FFCP PHASE1:Hg19::chr17:76123388..76123414,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:76123388..76123414,-
|short_description=p9@TMC6
|description=CAGE_peak_9_at_TMC6_5end
|association_with_transcript=-349bp_to_uc002juj.1_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11322 | |EntrezGene=11322 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18021 | |HGNC=18021 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z403 | |UniProt=Q7Z403 | ||
|association_with_transcript=-349bp_to_uc002juj.1_5end | |||
|cluster_id=chr17:76123388..76123414,- | |||
|description=CAGE_peak_9_at_TMC6_5end | |||
|id=chr17:76123388..76123414,- | |||
|ontology_enrichment_celltype=CL:0000988!3.43e-32!182;CL:0000037!8.63e-32!172;CL:0000566!8.63e-32!172;CL:0002032!2.49e-29!165;CL:0000837!2.49e-29!165;CL:0000542!4.12e-24!53;CL:0000051!4.12e-24!53;CL:0000838!3.69e-23!52;CL:0000738!2.41e-21!140;CL:0002031!1.01e-20!124;CL:0002087!2.33e-20!119;CL:0000084!5.58e-20!25;CL:0000827!5.58e-20!25;CL:0000791!5.72e-17!18;CL:0000789!5.72e-17!18;CL:0002420!5.72e-17!18;CL:0002419!5.72e-17!18;CL:0000790!5.72e-17!18;CL:0000763!1.51e-09!112;CL:0000049!1.51e-09!112;CL:0000625!2.39e-09!11;CL:0000080!5.18e-09!6;CL:0000624!8.19e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;8.20e-10;25!CL:0000895;1.97e-08;1!CL:0000542;1.29e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.95e-12,52;CL:0000542,7.18e-12,53;CL:0000051,7.18e-12,53;CL:0000084,1.26e-09,25;CL:0000827,1.26e-09,25;CL:0000810,1.84e-08,1;CL:0000895,1.84e-08,1;CL:0002436,1.84e-08,1;CL:0002427,1.84e-08,1;CL:0002428,1.84e-08,1;CL:0002429,1.84e-08,1;CL:0002433,1.84e-08,1;CL:0002431,1.84e-08,1;CL:0002432,1.84e-08,1 | |||
|ontology_enrichment_development_v019=CL:0002427;1.97e-08;1!CL:0000051;1.29e-07;53 | |||
|ontology_enrichment_disease=DOID:2531!4.01e-21!51;DOID:0060083!4.01e-21!51;DOID:1240!9.40e-20!39;DOID:8692!9.35e-13!31;DOID:1036!8.09e-08!8 | |||
|ontology_enrichment_disease_v019=DOID:630;1.97e-08;1!DOID:0050177;1.97e-08;1!DOID:0050427;1.97e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.18e-08,1;DOID:0050177,1.18e-08,1;DOID:0050427,1.18e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!3.04e-10!15;UBERON:0000179!3.04e-10!15;UBERON:0000463!3.04e-10!15;UBERON:0002390!8.08e-09!102;UBERON:0003061!8.08e-09!102;UBERON:0002193!8.84e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.57e-08;15!UBERON:0000179;9.57e-08;15!UBERON:0000463;9.57e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.07e-07,15;UBERON:0000179,1.07e-07,15;UBERON:0000463,1.07e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36881557818649,2.38091709404843,2.83358812729245,0.786728553697808,0,0,0,0,0,0.0774672005803016,0.284338464974843,0,0,0.200544447470142,0.434021741431704,0.223915474239924,0.647787332037959,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590129310341499,0.786021525498329,1.02800749499755,1.17030546773475,0.32592226663359,0.473447805734733,3.89653456815823,1.55974639639243,0.294605907474837,0.221533894583621,0.812411591295047,1.5370958367081,1.8208308658383,1.64437904603676,0.829050053357545,2.31842468588042,1.77943875794473,0.267540828089713,0,1.58633079776593,1.53288197440768,1.37450978193052,2.78321661221453,0.318565414324097,1.30216690771284,0,0.301150238155546,0.76791966692651,1.24930726552346,0.473554504088034,0,0.201606743224732,0.534880391567015,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0,0.616339038092582,0.414656231081544,0.432359860250884,0.50496973370552,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0.112085143993527,0.394061520403854,0.215627574859517,0.513372145118994,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.431428401637234,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52927441428475,0,0.238231775457789,1.23408681925858,0,0.540031437238115,1.58625035258854,0,0,0,0.371606350251437,0.144269212976445,0.213425530045242,0.159426272728822,0,0,0.846694330895531,0,0.280797178113459,0,0.94007937463814,0,0.169291777801603,0.802940375518498,0.403599414382095,0,1.03051603426729,0.307240764308458,0.671028323677248,0.166849141711909,0.586164286206121,0,0,0.540911356951966,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0.281338832821026,0,0,0,0,0.276283915531148,0,0,0.123084805461069,0,0,0.179021174675609,1.53471711068062,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0.32681539055697,0,0,0,0,0.0897576444097721,0,0,0,0,1.02193298195737,0.31396051279005,0.166211681900156,0.225595660617181,0.588187602953219,0.671286347903371,0,0.476809736941136,0,0.163232808159148,0,0,0,0,0,0.889563386041866,1.23563938946503,0.626531697032732,0.134802265961354,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290268993867255,0.219267951258557,0.410577285266046,0,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36598618851383,0,0,0,0,0,0,0,0,0,0.157566364614447,0.247247575143499,0.26961417541674,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0.182248669974074,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0.197611631897944,0.487170393523584,0,0,0,0,0,0,0,0,0.1251909307065,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.138314504928436,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0.576169937778896,0,0.135939465953663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.257831551894309,0.599646935549574,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0,0,0,0,0,0,0.126698501011437,0.203977659483963,0,0,0,0,0.267964130156178,0,0.103432995861895,0,0,0,0.124149428591716,0,0,0,0,0,0.404112318087525,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,1.60284246151616 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| ||
|short_description=p9@TMC6 | |||
}} | }} |
Latest revision as of 20:20, 17 September 2015
Short description: | p9@TMC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_TMC6_5end |
Coexpression cluster: | NA |
Association with transcript: | -349bp_to_uc002juj.1_5end |
EntrezGene: | TMC6 |
HGNC: | 18021 |
UniProt: | Q7Z403 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.95e-12 | 52 |
lymphocyte | 7.18e-12 | 53 |
common lymphoid progenitor | 7.18e-12 | 53 |
T cell | 1.26e-09 | 25 |
pro-T cell | 1.26e-09 | 25 |
CD4-positive, alpha-beta thymocyte | 1.84e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.84e-08 | 1 |
mature CD4 single-positive thymocyte | 1.84e-08 | 1 |
resting double-positive thymocyte | 1.84e-08 | 1 |
double-positive blast | 1.84e-08 | 1 |
CD69-positive double-positive thymocyte | 1.84e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 1.84e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.84e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 1.84e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
blood | 1.07e-07 | 15 |
haemolymphatic fluid | 1.07e-07 | 15 |
organism substance | 1.07e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.18e-08 | 1 |
monogenic disease | 1.18e-08 | 1 |
xeroderma pigmentosum | 1.18e-08 | 1 |