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{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0319790978673642,0.0342676336102362,0,0.713487936549742,0.601813854598727,0.56013078472843,0,0,0,0,0,0.111800154394222,0.815574699308565,0.79249912007153,0.822317351505973,0,0,0,0.157213324654645,0.139210117864267,0.201907078324771,0.419460611453034,0.422371743678085,0.612472717243541,0.555001474312268,0.51071318626227,0.700720838400822,0.830029392320672,0.94180034622413,1.02035523487276,0.328268270574747,0.259765472565373,0.446814783792063,0.864560379448035,0.809949627586127,0.938121548312311,0.220030274432855,0.295471010211663,0.28082659444567,0.651521350765412,0.59983737142536,0.72914499829392,0.545614682599307,0.489386306020099,0.667396332715297,0.466070178262552,0.670503417233038,0.708761660957899,0.266001347845648,0.367509485880848,0.311392129055566,0.223748134119586,0.161526918504429,0.12105112091666,0.195906702716978,0.145455399178477,0.140495295156522,0,0,0,0.154341861042433,0,0,0,0,0.515456810409039,0.441178319094873,0.464096826824654,0.32855802442891,0.580074112711483,0,0.526406127920374,0.574155786915165,0.656511884765834,0.0671402540299821,0.319720094759472,0.289342666169155,0,0.125231147636021,0.338142339257007,0.275572907280555,0.318734188865058,0.0800596021925949,0.143070424715714,0.0601307314342793,0.087368594836922,0,0.302896764055103,0.14979602523437,0.135911751715927,0.0275471292438538,0.518424829513418,0.485971807789317,0.401076103694246,0,0,0,0.0609149782727745,0.0517672906396035,0,0,0,0.781049059914275,0.744017711919828,0.650869283733341,0,0,0,0,0,0,0,0,0,0,0.00693161377382547,0,0,0,0,0,0,0.16937498165142,0.1537473693459,0.13718235424895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365076740692652,0.650973662377307,0,0,0,0.0540033816753664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457269069978374,0.412514219817673,0.479989532694695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847257663430492,0.847422856990977,0.862656556638832,0,0,0,0,0,0,0,0.150577011075896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308316812342537,0.52799782682013,0.396928803964221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0262237991471511,0,0,0,0,0,0,0,0,0,0.0348447873160056,0,0,0,0.0504125515893149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10881367249339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202227296137227,0,0.00632352736210801,0,0,0,0,0,0,0,0,0,0.0151082378311559,0.060819961675157,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0176265583426742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223994502679913,0.521321948041652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0541780982062256,0.0592257279895724,0,0,0,0.0791766844314576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0473659963914933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0261550693490902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|full_id=C151_CD14_Natural_Basophils_CD8_Eosinophils_CD4_Mast|gostat_on_coexpression_clusters=GO:0030229!very-low-density lipoprotein receptor activity!0.0155274932297186!3949$GO:0004883!glucocorticoid receptor activity!0.0155274932297186!2908$GO:0065007!biological regulation!0.0214504329188226!7159;3949;2908;1316;29110$GO:0045192!low-density