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{{Coexpression_clusters
{
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Latest revision as of 10:15, 17 September 2013


Full id: C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small



Phase1 CAGE Peaks

Hg19::chr10:104176010..104176027,-p2@CU691700
Hg19::chr10:18579832..18579846,+p@chr10:18579832..18579846
+
Hg19::chr10:2653147..2653183,-p@chr10:2653147..2653183
-
Hg19::chr10:5686981..5686990,-p@chr10:5686981..5686990
-
Hg19::chr10:62268352..62268366,-p@chr10:62268352..62268366
-
Hg19::chr10:62268375..62268391,-p@chr10:62268375..62268391
-
Hg19::chr10:85954449..85954467,+p5@CDHR1
Hg19::chr10:85954494..85954501,+p9@CDHR1
Hg19::chr10:85974007..85974016,+p@chr10:85974007..85974016
+
Hg19::chr10:85985282..85985289,-p2@LRIT2
Hg19::chr10:85985294..85985305,-p1@LRIT2
Hg19::chr10:94736962..94736988,+p@chr10:94736962..94736988
+
Hg19::chr10:95372289..95372299,+p1@PDE6C
Hg19::chr11:115498676..115498686,+p2@ENST00000424313
Hg19::chr11:115498688..115498698,+p1@ENST00000424313
Hg19::chr11:115498703..115498713,+p3@ENST00000424313
Hg19::chr11:115498753..115498757,+p4@ENST00000424313
Hg19::chr11:115498761..115498762,+p5@ENST00000424313
Hg19::chr11:47293795..47293821,+p13@MADD
Hg19::chr11:57448930..57448940,+p24@ZDHHC5
Hg19::chr11:57448944..57448954,+p23@ZDHHC5
Hg19::chr11:61099320..61099331,-p@chr11:61099320..61099331
-
Hg19::chr11:61957687..61957689,+p1@SCGB1D1
Hg19::chr11:62380709..62380748,+p2@ROM1
Hg19::chr11:62437526..62437543,-p19@C11orf48
Hg19::chr11:62437545..62437566,-p17@C11orf48
Hg19::chr11:62437577..62437583,-p21@C11orf48
Hg19::chr11:637246..637307,+p1@DRD4
Hg19::chr11:639444..639447,+p@chr11:639444..639447
+
Hg19::chr11:67222821..67222829,+p5@CABP4
Hg19::chr11:67222863..67222872,+p4@CABP4
Hg19::chr11:75310097..75310110,-p8@MAP6
Hg19::chr11:85338311..85338317,-p60@DLG2
Hg19::chr11:85392197..85392232,+p@chr11:85392197..85392232
+
Hg19::chr11:90377595..90377634,-p@chr11:90377595..90377634
-
Hg19::chr12:10876627..10876637,-p@chr12:10876627..10876637
-
Hg19::chr12:10876642..10876654,-p@chr12:10876642..10876654
-
Hg19::chr12:120801369..120801380,-p@chr12:120801369..120801380
-
Hg19::chr12:120801381..120801401,-p@chr12:120801381..120801401
-
Hg19::chr12:120807136..120807142,+p2@RPS27P25
Hg19::chr12:52281955..52281968,+p5@ANKRD33
Hg19::chr12:52282009..52282021,+p4@ANKRD33
Hg19::chr12:52282026..52282055,+p2@ANKRD33
Hg19::chr12:53848759..53848774,+p30@PCBP2
Hg19::chr12:55026082..55026087,+p@chr12:55026082..55026087
+
Hg19::chr12:55028678..55028679,-p1@LACRT
Hg19::chr12:56848437..56848442,-p1@MIP
Hg19::chr12:91451794..91451806,-p2@KERA
Hg19::chr13:113789817..113789825,-p@chr13:113789817..113789825
-
Hg19::chr13:114321528..114321539,+p1@GRK1
Hg19::chr13:26014686..26014697,+p@chr13:26014686..26014697
+
Hg19::chr13:36086777..36086789,+p@chr13:36086777..36086789
+
Hg19::chr14:102530459..102530469,-p@chr14:102530459..102530469
-
Hg19::chr14:22958300..22958349,+p2@uc001wek.2
Hg19::chr14:24551143..24551178,-p6@NRL
Hg19::chr14:24551209..24551214,-p11@NRL
