Coexpression cluster:C308: Difference between revisions
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{{Coexpression_clusters | {{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143931545137586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307583768619467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32832365318808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823456809183704,0.288523274754883,0.542256904750742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0267975841371139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|full_id=C308_lung_Hepatocyte_liver_thyroid_heart_left_breast|gostat_on_coexpression_clusters=GO:0001101!response to acid!0.0102944784231565!27159$GO:0010383!cell wall polysaccharide metabolic process!0.0102944784231565!27159$GO:0006037!cell wall chitin metabolic process!0.0102944784231565!27159$GO:0010037!response to carbon dioxide!0.0102944784231565!2$GO:0005615!extracellular space!0.0102944784231565!27159;6439;8547$GO:0045029!UDP-activated nucleotide receptor activity!0.0155385513714468!9934$GO:0019959!interleukin-8 binding!0.0155385513714468!2$GO:0015065!uridine nucleotide receptor activity!0.0155385513714468!9934$GO:0017114!wide-spectrum protease inhibitor activity!0.0155385513714468!2$GO:0050828!regulation of liquid surface tension!0.0209143579160127!6439$GO:0008061!chitin binding!0.0209143579160127!27159$GO:0044421!extracellular region part!0.0209143579160127!27159;6439;8547$GO:0043120!tumor necrosis factor binding!0.0279299039569851!2$GO:0019966!interleukin-1 binding!0.0279299039569851!2$GO:0051384!response to glucocorticoid stimulus!0.0279299039569851!2$GO:0019958!C-X-C chemokine binding!0.0279299039569851!2$GO:0003796!lysozyme activity!0.0279299039569851!27159$GO:0031960!response to corticosteroid stimulus!0.0279299039569851!2$GO:0005529!sugar binding!0.0279299039569851!27159;8547$GO:0006032!chitin catabolic process!0.0279299039569851!27159$GO:0006046!N-acetylglucosamine catabolic process!0.0279299039569851!27159$GO:0006043!glucosamine catabolic process!0.0279299039569851!27159$GO:0046348!amino sugar catabolic process!0.0279299039569851!27159$GO:0006030!chitin metabolic process!0.0279299039569851!27159$GO:0004568!chitinase activity!0.0279299039569851!27159$GO:0009620!response to fungus!0.0325618814526327!27159$GO:0010382!cell wall metabolic process!0.0325618814526327!27159$GO:0007047!cell wall organization and biogenesis!0.0325618814526327!27159$GO:0044247!cellular polysaccharide catabolic process!0.0325618814526327!27159$GO:0000272!polysaccharide catabolic process!0.0325618814526327!27159$GO:0045229!external encapsulating structure organization and biogenesis!0.03300816015487!27159$GO:0030246!carbohydrate binding!0.0366394871563165!27159;8547$GO:0008320!protein transmembrane transporter activity!0.0394364418177486!2$GO:0007585!respiratory gaseous exchange!0.0396389005349773!6439$GO:0006044!N-acetylglucosamine metabolic process!0.0416574366362695!27159$GO:0006041!glucosamine metabolic process!0.0416574366362695!27159$GO:0048545!response