lipoprotein catabolic process!0.0228181386588504!3949$GO:0004871!signal transducer activity!0.0228181386588504!7159;3949;2908;29110$GO:0060089!molecular transducer activity!0.0228181386588504!7159;3949;2908;29110$GO:0042159!lipoprotein catabolic process!0.0266107250734418!3949$GO:0030299!cholesterol absorption!0.0275930581833342!3949$GO:0044241!lipid digestion!0.0275930581833342!3949$GO:0050892!intestinal absorption!0.0284503157301035!3949$GO:0005041!low-density lipoprotein receptor activity!0.0284503157301035!3949$GO:0030228!lipoprotein receptor activity!0.0284503157301035!3949$GO:0042632!cholesterol homeostasis!0.0286397731579021!3949$GO:0055092!sterol homeostasis!0.0286397731579021!3949$GO:0030169!low-density lipoprotein 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A0114.1;0.71745,MA0115.1;0.196393,MA0116.1;0.177627,MA0117.1;1.06286,MA0119.1;0.129845,MA0122.1;0.689155,MA0124.1;0.512578,MA0125.1;0.127586,MA0130.1;0,MA0131.1;2.0856,MA0132.1;0,MA0133.1;0,MA0135.1;0.299414,MA0136.1;0.330524,MA0139.1;0.580678,MA0140.1;0.123256,MA0141.1;0.0424318,MA0142.1;0.0233704,MA0143.1;0.691952,MA0144.1;1.34098,MA0145.1;0.303342,MA0146.1;0.018574,MA0147.1;0.81454,MA0148.1;0.0875439,MA0149.1;0.00223915,MA0062.2;1.9581,MA0035.2;0.233644,MA0039.2;0.0145705,MA0138.2;0.0126849,MA0002.2;0.336662,MA0137.2;0.86929,MA0104.2;1.57476,MA0047.2;0.0998249,MA0112.2;0.151618,MA0065.2;0.264276,MA0150.1;1.37847,MA0151.1;0,MA0152.1;0.2469,MA0153.1;0.11942,MA0154.1;0.336009,MA0155.1;0.3848,MA0156.1;1.10772,MA0157.1;0.0840139,MA0158.1;0,MA0159.1;0.8198,MA0160.1;0.198584,MA0161.1;0,MA0162.1;1.75925,MA0163.1;0.115134,MA0164.1;0.478712,MA0080.2;0.565373,MA0018.2;5.19609,MA0099.2;4.66513,MA0079.2;0.228847,MA0102.2;0.407764,MA0258.1;0.154529,MA0259.1;0.2124,MA0442.1;0}}
|full_id=C151_CD14_Natural_Basophils_CD8_Eosinophils_CD4_Mast
|gostat_on_coexpression_clusters=GO:0030229!very-low-density lipoprotein receptor activity!0.0155274932297186!3949$GO:0004883!glucocorticoid receptor activity!0.0155274932297186!2908$GO:0065007!biological regulation!0.0214504329188226!7159;3949;2908;1316;29110$GO:0045192!low-density lipoprotein catabolic process!0.0228181386588504!3949$GO:0004871!signal transducer activity!0.0228181386588504!7159;3949;2908;29110$GO:0060089!molecular transducer activity!0.0228181386588504!7159;3949;2908;29110$GO:0042159!lipoprotein catabolic process!0.0266107250734418!3949$GO:0030299!cholesterol absorption!0.0275930581833342!3949$GO:0044241!lipid digestion!0.0275930581833342!3949$GO:0050892!intestinal absorption!0.0284503157301035!3949$GO:0005041!low-density lipoprotein receptor activity!0.0284503157301035!3949$GO:0030228!lipoprotein receptor activity!0.0284503157301035!3949$GO:0042632!cholesterol homeostasis!0.0286397731579021!3949$GO:0055092!sterol homeostasis!0.0286397731579021!3949$GO:0030169!low-density lipoprotein binding!0.0286397731579021!3949$GO:0055088!lipid homeostasis!0.0286397731579021!3949$GO:0015918!sterol transport!0.0286397731579021!3949$GO:0051059!NF-kappaB binding!0.0286397731579021!7159$GO:0030301!cholesterol transport!0.0286397731579021!3949$GO:0022600!digestive system process!0.0286397731579021!3949$GO:0006952!defense response!0.0286397731579021!2908;29110$GO:0007530!sex determination!0.0296085113281691!2908$GO:0050794!regulation of cellular process!0.0315335977428127!7159;2908;1316;29110$GO:0030183!B cell differentiation!0.0356404869340457!1316$GO:0008034!lipoprotein binding!0.0356404869340457!3949$GO:0006493!protein amino acid O-linked glycosylation!0.0356404869340457!3949$GO:0050789!regulation of biological process!0.0356404869340457!7159;2908;1316;29110$GO:0005905!coated pit!0.0475738017393153!3949
