FFCP PHASE1:Hg19::chr12:24097236..24097256,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6660 | |EntrezGene=6660 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11201 | |HGNC=11201 | ||
|TSSclassifier=strong | |||
|UniProt=F5GWL1 | |UniProt=F5GWL1 | ||
|association_with_transcript=29bp_to_ENST00000538083_5end | |association_with_transcript=29bp_to_ENST00000538083_5end | ||
|cluster_id=chr12:24097236..24097256,- | |||
|coexpression_cluster_id=C3267 | |coexpression_cluster_id=C3267 | ||
|description=CAGE_peak_9_at_SOX5_5end | |description=CAGE_peak_9_at_SOX5_5end | ||
|id=chr12:24097236..24097256,- | |id=chr12:24097236..24097256,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000138;3.39e-11;6!CL:0000047;6.93e-09;2!CL:0000153;9.20e-08;9!CL:0000447;9.20e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000058,2.91e-11,6;CL:0000138,2.91e-11,6;CL:0000153,8.31e-08,9;CL:0000447,8.31e-08,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:154;6.93e-09;2!DOID:4236;6.93e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,6.42e-09,2;DOID:4236,6.42e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001893!4.26e-55!34;UBERON:0001869!5.58e-54!32;UBERON:0001049!6.65e-53!57;UBERON:0005068!6.65e-53!57;UBERON:0006241!6.65e-53!57;UBERON:0007135!6.65e-53!57;UBERON:0002791!6.34e-52!33;UBERON:0002020!3.48e-50!34;UBERON:0003528!3.48e-50!34;UBERON:0002780!8.18e-49!41;UBERON:0001890!8.18e-49!41;UBERON:0006240!8.18e-49!41;UBERON:0002619!2.56e-48!22;UBERON:0005743!6.77e-48!86;UBERON:0001017!8.96e-48!82;UBERON:0003080!1.59e-47!42;UBERON:0001950!1.92e-47!20;UBERON:0000956!2.72e-47!25;UBERON:0000203!2.72e-47!25;UBERON:0002616!4.09e-44!59;UBERON:0003075!8.77e-43!86;UBERON:0007284!8.77e-43!86;UBERON:0000073!1.31e-42!94;UBERON:0001016!1.31e-42!94;UBERON:0000955!6.39e-42!69;UBERON:0006238!6.39e-42!69;UBERON:0002346!1.61e-40!90;UBERON:0003056!1.44e-33!61;UBERON:0007023!1.30e-29!115;UBERON:0000153!1.30e-25!129;UBERON:0007811!1.30e-25!129;UBERON:0000033!1.03e-23!123;UBERON:0004121!4.94e-23!169;UBERON:0000924!2.68e-22!173;UBERON:0006601!2.68e-22!173;UBERON:0001871!2.75e-22!7;UBERON:0000200!1.27e-15!6;UBERON:0000025!1.43e-15!194;UBERON:0001872!2.00e-12!5;UBERON:0000349!2.39e-12!5;UBERON:0002771!6.75e-12!3;UBERON:0002021!1.07e-11!5;UBERON:0004111!6.60e-11!241;UBERON:0000064!5.29e-10!219;UBERON:0002420!5.43e-10!9;UBERON:0007245!5.43e-10!9;UBERON:0010009!5.43e-10!9;UBERON:0010011!5.43e-10!9;UBERON:0000454!5.43e-10!9;UBERON:0000483!1.84e-09!309;UBERON:0000477!2.15e-09!286;UBERON:0000119!2.77e-09!312;UBERON:0000475!2.90e-09!365;UBERON:0001876!1.74e-08!2;UBERON:0000341!4.35e-08!2;UBERON:0003076!8.83e-08!15;UBERON:0003057!8.83e-08!15;UBERON:0003127!8.89e-08!2;UBERON:0002298!4.51e-07!8 | |ontology_enrichment_uberon=UBERON:0001893!4.26e-55!34;UBERON:0001869!5.58e-54!32;UBERON:0001049!6.65e-53!57;UBERON:0005068!6.65e-53!57;UBERON:0006241!6.65e-53!57;UBERON:0007135!6.65e-53!57;UBERON:0002791!6.34e-52!33;UBERON:0002020!3.48e-50!34;UBERON:0003528!3.48e-50!34;UBERON:0002780!8.18e-49!41;UBERON:0001890!8.18e-49!41;UBERON:0006240!8.18e-49!41;UBERON:0002619!2.56e-48!22;UBERON:0005743!6.77e-48!86;UBERON:0001017!8.96e-48!82;UBERON:0003080!1.59e-47!42;UBERON:0001950!1.92e-47!20;UBERON:0000956!2.72e-47!25;UBERON:0000203!2.72e-47!25;UBERON:0002616!4