to steroid hormone stimulus!0.0416574366362695!2$GO:0042221!response to chemical stimulus!0.0416574366362695!27159;2$GO:0019956!chemokine binding!0.0416574366362695!2$GO:0019965!interleukin binding!0.0416574366362695!2$GO:0006040!amino sugar metabolic process!0.0416574366362695!27159$GO:0051260!protein homooligomerization!0.0416574366362695!2$GO:0007584!response to nutrient!0.0416574366362695!2$GO:0010035!response to inorganic substance!0.0416574366362695!2$GO:0045028!purinergic nucleotide receptor activity, G-protein coupled!0.0416574366362695!9934$GO:0001608!nucleotide receptor activity, G-protein coupled!0.0416574366362695!9934$GO:0009605!response to external stimulus!0.0416574366362695!177;2$GO:0016502!nucleotide receptor activity!0.0416574366362695!9934$GO:0001614!purinergic nucleotide receptor 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892691,0.92136,0.807194,0.564991,0.840666,0.663758,0.353361,0.783571,0.933462,0.970023,0.884502,0.79814,0.619591,0.840672,0.79654,0.772235,0.761205,0.928189,0.806228,0.887324,0.903535,0.963159,0.721197,0.587144,0.844566,0.805009,0.730247,0.325773,0.728433,0.442956,0.390331,0.778125,0.616708,0.776464,0.402786,0.232417,0.919183,0.651355,0.957515,0.729228,0.950113,0.979948|tfbs_overrepresentation_for_novel_motifs=0.105186,0.118821,0.0230569,0.236097,0.184223,0.23426,0.0986544,1.49105,1.14315,0.0762605,0.201596,0.120169,0.00812929,0.0932869,0.597213,1.81284,0.227456,0.947923,0.176947,0.401914,0.245526,0.50361,0.0629663,1.22499,0.320763,0.132202,0.336628,0.223303,0.368776,0.602389,0.179289,0.703708,0.0835775,0.622421,0.139788,0.206628,0.00982223,0.870796,0.914299,0.750763,0.28228,0.0423329,0.974403,0.88791,0.480231,0.0301563,0.0991704,0.743826,0.872777,0.915671,0.139988,0.104833,0.941161,0.308256,0.428303,0.0946422,0.935089,0.0800554,1.3333,0.0796258,0.281871,0.100296,1.14679,0.601573,0.715752,0.187096,0.502307,0.834098,0.245481,0.684258,0.038443,0.14128,0.00549875,1.09169,0.0272645,0.121343,1.11674,0.575544,0.243236,0.895683,0.0947596,0.20839,0.352292,0.257386,0.385048,2.30075e-05,0.103998,1.28344,0.154748,0.927861,0.583373,0.363684,0.730982,0.558581,0.0153306,0.220227,1.19572,0.295343,1.48209,0.0634941,0.234239,0.260534,0.291245,0.229928,0.531603,0.0532312,0.21932,0.0917054,0.0339777,0.0611797,0.108159,0.289219,1.06978,0.0581562,0.541356,0.134126,0.00327021,0.0470551,0.185636,0.201231,1.07698,0.909353,0.858799,0.367143,0.639136,0.576709,1.08766,0.268089,0.45505,1.97078,0.364226,1.10786,0.467073,0.733045,0.594755,0.37041,2.02163,0.0623645,0.557426,1.36861,0.977798,1.30276,0.0964808,0.29275,0.181034,0.264331,0.170865,1.21274,0.160261,0.190291,0.458355,0.000663062,0.364525,0.0498676,0.328942,0.712168,0.446536,0.329911,0.0340611,0.0268425,0.523979,0.350068,0.242693,0.515263,1.67614,0.713157,0.310071,0.0980259,0.00556056|tfbs_overrepresentation_jaspar=MA0003.1;4.20904e-06,MA0004.1;0.45503,MA0006.1;0.0696281,MA0007.1;0.418327,MA0009.1;1.58829,MA0014.1;2.22494e-05,MA0017.1;0.096641,MA0019.1;0.388744,MA0024.1;0.254518,MA0025.1