FFCP PHASE1:Hg19::chr12:7245139..7245150,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1246 | |HGNC=1246 | ||
|TSSclassifier=strong | |||
|UniProt=F5H3A3 | |UniProt=F5H3A3 | ||
|association_with_transcript=-3bp_to_ENST00000540610_5end | |association_with_transcript=-3bp_to_ENST00000540610_5end | ||
|cluster_id=chr12:7245139..7245150,- | |||
|coexpression_cluster_id=C3330 | |coexpression_cluster_id=C3330 | ||
|description=CAGE_peak_4_at_C1R_5end | |description=CAGE_peak_4_at_C1R_5end | ||
|id=chr12:7245139..7245150,- | |id=chr12:7245139..7245150,- | ||
|ontology_enrichment_celltype=CL:0000055!3.40e-23!180;CL:0000057!4.88e-14!75;CL:0000183!1.11e-08!59;CL:0000680!1.67e-08!57;CL:0000056!1.67e-08!57;CL:0000355!1.67e-08!57;CL:0000187!6.74e-08!54 | |ontology_enrichment_celltype=CL:0000055!3.40e-23!180;CL:0000057!4.88e-14!75;CL:0000183!1.11e-08!59;CL:0000680!1.67e-08!57;CL:0000056!1.67e-08!57;CL:0000355!1.67e-08!57;CL:0000187!6.74e-08!54 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.08e-14,76;CL:0000680,3.79e-08,58;CL:0000056,3.79e-08,58;CL:0000355,3.79e-08,58;CL:0000187,1.78e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.31e-16!365;UBERON:0000481!5.27e-15!347;UBERON:0005256!2.00e-10!143;UBERON:0000477!5.89e-10!286;UBERON:0000468!2.09e-09!659;UBERON:0002385!3.63e-09!63;UBERON:0001015!3.63e-09!63;UBERON:0000383!3.63e-09!63;UBERON:0000914!6.36e-09!83;UBERON:0002329!6.36e-09!83;UBERON:0003077!6.36e-09!83;UBERON:0003059!6.36e-09!83;UBERON:0007282!6.36e-09!83;UBERON:0009618!6.36e-09!83;UBERON:0007285!6.36e-09!83;UBERON:0001134!1.18e-08!61;UBERON:0002036!1.18e-08!61;UBERON:0003082!1.18e-08!61;UBERON:0003104!3.06e-08!238;UBERON:0009142!3.06e-08!238;UBERON:0002100!3.23e-08!216;UBERON:0000119!5.66e-08!312;UBERON:0000483!6.33e-08!309;UBERON:0004290!8.79e-08!70;UBERON:0000486!3.05e-07!82 | |ontology_enrichment_uberon=UBERON:0000475!3.31e-16!365;UBERON:0000481!5.27e-15!347;UBERON:0005256!2.00e-10!143;UBERON:0000477!5.89e-10!286;UBERON:0000468!2.09e-09!659;UBERON:0002385!3.63e-09!63;UBERON:0001015!3.63e-09!63;UBERON:0000383!3.63e-09!63;UBERON:0000914!6.36e-09!83;UBERON:0002329!6.36e-09!83;UBERON:0003077!6.36e-09!83;UBERON:0003059!6.36e-09!83;UBERON:0007282!6.36e-09!83;UBERON:0009618!6.36e-09!83;UBERON:0007285!6.36e-09!83;UBERON:0001134!1.18e-08!61;UBERON:0002036!1.18e-08!61;UBERON:0003082!1.18e-08!61;UBERON:0003104!3.06e-08!238;UBERON:0009142!3.06e-08!238;UBERON:0002100!3.23e-08!216;UBERON:0000119!5.66e-08!312;UBERON:0000483!6.33e-08!309;UBERON:0004290!8.79e-08!70;UBERON:0000486!3.05e-07!82 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.31e-10,160;UBERON:0009142,1.31e-10,160;UBERON:0005256,2.63e-10,122;UBERON:0002385,4.45e-09,64;UBERON:0001015,4.45e-09,64;UBERON:0000383,4.45e-09,64;UBERON:0001134,1.65e-08,62;UBERON:0002036,1.65e-08,62;UBERON:0003082,1.65e-08,62;UBERON:0007524,1.21e-07,73;UBERON:0003077,2.44e-07,72;UBERON:0007285,2.44e-07,72;UBERON:0002329,3.41e-07,71;UBERON:0003059,3.41e-07,71;UBERON:0007282,3.41e-07,71;UBERON:0004290,3.41e-07,71;UBERON:0009618,3.41e-07,71 | |||