.09e-44!59;UBERON:0003075!8.77e-43!86;UBERON:0007284!8.77e-43!86;UBERON:0000073!1.31e-42!94;UBERON:0001016!1.31e-42!94;UBERON:0000955!6.39e-42!69;UBERON:0006238!6.39e-42!69;UBERON:0002346!1.61e-40!90;UBERON:0003056!1.44e-33!61;UBERON:0007023!1.30e-29!115;UBERON:0000153!1.30e-25!129;UBERON:0007811!1.30e-25!129;UBERON:0000033!1.03e-23!123;UBERON:0004121!4.94e-23!169;UBERON:0000924!2.68e-22!173;UBERON:0006601!2.68e-22!173;UBERON:0001871!2.75e-22!7;UBERON:0000200!1.27e-15!6;UBERON:0000025!1.43e-15!194;UBERON:0001872!2.00e-12!5;UBERON:0000349!2.39e-12!5;UBERON:0002771!6.75e-12!3;UBERON:0002021!1.07e-11!5;UBERON:0004111!6.60e-11!241;UBERON:0000064!5.29e-10!219;UBERON:0002420!5.43e-10!9;UBERON:0007245!5.43e-10!9;UBERON:0010009!5.43e-10!9;UBERON:0010011!5.43e-10!9;UBERON:0000454!5.43e-10!9;UBERON:0000483!1.84e-09!309;UBERON:0000477!2.15e-09!286;UBERON:0000119!2.77e-09!312;UBERON:0000475!2.90e-09!365;UBERON:0001876!1.74e-08!2;UBERON:0000341!4.35e-08!2;UBERON:0003076!8.83e-08!15;UBERON:0003057!8.83e-08!15;UBERON:0003127!8.89e-08!2;UBERON:0002298!4.51e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0002022;9.57e-17;1!UBERON:0001882;1.93e-16;1!UBERON:0005403;1.93e-16;1!UBERON:0001950;4.14e-12;20!UBERON:0002619;4.42e-11;22!UBERON:0002791;6.83e-11;32!UBERON:0001869;1.09e-10;32!UBERON:0003528;3.19e-10;34!UBERON:0002020;3.19e-10;34!UBERON:0000956;7.80e-10;25!UBERON:0000203;7.80e-10;25!UBERON:0000073;3.14e-09;53!UBERON:0002616;3.14e-09;53!UBERON:0001893;8.02e-09;34!UBERON:0002780;2.35e-08;41!UBERON:0001890;2.35e-08;41!UBERON:0000955;3.29e-07;68!UBERON:0001017;3.78e-07;75!UBERON:0001016;4.75e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002022,1.04e-16,1;UBERON:0001882,2.63e-16,1;UBERON:0005403,2.63e-16,1;UBERON:0001950,4.27e-12,20;UBERON:0002791,1.14e-11,32;UBERON:0001869,1.14e-11,32;UBERON:0001017,3.92e-11,81;UBERON:0002619,4.54e-11,22;UBERON:0003528,5.27e-11,34;UBERON:0002020,5.27e-11,34;UBERON:0001893,5.27e-11,34;UBERON:0000955,2.96e-10,68;UBERON:0006238,2.96e-10,68;UBERON:0001016,5.60e-10,89;UBERON:0000073,5.75e-10,53;UBERON:0002616,5.75e-10,53;UBERON:0000956,7.99e-10,25;UBERON:0000203,7.99e-10,25;UBERON:0001049,1.98e-09,56;UBERON:0005068,1.98e-09,56;UBERON:0006241,1.98e-09,56;UBERON:0007135,1.98e-09,56;UBERON:0002780,3.61e-09,41;UBERON:0001890,3.61e-09,41;UBERON:0003080,3.61e-09,41;UBERON:0006240,3.61e-09,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85870796139317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5905718941022,3.89307896242109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21360521749513,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,0.185536196323703,0,0,0,0,0,0,0,0,0,1.38899995946634,0,0.361789315876224,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,3.36680037793539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886351143382302,0,0,0,0,0,0.572682980829578,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.86661500537946,0.988990300573997,0.741438982396034,0,0,0,0.681017030557878,0,0,0,0,0,2.61223093629506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854183854313742,0.751145584238999,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15612605173627,0,0.159633859057151,0.41023272848151,2.7727886584389,0.138314504928436,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