Hg19::chr14:24551310..24551328,+p@chr14:24551310..24551328
+
Hg19::chr14:24553835..24553850,-p1@NRL
Hg19::chr14:24553892..24553899,-p8@NRL
Hg19::chr14:57360435..57360442,-p1@ENST00000557467
Hg19::chr14:64408155..64408156,+p@chr14:64408155..64408156
+
Hg19::chr14:64408164..64408171,+p@chr14:64408164..64408171
+
Hg19::chr14:68189203..68189220,+p1@RDH12
Hg19::chr14:68189243..68189252,+p2@RDH12
Hg19::chr14:74706150..74706155,+p1@VSX2
Hg19::chr14:83262540..83262572,-p1@ENST00000554451
Hg19::chr14:85761792..85761800,-p@chr14:85761792..85761800
-
Hg19::chr15:44092409..44092423,-p3@SERINC4
Hg19::chr15:52483547..52483565,-p4@GNB5
Hg19::chr15:52483566..52483575,-p8@GNB5
Hg19::chr15:52483579..52483605,-p5@GNB5
Hg19::chr15:53097157..53097166,-p4@ENST00000560818
Hg19::chr15:65407524..65407549,-p1@UBAP1L
Hg19::chr15:72102881..72102925,+p1@NR2E3
Hg19::chr15:72102951..72102966,+p2@NR2E3
Hg19::chr15:72123338..72123342,+p@chr15:72123338..72123342
+
Hg19::chr15:72571208..72571220,+p1@uc002aug.2
Hg19::chr15:75122737..75122741,+p@chr15:75122737..75122741
+
Hg19::chr15:75122780..75122791,+p@chr15:75122780..75122791
+
Hg19::chr15:89764876..89764890,-p2@RLBP1
Hg19::chr15:89764914..89764925,-p4@RLBP1
Hg19::chr15:89764929..89764970,-p3@RLBP1
Hg19::chr16:57880444..57880457,-p18@KIFC3
Hg19::chr16:57880460..57880474,-p9@KIFC3
Hg19::chr16:58004992..58005021,-p1@CNGB1
Hg19::chr16:58005026..58005040,-p2@CNGB1
Hg19::chr16:71114767..71114777,+p@chr16:71114767..71114777
+
Hg19::chr16:84163960..84163970,-p@chr16:84163960..84163970
-
Hg19::chr16:84273612..84273622,-p1@KCNG4
Hg19::chr16:84273723..84273752,+p@chr16:84273723..84273752
+
Hg19::chr17:10020561..10020571,-p@chr17:10020561..10020571
-
Hg19::chr17:14683503..14683516,-p1@ENST00000379640
Hg19::chr17:14683517..14683523,-p2@ENST00000379640
Hg19::chr17:26876257..26876262,-p15@UNC119
Hg19::chr17:26876300..26876327,-p6@UNC119
Hg19::chr17:27573875..27573878,+p1@CRYBA1
Hg19::chr17:36499833..36499844,-p1@GPR179
Hg19::chr17:37043..37074,-p1@ENST00000477499
Hg19::chr17:39023472..39023477,-p1@KRT12
Hg19::chr17:58354770..58354781,-p@chr17:58354770..58354781
-
Hg19::chr17:6338428..6338463,-p1@AIPL1
Hg19::chr17:6338479..6338490,-p2@AIPL1
Hg19::chr17:74536118..74536138,+p2@PRCD
Hg19::chr17:74536139..74536146,+p9@PRCD
Hg19::chr17:74536164..74536167,+p14@PRCD
Hg19::chr17:76775728..76775750,+p@chr17:76775728..76775750
+
Hg19::chr17:7897761..7897776,-p@chr17:7897761..7897776
-
Hg19::chr17:7905928..7905945,+p3@GUCY2D
Hg19::chr17:7905946..7905966,+p1@GUCY2D
Hg19::chr17:79495397..79495408,+p1@FSCN2
Hg19::chr17:79618147..79618157,-p@chr17:79618147..79618157
-
Hg19::chr17:79618703..79618722,-p@chr17:79618703..79618722
-
Hg19::chr17:79623545..79623592,-p1@PDE6G
Hg19::chr17:79623597..79623629,-p3@PDE6G
Hg19::chr17:9801276..9801291,+p@chr17:9801276..9801291
+
Hg19::chr17:9801347..9801374,+p@chr17:9801347..9801374
+
Hg19::chr17:9801376..9801403,-p@chr17:9801376..9801403
-
Hg19::chr17:9801420..9801435,-p@chr17:9801420..9801435
-
Hg19::chr17:9801479..9801487,+p@chr17:9801479..9801487