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|phase1_expression=8.72056220498672,4.49611100171065,8.73917305395021,1.0007329835313,7.15137751083661,6.10636966870258,0,5.68547886084148,6.7908263331958,0.737201809504527,0.697801167972428,0,0,9.40624282496354,4.97096063591874,3.36162573225888,1.80808358407193,2.19093027116212,0.975865597581014,3.57051068422685,1.42800483870977,5.95563970808367,3.72106783270374,0.410623275218653,0.376627918784408,0,0,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0.587200878669695,0.553995408531877,0,0.217010870715852,0.447830948479849,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0.222820913770347,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,6.03630773733273,4.09160197899297,6.14446559053763,10.5280961233537,7.38717246700201,7.15757352345989,7.29952305453954,1.51255707462509,0.665188192387692,0.614843499851882,1.76821751921912,4.00724817121796,1.11235332835329,0,0.174129737299267,0.132957960518865,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,0,0.419499436209906,0.275118041940067,0,0,0,0,0.805658634218294,0,0.24406205754817,0,0,0.17859945656816,0.673588117878509,0.112611480483322,0,0,0.366403487860815,0,0,3.48875241714027,3.47880366186723,2.5326102332916,2.1185468930115,13.7681577959431,3.54668382198357,3.92474320099615,1.06748995729705,0.74000264525148,8.09148692039392,1.21239604862719,1.14423332179421,4.69208025699287,5.18558332031999,2.81185718200556,0.624320153660641,0,3.13842229158782,0.352303495931295,0.809364721840658,0.140450806702248,2.04154171254893,0.859840221182376,4.02970546585485,8.31602000097437,6.92347401979959,4.55080680969013,8.62341770179486,0.673344455816265,1.25118519871964,1.10825646193673,3.07284334616587,1.83892677479412,5.40857012063748,1.58805056424029,1.97328599257748,7.68806599746843,7.84148034290379,5.70173082560364,5.77094163735258,3.86460810068444,5.58350568994769,6.41350062516812,3.99491721160914,2.77677151668526,11.3221375330028,9.05217918185347,3.90510551768276,1.81353776809752,1.52604533079439,0,1.09098448236334,0,0.731842236777572,0.662648841607426,0.116193942869518,0.207322110030741,0.252320850875628,0.36497735907583,1.56449532329816,7.07565032012174,0,9.75172648867156,5.77503585335668,2.83936320095625,1.68584690078102,0.241011029883482,2.09558548191549,2.17879444092406,0.949082476444386,2.83145747136345,2.15843611637881,1.15424147083917,0,0,7.4083322039652,8.82052268313252,41.8291614912042,33.4161253670393,15.9513274803979,0,0.245976877086227,0.857839051492628,0.109750285408626,0,0.502644862058154,0.740707561268237,0,1.03993478527958,1.44331342025273,1.04337364477569,1.05667824812239,1.58803092537181,0.462985512576611,1.14152491340759,0,0,0,0.234004265139238,0,0,1.00789276919316,0.425325291727159,0.53735113621709,0.290633938513962,0,3.94130590316755,2.72950145441001,0,0,0.25248486685276,0.253991577168676,1.52795370223311,4.68869788840188,1.71072446022705,0.102827492703324,0.600686115687835,0,0.336393253036082,3.05172048183296,0.36669142910475,4.65378176728,21.4593867511129,3.381211010224,2.12750493267896,0,2.82928111688356,0,0.266