|id=C151
|ontology_enrichment_celltype=CL:0000738!1.54e-50!140;CL:0000037!3.06e-42!172;CL:0000566!3.06e-42!172;CL:0000988!7.53e-41!182;CL:0002031!8.42e-41!124;CL:0002087!6.90e-39!119;CL:0002032!1.70e-38!165;CL:0000837!1.70e-38!165;CL:0002057!8.54e-26!42;CL:0000766!1.66e-25!76;CL:0000860!4.28e-25!45;CL:0000557!1.73e-22!71;CL:0000839!7.19e-21!70;CL:0000763!6.72e-20!112;CL:0000049!6.72e-20!112;CL:0002009!8.90e-20!65;CL:0002194!9.61e-19!63;CL:0000576!9.61e-19!63;CL:0000040!9.61e-19!63;CL:0000559!9.61e-19!63;CL:0000838!5.51e-18!52;CL:0000542!7.62e-18!53;CL:0000051!7.62e-18!53;CL:0000134!1.41e-13!358;CL:0002320!4.13e-13!365;CL:0000219!1.08e-10!390;CL:0000791!6.81e-10!18;CL:0000789!6.81e-10!18;CL:0002420!6.81e-10!18;CL:0002419!6.81e-10!18;CL:0000790!6.81e-10!18;CL:0000048!4.35e-09!430;CL:0000945!7.74e-09!24;CL:0000826!7.74e-09!24;CL:0000084!1.30e-08!25;CL:0000827!1.30e-08!25;CL:0000034!1.47e-08!444;CL:0000723!2.27e-08!436;CL:0000236!5.90e-07!14
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!2.76e-26!102;UBERON:0003061!2.76e-26!102;UBERON:0002193!8.80e-23!112;UBERON:0002371!1.43e-21!80;UBERON:0001474!5.98e-20!86;UBERON:0002405!7.76e-16!115;UBERON:0004765!3.51e-13!101;UBERON:0001434!3.51e-13!101;UBERON:0002384!8.80e-12!375;UBERON:0003081!1.37e-07!216
}}

Latest revision as of 10:43, 17 September 2013


Full id: C151_CD14_Natural_Basophils_CD8_Eosinophils_CD4_Mast



Phase1 CAGE Peaks

Hg19::chr10:17553392..17553414,-p@chr10:17553392..17553414
-
Hg19::chr10:17553468..17553477,-p@chr10:17553468..17553477
-
Hg19::chr10:3799978..3799981,+p@chr10:3799978..3799981
+
Hg19::chr10:3825575..3825583,-p@chr10:3825575..3825583
-
Hg19::chr10:3825586..3825604,+p@chr10:3825586..3825604
+
Hg19::chr10:3825673..3825701,+p@chr10:3825673..3825701
+
Hg19::chr10:3827371..3827386,-p2@KLF6
Hg19::chr10:3847590..3847615,+p@chr10:3847590..3847615
+
Hg19::chr10:3847617..3847639,+p@chr10:3847617..3847639
+
Hg19::chr10:3894565..3894585,-p@chr10:3894565..3894585
-
Hg19::chr10:3894940..3894969,+p@chr10:3894940..3894969
+
Hg19::chr10:3930116..3930153,-p@chr10:3930116..3930153
-
Hg19::chr10:3930230..3930262,+p@chr10:3930230..3930262
+
Hg19::chr10:99408822..99408843,-p@chr10:99408822..99408843
-
Hg19::chr11:108338193..108338213,-p2@C11orf65
Hg19::chr11:58341454..58341467,+p@chr11:58341454..58341467
+
Hg19::chr11:9482158..9482185,-p1@LOC644656
Hg19::chr12:47785018..47785030,+p@chr12:47785018..47785030
+
Hg19::chr12:62997510..62997571,-p1@C12orf61
Hg19::chr12:64616313..64616329,-p2@C12orf66
Hg19::chr12:64845781..64845792,+p5@TBK1
Hg19::chr12:92270910..92270924,-p@chr12:92270910..92270924
-
Hg19::chr12:96793507..96793519,+p@chr12:96793507..96793519
+
Hg19::chr13:114894670..114894687,+p@chr13:114894670..114894687
+
Hg19::chr13:52378012..52378023,+p5@ENST00000456688
Hg19::chr13:52378405..52378429,+p3@ENST00000456688
Hg19::chr13:71865578..71865595,+p@chr13:71865578..71865595
+
Hg19::chr13:99935844..99935865,-p@chr13:99935844..99935865