+
Hg19::chr17:9801487..9801493,-p@chr17:9801487..9801493
-
Hg19::chr17:9804379..9804392,-p3@RCVRN
Hg19::chr17:9804491..9804501,-p5@RCVRN
Hg19::chr17:9804798..9804827,-p6@RCVRN
Hg19::chr17:9808183..9808184,-p4@RCVRN
Hg19::chr17:9808283..9808291,+p@chr17:9808283..9808291
+
Hg19::chr17:9808298..9808311,+p@chr17:9808298..9808311
+
Hg19::chr17:9808496..9808505,-p2@RCVRN
Hg19::chr17:9808565..9808623,-p1@RCVRN
Hg19::chr18:56941243..56941247,-p3@RAX
Hg19::chr18:616672..616681,+p4@CLUL1
Hg19::chr18:70532906..70532934,-p13@NETO1
Hg19::chr19:10124147..10124176,+p1@RDH8
Hg19::chr19:12939512..12939515,-p@chr19:12939512..12939515
-
Hg19::chr19:12941129..12941138,-p11@RTBDN
Hg19::chr19:12941180..12941203,-p9@RTBDN
Hg19::chr19:12941215..12941224,-p14@RTBDN
Hg19::chr19:12941237..12941246,-p15@RTBDN
Hg19::chr19:12941331..12941335,+p@chr19:12941331..12941335
+
Hg19::chr19:17571680..17571693,-p3@NXNL1
Hg19::chr19:17571712..17571719,-p4@NXNL1
Hg19::chr19:17571722..17571754,-p1@NXNL1
Hg19::chr19:1859361..1859375,-p@chr19:1859361..1859375
-
Hg19::chr19:33166742..33166812,+p1@RGS9BP
Hg19::chr19:37837185..37837191,+p10@HKR1
Hg19::chr19:37837218..37837237,+p5@HKR1
Hg19::chr19:48342870..48342880,+p3@CRX
Hg19::chr19:48343979..48343982,+p@chr19:48343979..48343982
+
Hg19::chr19:48480848..48480856,-p@chr19:48480848..48480856
-
Hg19::chr19:48547278..48547283,-p5@CABP5
Hg19::chr19:48547294..48547342,-p1@CABP5
Hg19::chr19:48547350..48547359,-p4@CABP5
Hg19::chr19:48547381..48547392,-p3@CABP5
Hg19::chr19:48564591..48564596,+p@chr19:48564591..48564596
+
Hg19::chr19:48564631..48564642,+p@chr19:48564631..48564642
+
Hg19::chr19:48564666..48564682,+p@chr19:48564666..48564682
+
Hg19::chr19:48565320..48565339,-p@chr19:48565320..48565339
-
Hg19::chr19:48958824..48958862,+p2@KCNJ14
Hg19::chr19:5857821..5857832,-p@chr19:5857821..5857832
-
Hg19::chr19:7698377..7698384,-p2@PCP2
Hg19::chr1:10596058..10596063,+p4@PEX14
Hg19::chr1:10854315..10854324,+p@chr1:10854315..10854324
+
Hg19::chr1:11249404..11249419,+p1@ANGPTL7
Hg19::chr1:145103756..145103763,+p@chr1:145103756..145103763
+
Hg19::chr1:154167173..154167180,-p15@TPM3
Hg19::chr1:154966058..154966066,+p1@LENEP
Hg19::chr1:159908068..159908074,-p@chr1:159908068..159908074
-
Hg19::chr1:1763721..1763741,-p4@GNB1
Hg19::chr1:1763752..1763766,-p11@GNB1
Hg19::chr1:186430222..186430262,-p1@PDC
Hg19::chr1:19567634..19567652,-p3@KIAA0090
Hg19::chr1:197382782..197382808,-p@chr1:197382782..197382808
-
Hg19::chr1:197382940..197382951,+p7@CRB1
Hg19::chr1:197382957..197382964,+p9@CRB1
Hg19::chr1:201237916..201237923,+p@chr1:201237916..201237923
+
Hg19::chr1:224066755..224066762,-p@chr1:224066755..224066762
-
Hg19::chr1:228332390..228332414,+p6@GUK1
Hg19::chr1:230931255..230931261,-p2@ENST00000412344
Hg19::chr1:23299353..23299365,-p@chr1:23299353..23299365
-
Hg19::chr1:31353622..31353644,-p19@SDC3
Hg19::chr1:36203402..36203446,-p5@CLSPN
Hg19::chr1:6511651..6511677,+p16@ESPN
Hg19::chr1:66993130..66993141,+p@chr1:66993130..66993141
+
Hg19::chr1:82726890..82726924,-p1@ENST00000420549
