.22e-09;5!UBERON:0000073;1.75e-08;53!UBERON:0002616;1.75e-08;53 | |||
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| ||
|short_description=p22@SYT1 | |short_description=p22@SYT1 | ||
}} | }} |
Latest revision as of 00:16, 25 September 2015
Short description: | p22@SYT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_22_at_SYT1_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | 298bp_to_U19921_5end |
EntrezGene: | SYT1 |
HGNC: | 11509 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 3.49e-79 | 2 |
neocortex | 1.13e-30 | 20 |
regional part of cerebral cortex | 4.37e-28 | 22 |
gyrus | 2.72e-27 | 6 |
cerebral cortex | 6.01e-25 | 25 |
pallium | 6.01e-25 | 25 |
temporal lobe | 1.44e-23 | 6 |
regional part of telencephalon | 7.79e-20 | 32 |
cerebral hemisphere | 7.79e-20 | 32 |
brain grey matter | 9.52e-19 | 34 |
gray matter | 9.52e-19 | 34 |
telencephalon | 9.52e-19 | 34 |
regional part of forebrain | 9.39e-16 | 41 |
forebrain | 9.39e-16 | 41 |
anterior neural tube | 9.39e-16 | 41 |
future forebrain | 9.39e-16 | 41 |
brain | 9.02e-15 | 68 |
future brain | 9.02e-15 | 68 |
central nervous system | 1.45e-12 | 81 |
regional part of nervous system | 2.04e-12 | 53 |
regional part of brain | 2.04e-12 | 53 |
neural tube | 8.46e-12 | 56 |
neural rod | 8.46e-12 | 56 |
future spinal cord | 8.46e-12 | 56 |
neural keel | 8.46e-12 | 56 |
nervous system | 2.13e-11 | 89 |
pre-chordal neural plate | 6.67e-11 | 61 |
parietal lobe | 2.74e-09 | 5 |
occipital lobe | 3.22e-09 | 5 |
neural plate | 2.64e-08 | 82 |
presumptive neural plate | 2.64e-08 | 82 |
neurectoderm | 5.98e-08 | 86 |