-
Hg19::chr14:102414353..102414415,-p@chr14:102414353..102414415
-
Hg19::chr14:23790136..23790163,-p@chr14:23790136..23790163
-
Hg19::chr14:81636804..81636835,+p@chr14:81636804..81636835
+
Hg19::chr14:81685834..81685853,+p@chr14:81685834..81685853
+
Hg19::chr15:85525866..85525879,-p@chr15:85525866..85525879
-
Hg19::chr16:20912122..20912137,-p3@DCUN1D3
Hg19::chr17:26926162..26926194,+p1@SPAG5-AS1
Hg19::chr17:33569446..33569460,+p@chr17:33569446..33569460
+
Hg19::chr17:33570565..33570588,-p@chr17:33570565..33570588
-
Hg19::chr17:38255699..38255715,+p@chr17:38255699..38255715
+
Hg19::chr17:38476516..38476528,-p@chr17:38476516..38476528
-
Hg19::chr17:38477491..38477543,-p@chr17:38477491..38477543
-
Hg19::chr18:11851262..11851282,-p@chr18:11851262..11851282
-
Hg19::chr18:3448924..3448950,-p@chr18:3448924..3448950
-
Hg19::chr18:60829037..60829058,-p@chr18:60829037..60829058
-
Hg19::chr18:711915..711927,+p@chr18:711915..711927
+
Hg19::chr19:11201287..11201316,+p9@LDLR
Hg19::chr19:14480830..14480845,+p@chr19:14480830..14480845
+
Hg19::chr19:2504035..2504041,+p@chr19:2504035..2504041
+
Hg19::chr19:45959099..45959131,-p@chr19:45959099..45959131
-
Hg19::chr1:171455486..171455504,+p@chr1:171455486..171455504
+
Hg19::chr1:184942941..184942967,-p@chr1:184942941..184942967
-
Hg19::chr1:206753511..206753542,+p@chr1:206753511..206753542
+
Hg19::chr1:221885672..221885702,-p@chr1:221885672..221885702
-
Hg19::chr1:221915746..221915770,+p@chr1:221915746..221915770
+
Hg19::chr1:221916350..221916370,+p@chr1:221916350..221916370
+
Hg19::chr1:221916408..221916416,+p@chr1:221916408..221916416
+
Hg19::chr1:224033536..224033567,-p4@TP53BP2
Hg19::chr1:226867811..226867833,-p@chr1:226867811..226867833
-
Hg19::chr1:226891331..226891354,+p@chr1:226891331..226891354
+
Hg19::chr1:226891361..226891380,+p@chr1:226891361..226891380
+
Hg19::chr1:234746616..234746632,-p@chr1:234746616..234746632
-
Hg19::chr1:24286129..24286138,-p@chr1:24286129..24286138
-
Hg19::chr1:37944377..37944382,-p@chr1:37944377..37944382
-
Hg19::chr1:59249927..59249963,+p@chr1:59249927..59249963
+
Hg19::chr22:36782241..36782263,+p@chr22:36782241..36782263
+
Hg19::chr22:42929620..42929624,+p@chr22:42929620..42929624
+
Hg19::chr2:135810133..135810145,-p@chr2:135810133..135810145
-
Hg19::chr2:178077129..178077179,-p@chr2:178077129..178077179
-
Hg19::chr2:178129611..178129638,+p@chr2:178129611..178129638
+
Hg19::chr2:178129685..178129703,+p@chr2:178129685..178129703
+
Hg19::chr2:191979419..191979439,+p@chr2:191979419..191979439
+
Hg19::chr2:192015854..192015875,+p@chr2:192015854..192015875
+
Hg19::chr2:232258341..232258363,-p@chr2:232258341..232258363
-
Hg19::chr2:241564662..241564674,-p@chr2:241564662..241564674
-
Hg19::chr2:48133949..48133962,+p2@ENST00000417692
Hg19::chr2:61991361..61991380,-p@chr2:61991361..61991380
-
Hg19::chr2:61991387..61991406,-p@chr2:61991387..61991406
-
Hg19::chr2:70370094..70370116,+p@chr2:70370094..70370116
+
Hg19::chr2:88927395..88927420,+p2@uc002std.1
Hg19::chr2:88927653..88927687,-p@chr2:88927653..88927687
-
Hg19::chr3:11331017..11331048,+p@chr3:11331017..11331048
+
Hg19::chr3:113933266..113933281,+p2@ENST00000493033
p2@uc003ebe.1
Hg19::chr3:5026037..5026052,+p@chr3:5026037..5026052
+
Hg19::chr3:5048654..5048681,+p@chr3:5048654..5048681
+