Hg19::chr1:85661477..85661507,-p@chr1:85661477..85661507
-
Hg19::chr1:869322..869329,+p@chr1:869322..869329
+
Hg19::chr1:94586583..94586586,-p6@ABCA4
Hg19::chr1:94610653..94610687,+p1@ENST00000439455
Hg19::chr1:9565529..9565546,-p@chr1:9565529..9565546
-
Hg19::chr1:9810025..9810048,-p33@CLSTN1
Hg19::chr20:17511962..17512033,-p2@BFSP1
Hg19::chr20:2123772..2123776,+p@chr20:2123772..2123776
+
Hg19::chr20:25062773..25062779,-p3@VSX1
Hg19::chr20:4618187..4618233,-p@chr20:4618187..4618233
-
Hg19::chr20:4855088..4855119,-p@chr20:4855088..4855119
-
Hg19::chr21:40717343..40717348,-p4@ENST00000459446
Hg19::chr21:40717370..40717378,-p3@ENST00000459446
Hg19::chr21:40717423..40717434,-p1@ENST00000459446
Hg19::chr21:40717453..40717463,-p@chr21:40717453..40717463
-
Hg19::chr21:40803161..40803184,+p@chr21:40803161..40803184
+
Hg19::chr21:44589135..44589151,+p1@CRYAA
Hg19::chr21:44589339..44589372,-p@chr21:44589339..44589372
-
Hg19::chr21:44592358..44592365,+p@chr21:44592358..44592365
+
Hg19::chr21:44592438..44592466,+p@chr21:44592438..44592466
+
Hg19::chr21:44592512..44592521,+p@chr21:44592512..44592521
+
Hg19::chr21:44592626..44592635,-p5@CU686889
Hg19::chr21:44592671..44592680,+p@chr21:44592671..44592680
+
Hg19::chr21:44592750..44592758,-p4@CU686889
Hg19::chr21:44592771..44592776,+p@chr21:44592771..44592776
+
Hg19::chr21:44592788..44592807,+p@chr21:44592788..44592807
+
Hg19::chr21:44592808..44592819,+p@chr21:44592808..44592819
+
Hg19::chr21:44592820..44592840,-p2@CU686889
Hg19::chr21:44592842..44592867,-p1@CU686889
Hg19::chr21:45359797..45359853,+p@chr21:45359797..45359853
+
Hg19::chr21:47283543..47283583,+p@chr21:47283543..47283583
+
Hg19::chr21:47283591..47283596,+p@chr21:47283591..47283596
+
Hg19::chr22:25615600..25615611,+p1@CRYBB2
Hg19::chr22:25623876..25623881,+p@chr22:25623876..25623881
+
Hg19::chr22:27013990..27013992,-p1@CRYBB1
Hg19::chr22:27017921..27017928,+p1@CRYBA4
Hg19::chr2:139332462..139332508,+p@chr2:139332462..139332508
+
Hg19::chr2:157659839..157659856,+p@chr2:157659839..157659856
+
Hg19::chr2:165628510..165628525,-p35@COBLL1
Hg19::chr2:165628552..165628565,-p25@COBLL1
Hg19::chr2:169804279..169804286,+p@chr2:169804279..169804286
+
Hg19::chr2:202563351..202563376,-p1@MPP4
Hg19::chr2:208977374..208977379,-p2@ENST00000412192
Hg19::chr2:208989237..208989255,-p1@CRYGD
Hg19::chr2:208994548..208994553,-p1@CRYGC
Hg19::chr2:208994610..208994617,-p2@CRYGC
Hg19::chr2:209010807..209010823,-p2@CRYGB
Hg19::chr2:209010874..209010887,-p1@CRYGB
Hg19::chr2:209028312..209028316,-p1@CRYGA
Hg19::chr2:219472540..219472558,+p5@PLCD4
Hg19::chr2:219858142..219858144,-p1@CRYBA2
Hg19::chr2:234216516..234216542,+p1@SAG
Hg19::chr2:234216548..234216555,+p7@SAG
Hg19::chr2:234216556..234216561,+p5@SAG
Hg19::chr2:234216563..234216583,+p4@SAG
Hg19::chr2:29297416..29297432,-p2@C2orf71
Hg19::chr2:33584334..33584335,+p@chr2:33584334..33584335
+
Hg19::chr2:56241382..56241393,-p@chr2:56241382..56241393
-
Hg19::chr2:62044363..62044373,-p@chr2:62044363..62044373
-
Hg19::chr2:68413934..68413943,-p@chr2:68413934..68413943
-