;0.439186,MA0027.1;1.8466,MA0028.1;0.017688,MA0029.1;0.268301,MA0030.1;0.260095,MA0031.1;0.215562,MA0038.1;0.0999782,MA0040.1;0.272523,MA0041.1;0.227378,MA0042.1;0.428611,MA0043.1;0.332327,MA0046.1;2.36713,MA0048.1;0.0969338,MA0050.1;0.19388,MA0051.1;0.32328,MA0052.1;0.275327,MA0055.1;0.232674,MA0056.1;0,MA0057.1;0.527353,MA0058.1;0.279956,MA0059.1;0.823005,MA0060.1;0.00279011,MA0061.1;0.0923999,MA0063.1;0,MA0066.1;0.674802,MA0067.1;0.597968,MA0068.1;1.47322,MA0069.1;0.320777,MA0070.1;0.312273,MA0071.1;0.588101,MA0072.1;0.308875,MA0073.1;0.115655,MA0074.1;1.10102,MA0076.1;0.031919,MA0077.1;0.818719,MA0078.1;0.150427,MA0081.1;0.115503,MA0083.1;0.337888,MA0084.1;0.768496,MA0087.1;0.82764,MA0088.1;1.18096,MA0089.1;0,MA0090.1;0.332189,MA0091.1;0.799469,MA0092.1;0.386895,MA0093.1;0.606071,MA0095.1;0,MA0098.1;0,MA0100.1;0.106764,MA0101.1;0.190552,MA0103.1;0.564235,MA0105.1;0.0317322,MA0106.1;0.383434,MA0107.1;0.100362,MA0108.2;0.612085,MA0109.1;0,MA0111.1;0.640029,MA0113.1;0.406016,MA0114.1;0.205078,MA0115.1;0.530757,MA0116.1;0.88521,MA0117.1;0.36143,MA0119.1;1.11533,MA0122.1;0.382044,MA0124.1;1.23873,MA0125.1;0.42437,MA0130.1;0,MA0131.1;0.161082,MA0132.1;0,MA0133.1;0,MA0135.1;0.355725,MA0136.1;0.68982,MA0139.1;0.00855844,MA0140.1;0.276985,MA0141.1;0.0271979,MA0142.1;0.194761,MA0143.1;0.129619,MA0144.1;0.179407,MA0145.1;0.395589,MA0146.1;0.164987,MA0147.1;0.227969,MA0148.1;0.0660128,MA0149.1;1.42262,MA0062.2;0.00144723,MA0035.2;0.0807052,MA0039.2;0.0305413,MA0138.2;0.460666,MA0002.2;1.36777,MA0137.2;0.411378,MA0104.2;0.12844,MA0047.2;0.114453,MA0112.2;1.25197,MA0065.2;0.291904,MA0150.1;0.0342009,MA0151.1;0,MA0152.1;0.5966,MA0153.1;1.86059,MA0154.1;0.987789,MA0155.1;0.219362,MA0156.1;0.416987,MA0157.1;0.525632,MA0158.1;0,MA0159.1;0.630496,MA0160.1;0.537314,MA0161.1;0,MA0162.1;0.00057372,MA0163.1;0.430142,MA0164.1;0.837054,MA0080.2;0.606368,MA0018.2;0.121488,MA0099.2;0.0840507,MA0079.2;0.0078603,MA0102.2;0.803155,MA0258.1;0.484448,MA0259.1;0.116854,MA0442.1;0}} 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Latest revision as of 11:19, 17 September 2013
Full id: C308_lung_Hepatocyte_liver_thyroid_heart_left_breast
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0001101 | response to acid | 0.0102944784231565 |
GO:0010383 | cell wall polysaccharide metabolic process | 0.0102944784231565 |
GO:0006037 | cell wall chitin metabolic process | 0.0102944784231565 |
GO:0010037 | response to carbon dioxide | 0.0102944784231565 |
GO:0005615 | extracellular space | 0.0102944784231565 |
GO:0045029 | UDP-activated nucleotide receptor activity | 0.0155385513714468 |
GO:0019959 | interleukin-8 binding | 0.0155385513714468 |
GO:0015065 | uridine nucleotide receptor activity | 0.0155385513714468 |
GO:0017114 | wide-spectrum protease inhibitor activity | 0.0155385513714468 |
GO:0050828 | regulation of liquid surface tension | 0.0209143579160127 |
GO:0008061 | chitin binding | 0.0209143579160127 |
GO:0044421 | extracellular region part | 0.0209143579160127 |
GO:0043120 | tumor necrosis factor binding | 0.0279299039569851 |