Hg19::chr4:103436594..103436605,+p@chr4:103436594..103436605
+
Hg19::chr4:139936151..139936155,-p@chr4:139936151..139936155
-
Hg19::chr4:139938135..139938140,+p@chr4:139938135..139938140
+
Hg19::chr4:170541477..170541493,-p@chr4:170541477..170541493
-
Hg19::chr4:2748210..2748233,+p@chr4:2748210..2748233
+
Hg19::chr5:142784911..142784925,-p15@NR3C1
Hg19::chr5:1521157..1521164,+p@chr5:1521157..1521164
+
Hg19::chr5:75843262..75843275,-p@chr5:75843262..75843275
-
Hg19::chr6:138028841..138028852,-p@chr6:138028841..138028852
-
Hg19::chr6:28105422..28105451,-p1@uc003nkl.1
p1@uc010jqw.1
p2@uc003nkk.1
Hg19::chr6:29617855..29617871,-p@chr6:29617855..29617871
-
Hg19::chr6:33281942..33281963,+p@chr6:33281942..33281963
+
Hg19::chr6:33386279..33386304,+p@chr6:33386279..33386304
+
Hg19::chr7:12727041..12727066,-p@chr7:12727041..12727066
-
Hg19::chr7:130626444..130626463,+p@chr7:130626444..130626463
+
Hg19::chr7:151722642..151722676,-p@chr7:151722642..151722676
-
Hg19::chr7:30634289..30634301,-p@chr7:30634289..30634301
-
Hg19::chr7:44673697..44673718,+p@chr7:44673697..44673718
+
Hg19::chr7:44925415..44925438,+p@chr7:44925415..44925438
+
Hg19::chr7:66093620..66093638,-p@chr7:66093620..66093638
-
Hg19::chr8:101964395..101964441,+p@chr8:101964395..101964441
+
Hg19::chr8:141475127..141475140,+p@chr8:141475127..141475140
+
Hg19::chr8:141601516..141601544,-p@chr8:141601516..141601544
-
Hg19::chr9:132891288..132891326,-p@chr9:132891288..132891326
-
Hg19::chr9:135991340..135991361,+p@chr9:135991340..135991361
+
Hg19::chr9:26892877..26892898,+p@chr9:26892877..26892898
+
Hg19::chr9:34989341..34989353,-p@chr9:34989341..34989353
-
Hg19::chr9:91933623..91933645,-p@chr9:91933623..91933645
-
Hg19::chr9:99417081..99417092,+p@chr9:99417081..99417092
+
Hg19::chrX:70752106..70752119,+p@chrX:70752106..70752119
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030229very-low-density lipoprotein receptor activity0.0155274932297186
GO:0004883glucocorticoid receptor activity0.0155274932297186
GO:0065007biological regulation0.0214504329188226
GO:0045192low-density lipoprotein catabolic process0.0228181386588504
GO:0004871signal transducer activity0.0228181386588504
GO:0060089molecular transducer activity0.0228181386588504
GO:0042159lipoprotein catabolic process0.0266107250734418
GO:0030299cholesterol absorption0.0275930581833342
GO:0044241lipid digestion0.0275930581833342
GO:0050892intestinal absorption0.0284503157301035
GO:0005041low-density lipoprotein receptor activity0.0284503157301035
GO:0030228lipoprotein receptor activity0.0284503157301035
GO:0042632cholesterol homeostasis0.0286397731579021
GO:0055092sterol homeostasis0.0286397731579021
GO:0030169low-density lipoprotein binding0.0286397731579021
GO:0055088lipid homeostasis0.0286397731579021
GO:0015918sterol transport0.0286397731579021
GO:0051059NF-kappaB binding0.0286397731579021
GO:0030301cholesterol transport0.0286397731579021
GO:0022600digestive system process0.0286397731579021
GO:0006952defense response0.0286397731579021
GO:0007530sex determination0.0296085113281691
GO:0050794regulation of cellular process0.0315335977428127
GO:0030183B cell differentiation0.0356404869340457
GO:0008034lipoprotein binding0.0356404869340457
GO:0006493protein amino acid O-linked glycosylation0.0356404869340457