422179016099,3.28849385413739,9.22456729165453,6.58592269424615,1.62868092146868,3.909311436168,0,3.91871190177462,0.871533458600294,1.69954085009497,0,0,0,0.718874566474748,4.59447743336456,1.42636905040718,1.88215698667853,3.90405012845728,3.04403637507822,0.112085143993527,0.197030760201927,0,0,2.03275699377971,1.30139853857622,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,16.4406598903647,9.00306937907419,2.71265023699736,1.45579603071565,1.96271887676878,2.20783381047509,4.68565659970853,8.72743689210385,11.3703752027992,7.24311499047534,2.65690239414175,0.184369168541703,5.90808578382963,12.7270752350781,6.17658162859541,0,0,0,0,0,0.30239029332968,3.72161711728165,4.75732117192994,4.77122160536225,4.61300937320523,4.09365799253363,3.05622450172854,1.48418066444991,1.3878872442239,2.84098760501003,3.44934055257998,4.67328986265259,2.09178681227927,0,0,0.184161977871793,3.21480454860899,1.63882051206045,3.40923478894503,0.451199612907412,0.0770153371044148,0,0,0,1.13733384070897,0.170093705276516,0,0,1.89662506280697,2.00675909541941,0.254876273045038,0,0.223874754722178,0,0,2.3080511260475,3.28014645699706,1.62689197332152,12.5710034210221,0.457847324091717,0.660075999364704,0.574265537996172,0.650060246036521,9.64103579064957,4.64019447802185,2.31072925671967,2.6095624703442,1.24052915236078,9.56040179327635,4.93056759308377,1.36362603865761,6.94449878044551,0.661139661443912,0.192190067365106,0,0.4046311234222,0.464845549297286,6.92587163027408,4.1822236209636,5.23657086299351,0,0.869932992075073,0.55597265731176,0.429374660225974,1.86079184679834,1.89827654831236,4.38449446024797,5.11795582622668,10.698474700848,5.09125196681499,0.78494864019923,2.69808686374972,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| ||
|short_description=p4@C1R | |short_description=p4@C1R | ||
}} | }} |
Latest revision as of 18:07, 24 September 2015
Short description: | p4@C1R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_C1R_5end |
Coexpression cluster: | C3330_Hepatocyte_liver_Mesenchymal_tenocyte_Synoviocyte_Fibroblast_Nucleus |
Association with transcript: | -3bp_to_ENST00000540610_5end |
EntrezGene: | NA |
HGNC: | 1246 |
UniProt: | F5H3A3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.08e-14 | 76 |
muscle precursor cell | 3.79e-08 | 58 |
myoblast | 3.79e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.79e-08 | 58 |
muscle cell | 1.78e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.31e-10 | 160 |
entire embryonic mesenchyme | 1.31e-10 | 160 |
trunk mesenchyme | 2.63e-10 | 122 |
muscle tissue | 4.45e-09 | 64 |
musculature | 4.45e-09 | 64 |
musculature of body | 4.45e-09 | 64 |
skeletal muscle tissue | 1.65e-08 | 62 |
striated muscle tissue | 1.65e-08 | 62 |
myotome | 1.65e-08 | 62 |
dense mesenchyme tissue | 1.21e-07 | 73 |
paraxial mesoderm | 2.44e-07 | 72 |
presumptive paraxial mesoderm | 2.44e-07 | 72 |
somite | 3.41e-07 | 71 |
presomitic mesoderm | 3.41e-07 | 71 |
presumptive segmental plate | 3.41e-07 | 71 |
dermomyotome | 3.41e-07 | 71 |
trunk paraxial mesoderm | 3.41e-07 | 71 |