,0,0.620060389503552,0.634158101939068,3.82882366312754,0,0,0,0,0,0,0,0.227662191351298,0,0,0,1.08751572762931,0.855046056317038,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0.475940431336403,5.23620828408453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.476128862927481,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.85870796139317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5905718941022,3.89307896242109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21360521749513,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,0.185536196323703,0,0,0,0,0,0,0,0,0,1.38899995946634,0,0.361789315876224,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,3.36680037793539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886351143382302,0,0,0,0,0,0.572682980829578,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.86661500537946,0.988990300573997,0.741438982396034,0,0,0,0.681017030557878,0,0,0,0,0,2.61223093629506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854183854313742,0.751145584238999,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15612605173627,0,0.159633859057151,0.41023272848151,2.7727886584389,0.138314504928436,0.968853873791107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,0,0.620060389503552,0.634158101939068,3.82882366312754,0,0,0,0,0,0,0,0.227662191351298,0,0,0,1.08751572762931,0.855046056317038,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0.315543124386369,0.475940431336403,5.23620828408453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.476128862927481,0,0,0,0,0,0,0,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p9@SOX5 | |short_description=p9@SOX5 | ||
}} | }} |
Latest revision as of 20:57, 17 September 2015
Short description: | p9@SOX5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SOX5_5end |
Coexpression cluster: | C3267_temporal_parietal_duodenum_Chondrocyte_colon_occipital_Neural |
Association with transcript: | 29bp_to_ENST00000538083_5end |
EntrezGene: | SOX5 |
HGNC: | 11201 |
UniProt: | F5GWL1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 2.91e-11 | 6 |
chondrocyte | 2.91e-11 | 6 |
GAG secreting cell | 8.31e-08 | 9 |
carbohydrate secreting cell | 8.31e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
insula | 1.04e-16 | 1 |
nucleus accumbens | 2.63e-16 | 1 |
ventral striatum | 2.63e-16 | 1 |
neocortex | 4.27e-12 | 20 |
regional part of telencephalon | 1.14e-11 | 32 |
cerebral hemisphere | 1.14e-11 | 32 |
central nervous system | 3.92e-11 | 81 |
regional part of cerebral cortex | 4.54e-11 | 22 |
brain grey matter | 5.27e-11 | 34 |
gray matter | 5.27e-11 | 34 |
telencephalon | 5.27e-11 | 34 |
brain | 2.96e-10 | 68 |
future brain | 2.96e-10 | 68 |
nervous system | 5.60e-10 | 89 |
regional part of nervous system | 5.75e-10 | 53 |
regional part of brain | 5.75e-10 | 53 |
cerebral cortex | 7.99e-10 | 25 |
pallium | 7.99e-10 | 25 |
neural tube | 1.98e-09 | 56 |
neural rod | 1.98e-09 | 56 |
future spinal cord | 1.98e-09 | 56 |
neural keel | 1.98e-09 | 56 |
regional part of forebrain | 3.61e-09 | 41 |
forebrain | 3.61e-09 | 41 |
anterior neural tube | 3.61e-09 | 41 |
future forebrain | 3.61e-09 | 41 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 6.42e-09 | 2 |
carcinosarcoma | 6.42e-09 | 2 |