GO:0050789regulation of biological process0.0356404869340457
GO:0005905coated pit0.0475738017393153



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
leukocyte6.69e-85136
classical monocyte5.77e-7342
CD14-positive, CD16-negative classical monocyte5.77e-7342
hematopoietic lineage restricted progenitor cell2.11e-67120
nongranular leukocyte1.38e-66115
hematopoietic stem cell4.36e-66168
angioblastic mesenchymal cell4.36e-66168
hematopoietic cell6.54e-65177
defensive cell4.40e-6248
phagocyte4.40e-6248
myeloid leukocyte9.83e-6072
hematopoietic oligopotent progenitor cell9.81e-59161
hematopoietic multipotent progenitor cell9.81e-59161
granulocyte monocyte progenitor cell4.74e-5467
macrophage dendritic cell progenitor1.99e-5261
myeloid lineage restricted progenitor cell5.49e-5066
monopoietic cell2.52e-4959
monocyte2.52e-4959
monoblast2.52e-4959
promonocyte2.52e-4959
myeloid cell3.81e-41108
common myeloid progenitor3.81e-41108
stuff accumulating cell3.63e-2887
mesenchymal cell1.06e-20354
connective tissue cell7.44e-20361
motile cell7.01e-17386
intermediate monocyte5.07e-169
CD14-positive, CD16-positive monocyte5.07e-169
lymphoid lineage restricted progenitor cell1.91e-1552
lymphocyte5.10e-1553
common lymphoid progenitor5.10e-1553
nucleate cell3.24e-1455
stem cell1.89e-13441
multi fate stem cell2.79e-13427
somatic stem cell8.68e-13433
CD4-positive, alpha-beta T cell8.96e-126
T cell2.37e-1125
pro-T cell2.37e-1125
mature alpha-beta T cell5.84e-1118
alpha-beta T cell5.84e-1118
immature T cell5.84e-1118
mature T cell5.84e-1118
immature alpha-beta T cell5.84e-1118
granulocyte1.29e-088
blood cell6.15e-0811
natural killer cell1.50e-073
pro-NK cell1.50e-073
circulating cell1.97e-076
basophil4.47e-073
dendritic cell7.89e-0710
Uber Anatomy
Ontology termp-valuen
bone marrow5.36e-4876
hematopoietic system1.95e-4698
blood island1.95e-4698
bone element2.13e-4382
hemolymphoid system1.36e-40108
immune system4.66e-4093
skeletal element3.18e-3890
skeletal system6.29e-33100
connective tissue1.06e-18371
lateral plate mesoderm1.26e-15203
musculoskeletal system4.34e-14167


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10.989889
MA0004.11.33364
MA0006.10.717702
MA0007.10.500564
MA0009.10.266312
MA0014.11.20985
MA0017.10.989077
MA0019.10.113218
MA0024.10.673425
MA0025.10.837936
MA0027.11.39047
MA0028.10.637437
MA0029.10.409832
MA0030.10.0454061
MA0031.10.122191
MA0038.10.745454
MA0040.10.0503624
MA0041.10.00920775
MA0042.10.0217917
MA0043.10.955062
MA0046.10.25487
MA0048.10.121302
MA0050.11.24613
MA0051.10.728865
MA0052.10.426236
MA0055.10.00500192
MA0056.10
MA0057.10.392548
MA0058.12.40663
MA0059.10.930199
MA0060.12.91677
MA0061.14.12111
MA0063.10
MA0066.10.747138
MA0067.11.26957
MA0068.10.00885627
MA0069.10.535343
MA0070.10.88146
MA0071.10.126163
MA0072.10.506305
MA0073.11.36654e-06
MA0074.10.0746432
MA0076.10.441956
MA0077.10.227257
MA0078.11.15516
MA0081.10.157852
MA0083.13.27924
MA0084.10.378801
MA0087.10.065308
MA0088.10.0687404
MA0089.10
MA0090.10.129889
MA0091.10.250819
MA0092.10.441716
MA0093.12.59432
MA0095.10
MA0098.10
MA0100.10.0880196
MA0101.15.03151
MA0103.10.0570782
MA0105.11.01732
MA0106.10.109879
MA0107.15.29422
MA0108.20.120014
MA0109.10
MA0111.10.386756
MA0113.10.124373
MA0114.10.71745
MA0115.10.196393
MA0116.10.177627
MA0117.11.06286
MA0119.10.129845
MA0122.10.689155
