FFCP PHASE1:Hg19::chr12:56352368..56352379,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=81bp_to_ENST00000556802_5end | |association_with_transcript=81bp_to_ENST00000556802_5end | ||
|cluster_id=chr12:56352368..56352379,- | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_13_at_PMEL_5end | |description=CAGE_peak_13_at_PMEL_5end | ||
|id=chr12:56352368..56352379,- | |id=chr12:56352368..56352379,- | ||
|ontology_enrichment_celltype=CL:0000147!1.29e-81!14;CL:0000148!4.74e-80!10;CL:0000541!4.74e-80!10;CL:0000710!2.37e-47!20;CL:0000075!1.27e-34!27;CL:0000325!4.93e-28!39;CL:0002077!5.29e-28!33;CL:0002322!1.34e-25!5;CL:0002567!1.71e-25!3;CL:0000133!4.48e-20!59;CL:0000149!5.15e-19!4;CL:0000333!1.91e-17!41;CL:0000221!2.13e-16!71;CL:0002586!9.83e-12!3;CL:0002566!1.21e-09!1 | |ontology_enrichment_celltype=CL:0000147!1.29e-81!14;CL:0000148!4.74e-80!10;CL:0000541!4.74e-80!10;CL:0000710!2.37e-47!20;CL:0000075!1.27e-34!27;CL:0000325!4.93e-28!39;CL:0002077!5.29e-28!33;CL:0002322!1.34e-25!5;CL:0002567!1.71e-25!3;CL:0000133!4.48e-20!59;CL:0000149!5.15e-19!4;CL:0000333!1.91e-17!41;CL:0000221!2.13e-16!71;CL:0002586!9.83e-12!3;CL:0002566!1.21e-09!1 | ||
|ontology_enrichment_celltype_v019=CL:0000148;8.11e-107;10!CL:0000147;2.15e-76;14!CL:0002567;6.57e-66;3!CL:0000710;1.49e-53;20!CL:0000075;1.02e-39;27!CL:0002077;8.29e-28;34!CL:0002566;3.28e-23;1!CL:0000149;6.68e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,6.94e-107,10;CL:0000541,6.94e-107,10;CL:0000147,1.92e-76,14;CL:0002567,4.71e-66,3;CL:0000710,1.38e-53,20;CL:0000075,9.65e-40,27;CL:0002077,1.38e-31,34;CL:0000333,5.46e-25,41;CL:0002566,3.28e-23,1;CL:0000133,1.29e-17,59;CL:0000221,1.65e-14,72;CL:0000149,6.87e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000133;1.32e-09;59!CL:0000221;4.33e-08;72 | |||
|ontology_enrichment_disease=DOID:1909!1.76e-17!2 | |ontology_enrichment_disease=DOID:1909!1.76e-17!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.91e-44;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.39e-44,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!4.65e-15!5;UBERON:0005388!4.65e-15!5;UBERON:0001802!4.65e-15!5;UBERON:0001781!9.83e-12!3;UBERON:0001782!9.83e-12!3;UBERON:0005424!9.83e-12!3 | |ontology_enrichment_uberon=UBERON:0000966!4.65e-15!5;UBERON:0005388!4.65e-15!5;UBERON:0001802!4.65e-15!5;UBERON:0001781!9.83e-12!3;UBERON:0001782!9.83e-12!3;UBERON:0005424!9.83e-12!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001003;8.58e-07;15!UBERON:0007376;8.58e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,8.83e-07,15;UBERON:0007376,8.83e-07,15;UBERON:0007383,8.83e-07,15 | |||
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|short_description=p13@PMEL | |short_description=p13@PMEL | ||
}} | }} |
Latest revision as of 09:13, 19 September 2015
Short description: | p13@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_PMEL_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 81bp_to_ENST00000556802_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 6.94e-107 | 10 |
melanoblast | 6.94e-107 | 10 |
pigment cell | 1.92e-76 | 14 |
light melanocyte | 4.71e-66 | 3 |
neurecto-epithelial cell | 1.38e-53 | 20 |
columnar/cuboidal epithelial cell | 9.65e-40 | 27 |
ecto-epithelial cell | 1.38e-31 | 34 |
migratory neural crest cell | 5.46e-25 | 41 |
dark melanocyte | 3.28e-23 | 1 |
neurectodermal cell | 1.29e-17 | 59 |
ectodermal cell | 1.65e-14 | 72 |
visual pigment cell | 6.87e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 8.83e-07 | 15 |
outer epithelium | 8.83e-07 | 15 |
enveloping layer of ectoderm | 8.83e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.39e-44 | 2 |