GO:0019966 | interleukin-1 binding | 0.0279299039569851 |
GO:0051384 | response to glucocorticoid stimulus | 0.0279299039569851 |
GO:0019958 | C-X-C chemokine binding | 0.0279299039569851 |
GO:0003796 | lysozyme activity | 0.0279299039569851 |
GO:0031960 | response to corticosteroid stimulus | 0.0279299039569851 |
GO:0005529 | sugar binding | 0.0279299039569851 |
GO:0006032 | chitin catabolic process | 0.0279299039569851 |
GO:0006046 | N-acetylglucosamine catabolic process | 0.0279299039569851 |
GO:0006043 | glucosamine catabolic process | 0.0279299039569851 |
GO:0046348 | amino sugar catabolic process | 0.0279299039569851 |
GO:0006030 | chitin metabolic process | 0.0279299039569851 |
GO:0004568 | chitinase activity | 0.0279299039569851 |
GO:0009620 | response to fungus | 0.0325618814526327 |
GO:0010382 | cell wall metabolic process | 0.0325618814526327 |
GO:0007047 | cell wall organization and biogenesis | 0.0325618814526327 |
GO:0044247 | cellular polysaccharide catabolic process | 0.0325618814526327 |
GO:0000272 | polysaccharide catabolic process | 0.0325618814526327 |
GO:0045229 | external encapsulating structure organization and biogenesis | 0.03300816015487 |
GO:0030246 | carbohydrate binding | 0.0366394871563165 |
GO:0008320 | protein transmembrane transporter activity | 0.0394364418177486 |
GO:0007585 | respiratory gaseous exchange | 0.0396389005349773 |
GO:0006044 | N-acetylglucosamine metabolic process | 0.0416574366362695 |
GO:0006041 | glucosamine metabolic process | 0.0416574366362695 |
GO:0048545 | response to steroid hormone stimulus | 0.0416574366362695 |
GO:0042221 | response to chemical stimulus | 0.0416574366362695 |
GO:0019956 | chemokine binding | 0.0416574366362695 |
GO:0019965 | interleukin binding | 0.0416574366362695 |
GO:0006040 | amino sugar metabolic process | 0.0416574366362695 |
GO:0051260 | protein homooligomerization | 0.0416574366362695 |
GO:0007584 | response to nutrient | 0.0416574366362695 |
GO:0010035 | response to inorganic substance | 0.0416574366362695 |
GO:0045028 | purinergic nucleotide receptor activity, G-protein coupled | 0.0416574366362695 |
GO:0001608 | nucleotide receptor activity, G-protein coupled | 0.0416574366362695 |
GO:0009605 | response to external stimulus | 0.0416574366362695 |
GO:0016502 | nucleotide receptor activity | 0.0416574366362695 |
GO:0001614 | purinergic nucleotide receptor activity | 0.0416574366362695 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 9.99e-30 | 1 |
right lung lobe | 9.99e-30 | 1 |
lower lobe of lung | 9.99e-30 | 1 |
lobe of lung | 9.99e-30 | 1 |
right lung | 9.99e-30 | 1 |
lung | 2.26e-12 | 22 |
respiratory tube | 2.26e-12 | 22 |
respiration organ | 2.26e-12 | 22 |
pair of lungs | 2.26e-12 | 22 |
lung primordium | 2.26e-12 | 22 |
lung bud | 2.26e-12 | 22 |
thoracic cavity element | 3.01e-08 | 34 |
thoracic cavity | 3.01e-08 | 34 |
thoracic segment organ | 4.96e-08 | 35 |
epithelial bud | 1.25e-07 | 37 |
respiratory primordium | 1.90e-07 | 38 |
endoderm of foregut | 1.90e-07 | 38 |