MA0124.10.512578
MA0125.10.127586
MA0130.10
MA0131.12.0856
MA0132.10
MA0133.10
MA0135.10.299414
MA0136.10.330524
MA0139.10.580678
MA0140.10.123256
MA0141.10.0424318
MA0142.10.0233704
MA0143.10.691952
MA0144.11.34098
MA0145.10.303342
MA0146.10.018574
MA0147.10.81454
MA0148.10.0875439
MA0149.10.00223915
MA0062.21.9581
MA0035.20.233644
MA0039.20.0145705
MA0138.20.0126849
MA0002.20.336662
MA0137.20.86929
MA0104.21.57476
MA0047.20.0998249
MA0112.20.151618
MA0065.20.264276
MA0150.11.37847
MA0151.10
MA0152.10.2469
MA0153.10.11942
MA0154.10.336009
MA0155.10.3848
MA0156.11.10772
MA0157.10.0840139
MA0158.10
MA0159.10.8198
MA0160.10.198584
MA0161.10
MA0162.11.75925
MA0163.10.115134
MA0164.10.478712
MA0080.20.565373
MA0018.25.19609
MA0099.24.66513
MA0079.20.228847
MA0102.20.407764
MA0258.10.154529
MA0259.10.2124
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
ATF3#467254.969728877435572.66467314316163e-113.13396169367857e-09
BATF#10538306.46667304220451.78853175422964e-163.55118760228117e-14
BCL11A#53335225.5232567458356.95516102941178e-117.6704336087723e-09
BCL3#602103.05726573484410.001698830845581860.0106133992152733
BCLAF1#9774122.299396206384620.006123377207064820.0270868018690658
BRCA1#672234.108294732691567.05821815684309e-095.48885514581188e-07
CCNT2#905402.242903213084122.72979303212699e-071.40303570119247e-05
CEBPB#1051402.821645177283123.93737605036592e-103.88672606166509e-08
CHD2#1106272.471580677178367.91815342052214e-060.000223443400455529
CTCF#10664341.612820501633190.002234365881386610.0128343932618048
E2F1#1869482.08455471074528.25544338046805e-084.92117723294921e-06
E2F4#1874283.138988396707654.17937700915703e-082.75214347704509e-06
E2F6#1876492.175580804010371.31376188976336e-089.67616205959067e-07
EBF1#1879413.231549917781672.95693619281385e-123.93400584765969e-10
EGR1#1958522.295445247169274.5236953710125e-104.40718489601842e-08
ELF1#1997562.110207837993121.50435047935138e-091.33485862118079e-07
EP300#2033543.237104895717289.13461812603964e-171.84171888506844e-14
ETS1#2113292.49676165260062.70068542736109e-069.41444877664103e-05
FOS#2353524.140652000553181.11873731240395e-202.92831594411419e-18
FOSL1#806182.811580864875970.00797685585004890.0322517458914969
FOSL2#2355243.595794818667973.97259582102482e-082.62757400222933e-06
FOXA1#3169201.961313229979730.002660798006733480.0146822572528788
GABPB1#2553352.189105612976783.72692965840947e-060.000121979569600322
GATA1#2623354.200095442770051.33491818158606e-132.06238934861933e-11
GATA2#2624313.496397201240484.77408719987822e-104.63814784249378e-08
GATA3#2625133.133404536669720.0002717762413345660.00290077045158311
GTF2B#2959185.088397688653421.60268193608411e-081.16887219778414e-06
GTF2F1#2962303.382210852236542.14376572639155e-091.83669194994756e-07
HEY1#23462562.002178924016991.13798507624104e-088.54421447717744e-07
HMGN3#9324292.098919327231577.27131734507085e-050.00114231214230123
HSF1#329745.8155988200590.005204334282971130.024116401995706
IRF1#3659322.162736638177391.46675799887184e-050.000348547755731913
IRF3#366193.741925397375280.0007289877444173080.00581181305642743
IRF4#3662244.654409774175742.66844518639816e-102.71892435924134e-08
JUN#3725424.650786071487844.61058878097027e-181.02234667026699e-15
JUNB#3726184.876029981210453.04894406944946e-082.06236185018933e-06
