FFCP PHASE1:Hg19::chr12:53907724..53907729,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-38bp_to_ENST00000548347,uc001sdx.2_5end | |association_with_transcript=-38bp_to_ENST00000548347,uc001sdx.2_5end | ||
|cluster_id=chr12:53907724..53907729,+ | |||
|coexpression_cluster_id=C95 | |coexpression_cluster_id=C95 | ||
|description=CAGE_peak_1_at_ENST00000548347_5end,CAGE_peak_1_at_uc001sdx.2_5end | |description=CAGE_peak_1_at_ENST00000548347_5end,CAGE_peak_1_at_uc001sdx.2_5end | ||
|id=chr12:53907724..53907729,+ | |id=chr12:53907724..53907729,+ | ||
|ontology_enrichment_celltype=CL:0000990!8.21e-07!8 | |ontology_enrichment_celltype=CL:0000990!8.21e-07!8 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.81e-23;5!UBERON:0008947;3.69e-16;29!UBERON:0001041;2.92e-09;30 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000341!1.05e-13!2;UBERON:0002171!4.28e-08!1;UBERON:0006518!4.28e-08!1;UBERON:0008949!4.28e-08!1;UBERON:0000101!4.28e-08!1;UBERON:0002167!4.28e-08!1;UBERON:0007023!5.99e-08!115;UBERON:0001831!7.76e-08!1;UBERON:0001567!7.76e-08!1;UBERON:0008801!7.76e-08!1;UBERON:0002372!1.91e-07!1;UBERON:0001961!1.91e-07!1;UBERON:0001744!1.91e-07!1;UBERON:0001735!1.91e-07!1;UBERON:0002363!2.17e-07!1;UBERON:0007647!2.17e-07!1;UBERON:0010115!2.17e-07!1 | |ontology_enrichment_uberon=UBERON:0000341!1.05e-13!2;UBERON:0002171!4.28e-08!1;UBERON:0006518!4.28e-08!1;UBERON:0008949!4.28e-08!1;UBERON:0000101!4.28e-08!1;UBERON:0002167!4.28e-08!1;UBERON:0007023!5.99e-08!115;UBERON:0001831!7.76e-08!1;UBERON:0001567!7.76e-08!1;UBERON:0008801!7.76e-08!1;UBERON:0002372!1.91e-07!1;UBERON:0001961!1.91e-07!1;UBERON:0001744!1.91e-07!1;UBERON:0001735!1.91e-07!1;UBERON:0002363!2.17e-07!1;UBERON:0007647!2.17e-07!1;UBERON:0010115!2.17e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002171;7.48e-30;1!UBERON:0006518;7.48e-30;1!UBERON:0008949;7.48e-30;1!UBERON:0000101;7.48e-30;1!UBERON:0002167;7.48e-30;1!UBERON:0002046;1.81e-23;5!UBERON:0003127;2.05e-15;2!UBERON:0002048;2.26e-12;22!UBERON:0000117;2.26e-12;22!UBERON:0000171;2.26e-12;22!UBERON:0000170;2.26e-12;22!UBERON:0005178;3.67e-11;34!UBERON:0002224;3.67e-11;34!UBERON:0000065;1.58e-08;44!UBERON:0005181;1.59e-08;35!UBERON:0000915;5.75e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,7.48e-30,1;UBERON:0006518,7.48e-30,1;UBERON:0008949,7.48e-30,1;UBERON:0000101,7.48e-30,1;UBERON:0002167,7.48e-30,1;UBERON:0002046,1.44e-23,5;UBERON:0004117,1.44e-23,5;UBERON:0007689,1.44e-23,5;UBERON:0007123,1.44e-23,5;UBERON:0003091,1.44e-23,5;UBERON:0003127,2.37e-15,2;UBERON:0005178,7.26e-14,34;UBERON:0002224,7.26e-14,34;UBERON:0005181,1.75e-13,35;UBERON:0008947,1.84e-12,38;UBERON:0003258,1.84e-12,38;UBERON:0002048,2.17e-12,22;UBERON:0000117,2.17e-12,22;UBERON:0000171,2.17e-12,22;UBERON:0000170,2.17e-12,22;UBERON:0005597,2.17e-12,22;UBERON:0000118,2.17e-12,22;UBERON:0009722,2.68e-11,11;UBERON:0007690,2.68e-11,11;UBERON:0000915,3.09e-09,52;UBERON:0005911,5.32e-09,82;UBERON:0000065,6.55e-09,54;UBERON:0005153,1.22e-07,37;UBERON:0008814,2.86e-07,18;UBERON:0001007,3.33e-07,145;UBERON:0001555,3.33e-07,145;UBERON:0007026,3.33e-07,145 | |||
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|short_description=p1@ENST00000548347,p1@uc001sdx.2 | |short_description=p1@ENST00000548347,p1@uc001sdx.2 | ||
}} | }} |
Latest revision as of 09:53, 24 July 2015
Short description: | p1@ENST00000548347, p1@uc001sdx.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000548347_5end, CAGE_peak_1_at_uc001sdx.2_5end |
Coexpression cluster: | C95_lung_aorta_trachea_penis_Alveolar_throat_endometrioid |
Association with transcript: | -38bp_to_ENST00000548347, uc001sdx.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 7.48e-30 | 1 |
right lung lobe | 7.48e-30 | 1 |
lower lobe of lung | 7.48e-30 | 1 |
lobe of lung | 7.48e-30 | 1 |
right lung | 7.48e-30 | 1 |
thyroid gland | 1.44e-23 | 5 |
pharyngeal pouch | 1.44e-23 | 5 |
thyroid diverticulum | 1.44e-23 | 5 |
pharyngeal pouch 2 | 1.44e-23 | 5 |
thyroid primordium | 1.44e-23 | 5 |
open tracheal system trachea | 2.37e-15 | 2 |
thoracic cavity element | 7.26e-14 | 34 |
thoracic cavity | 7.26e-14 | 34 |
thoracic segment organ | 1.75e-13 | 35 |
respiratory primordium | 1.84e-12 | 38 |
endoderm of foregut | 1.84e-12 | 38 |
lung | 2.17e-12 | 22 |
respiratory tube | 2.17e-12 | 22 |
respiration organ | 2.17e-12 | 22 |
pair of lungs | 2.17e-12 | 22 |
lung primordium | 2.17e-12 | 22 |
lung bud | 2.17e-12 | 22 |
entire pharyngeal arch endoderm | 2.68e-11 | 11 |
early pharyngeal endoderm | 2.68e-11 | 11 |
thoracic segment of trunk | 3.09e-09 | 52 |
endo-epithelium | 5.32e-09 | 82 |
respiratory tract | 6.55e-09 | 54 |
epithelial bud | 1.22e-07 | 37 |
pharyngeal arch system | 2.86e-07 | 18 |
digestive system | 3.33e-07 | 145 |
digestive tract | 3.33e-07 | 145 |
primitive gut | 3.33e-07 | 145 |