thyroid gland | 6.77e-07 | 5 |
pharyngeal pouch | 6.77e-07 | 5 |
thyroid diverticulum | 6.77e-07 | 5 |
pharyngeal pouch 2 | 6.77e-07 | 5 |
thyroid primordium | 6.77e-07 | 5 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 4.20904e-06 |
MA0004.1 | 0.45503 |
MA0006.1 | 0.0696281 |
MA0007.1 | 0.418327 |
MA0009.1 | 1.58829 |
MA0014.1 | 2.22494e-05 |
MA0017.1 | 0.096641 |
MA0019.1 | 0.388744 |
MA0024.1 | 0.254518 |
MA0025.1 | 0.439186 |
MA0027.1 | 1.8466 |
MA0028.1 | 0.017688 |
MA0029.1 | 0.268301 |
MA0030.1 | 0.260095 |
MA0031.1 | 0.215562 |
MA0038.1 | 0.0999782 |
MA0040.1 | 0.272523 |
MA0041.1 | 0.227378 |
MA0042.1 | 0.428611 |
MA0043.1 | 0.332327 |
MA0046.1 | 2.36713 |
MA0048.1 | 0.0969338 |
MA0050.1 | 0.19388 |
MA0051.1 | 0.32328 |
MA0052.1 | 0.275327 |
MA0055.1 | 0.232674 |
MA0056.1 | 0 |
MA0057.1 | 0.527353 |
MA0058.1 | 0.279956 |
MA0059.1 | 0.823005 |
MA0060.1 | 0.00279011 |
MA0061.1 | 0.0923999 |
MA0063.1 | 0 |
MA0066.1 | 0.674802 |
MA0067.1 | 0.597968 |
MA0068.1 | 1.47322 |
MA0069.1 | 0.320777 |
MA0070.1 | 0.312273 |
MA0071.1 | 0.588101 |
MA0072.1 | 0.308875 |
MA0073.1 | 0.115655 |
MA0074.1 | 1.10102 |
MA0076.1 | 0.031919 |
MA0077.1 | 0.818719 |
MA0078.1 | 0.150427 |
MA0081.1 | 0.115503 |
MA0083.1 | 0.337888 |
MA0084.1 | 0.768496 |
MA0087.1 | 0.82764 |
MA0088.1 | 1.18096 |
MA0089.1 | 0 |
MA0090.1 | 0.332189 |
MA0091.1 | 0.799469 |
MA0092.1 | 0.386895 |
MA0093.1 | 0.606071 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.106764 |
MA0101.1 | 0.190552 |
MA0103.1 | 0.564235 |
MA0105.1 | 0.0317322 |
MA0106.1 | 0.383434 |
MA0107.1 | 0.100362 |
MA0108.2 | 0.612085 |
MA0109.1 | 0 |
MA0111.1 | 0.640029 |
MA0113.1 | 0.406016 |
MA0114.1 | 0.205078 |
MA0115.1 | 0.530757 |
MA0116.1 | 0.88521 |
MA0117.1 | 0.36143 |
MA0119.1 | 1.11533 |
MA0122.1 | 0.382044 |
MA0124.1 | 1.23873 |
MA0125.1 | 0.42437 |
MA0130.1 | 0 |
MA0131.1 | 0.161082 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.355725 |
MA0136.1 | 0.68982 |
MA0139.1 | 0.00855844 |
MA0140.1 | 0.276985 |
MA0141.1 | 0.0271979 |
MA0142.1 | 0.194761 |
MA0143.1 | 0.129619 |
MA0144.1 | 0.179407 |
MA0145.1 | 0.395589 |
MA0146.1 | 0.164987 |
MA0147.1 | 0.227969 |
MA0148.1 | 0.0660128 |
MA0149.1 | 1.42262 |
MA0062.2 | 0.00144723 |
MA0035.2 | 0.0807052 |
MA0039.2 | 0.0305413 |
MA0138.2 | 0.460666 |
MA0002.2 | 1.36777 |
MA0137.2 | 0.411378 |
MA0104.2 | 0.12844 |
MA0047.2 | 0.114453 |
MA0112.2 | 1.25197 |
MA0065.2 | 0.291904 |
MA0150.1 | 0.0342009 |
MA0151.1 | 0 |
MA0152.1 | 0.5966 |
MA0153.1 | 1.86059 |
MA0154.1 | 0.987789 |
MA0155.1 | 0.219362 |
MA0156.1 | 0.416987 |
MA0157.1 | 0.525632 |
MA0158.1 | 0 |
MA0159.1 | 0.630496 |
MA0160.1 | 0.537314 |
MA0161.1 | 0 |
MA0162.1 | 0.00057372 |
MA0163.1 | 0.430142 |
MA0164.1 | 0.837054 |
MA0080.2 | 0.606368 |
MA0018.2 | 0.121488 |
MA0099.2 | 0.0840507 |
MA0079.2 | 0.0078603 |
MA0102.2 | 0.803155 |
MA0258.1 | 0.484448 |
MA0259.1 | 0.116854 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
No analysis results for this cluster
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.