JUND#3727503.094984045075681.57466873110116e-142.67844996103378e-12
MAFK#7975102.398294967949550.009184688775860730.0347386995640502
MAX#4149372.112783662241274.0391830074391e-060.00013028049231437
MEF2A#4205284.644340402389686.57314347228091e-128.42322124050977e-10
MEF2C#4208145.118220910590596.76449638682922e-073.0623200613093e-05
MXI1#4601302.644665034183885.15462307509125e-072.40869655185438e-05
MYC#4609462.12588465569941.02375377015787e-075.99326345299986e-06
NANOG#79923123.105640192673910.000510768811138660.00443131615438699
NFKB1#4790783.788220770682473.69176964866529e-321.62685540226563e-29
NFYA#4800233.750339434478783.76520743942639e-082.49672698264287e-06
NFYB#4801213.114651843577573.19693126773653e-060.000107635172363358
NR3C1#2908182.385083362487740.0005058725216919290.00443377142438598
PAX5#5079553.246248709865313.39068642342045e-177.01227523516055e-15
PBX3#5090142.715072368269180.0006555844727749180.00536798014520891
POLR2A#5430971.843389009965783.54610992376171e-187.89663484707353e-16
POU2F2#5452493.948673263976851.89972792138008e-184.2852199650327e-16
PRDM1#63944.666582505396840.01105683307715370.0406693171002625
RAD21#5885201.832749362027670.005701289473952280.0257041645314095
REST#5978252.134962105338060.0002001048270637130.00240160285379305
RFX5#5993333.518416436260529.30893924055347e-111.01272531806684e-08
RXRA#6256142.487120707503240.001511460460112370.009651814062591
SETDB1#986982.854515127646760.007315906403366760.0302588392087926
SIN3A#25942492.345445589503919.93910696295933e-109.23514583722873e-08
SIX5#147912162.419357926436670.0009177863444959130.00667730324157496
SMARCB1#6598172.745983790085630.0001454253002017150.00187947938717571
SMARCC2#660154.166167010039720.007343129231577390.0303654210412065
SP1#6667552.773548458387163.49835029250443e-145.78107921200745e-12
SP2#6668133.008813242654690.0003994310599470580.00390053113322214
SPI1#6688342.46855751583873.50947156535219e-071.73380180138986e-05
SREBF1#6720135.407752590498659.5226189052277e-074.06928312538084e-05
SREBF2#6721519.33377267306857.02435613897748e-060.000202768582310301
SRF#6722323.907165525569651.339630289454e-111.65377834279298e-09
STAT3#6774312.885870928422844.42424132863666e-082.89876624919375e-06
TAF1#6872732.159667069552272.84227679809916e-144.71930916560696e-12
TAF7#6879232.327084923126110.0001080502839088670.0015040202054056
TAL1#6886112.907564455326040.001488240585563730.00951750404235447
TBP#6908782.558655872509011.52483061793185e-203.97136620713678e-18
TCF12#6938323.0115298838059.03457520958592e-096.90748170068773e-07
TCF7L2#6934292.764027613548523.39933605809316e-071.68737290195433e-05
TFAP2C#7022242.295765368465899.16183333387457e-050.00133508122164996
THAP1#55145113.053633545410310.00100812219744410.00721837886870045
TRIM28#10155182.961322573581643.45147705808527e-050.000677318324820307
USF1#7391452.533340420127066.26621038400348e-105.98752741349441e-08
USF2#7392313.564231141036792.98657280119873e-103.02242903860847e-08
YY1#7528552.390392842849221.77009623719073e-112.14214462243294e-09
ZBTB7A#51341271.756650896572120.002213519682961390.012727951449034
ZNF263#10127271.964510833622020.0004062057445107080.00390677979104464



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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