Hg19::chr2:68416043..68416054,-p@chr2:68416043..68416054
-
Hg19::chr2:68416074..68416086,-p@chr2:68416074..68416086
-
Hg19::chr2:68416088..68416103,-p@chr2:68416088..68416103
-
Hg19::chr2:68416105..68416117,-p@chr2:68416105..68416117
-
Hg19::chr2:97527791..97527826,-p15@SEMA4C
Hg19::chr3:107816263..107816276,-p@chr3:107816263..107816276
-
Hg19::chr3:108229441..108229444,-p1@MYH15
Hg19::chr3:129247412..129247420,+p2@RHO
Hg19::chr3:129247479..129247493,+p1@RHO
Hg19::chr3:129247888..129247895,-p@chr3:129247888..129247895
-
Hg19::chr3:129249717..129249721,+p@chr3:129249717..129249721
+
Hg19::chr3:129249733..129249742,+p@chr3:129249733..129249742
+
Hg19::chr3:129249800..129249811,+p@chr3:129249800..129249811
+
Hg19::chr3:129249819..129249830,+p@chr3:129249819..129249830
+
Hg19::chr3:129249840..129249855,+p@chr3:129249840..129249855
+
Hg19::chr3:129249861..129249862,+p@chr3:129249861..129249862
+
Hg19::chr3:129251081..129251090,+p@chr3:129251081..129251090
+
Hg19::chr3:129251107..129251110,+p@chr3:129251107..129251110
+
Hg19::chr3:129251125..129251130,+p@chr3:129251125..129251130
+
Hg19::chr3:129251149..129251152,+p@chr3:129251149..129251152
+
Hg19::chr3:129251156..129251159,+p@chr3:129251156..129251159
+
Hg19::chr3:129251171..129251178,+p@chr3:129251171..129251178
+
Hg19::chr3:129251189..129251197,+p@chr3:129251189..129251197
+
Hg19::chr3:129251370..129251383,+p@chr3:129251370..129251383
+
Hg19::chr3:129251390..129251399,+p@chr3:129251390..129251399
+
Hg19::chr3:129251417..129251429,-p@chr3:129251417..129251429
-
Hg19::chr3:129251421..129251431,+p@chr3:129251421..129251431
+
Hg19::chr3:129251449..129251458,+p@chr3:129251449..129251458
+
Hg19::chr3:129251460..129251463,-p@chr3:129251460..129251463
-
Hg19::chr3:129251469..129251480,+p@chr3:129251469..129251480
+
Hg19::chr3:129251490..129251499,+p@chr3:129251490..129251499
+
Hg19::chr3:129251517..129251524,+p@chr3:129251517..129251524
+
Hg19::chr3:129251523..129251534,-p@chr3:129251523..129251534
-
Hg19::chr3:129251568..129251574,+p@chr3:129251568..129251574
+
Hg19::chr3:129252483..129252488,-p@chr3:129252483..129252488
-
Hg19::chr3:129252504..129252511,-p@chr3:129252504..129252511
-
Hg19::chr3:129252555..129252560,+p@chr3:129252555..129252560
+
Hg19::chr3:129252591..129252612,+p@chr3:129252591..129252612
+
Hg19::chr3:129252699..129252709,+p@chr3:129252699..129252709
+
Hg19::chr3:133118890..133118925,+p1@BFSP2
Hg19::chr3:138340049..138340056,+p19@FAIM
Hg19::chr3:138340071..138340080,+p18@FAIM
Hg19::chr3:14329906..14329938,-p@chr3:14329906..14329938
-
Hg19::chr3:169629479..169629492,+p2@SAMD7
Hg19::chr3:169656794..169656796,+p@chr3:169656794..169656796
+
Hg19::chr3:169756564..169756582,+p7@GPR160
Hg19::chr3:179644024..179644034,-p@chr3:179644024..179644034
-
Hg19::chr3:186262166..186262170,-p1@CRYGS
Hg19::chr3:22057863..22057906,+p@chr3:22057863..22057906
+
Hg19::chr3:25704989..25705004,-p@chr3:25704989..25705004
-
Hg19::chr3:27498235..27498278,-p3@SLC4A7
Hg19::chr3:42755646..42755649,-p9@CCDC13
Hg19::chr3:50229037..50229052,+p1@GNAT1
Hg19::chr3:50230292..50230317,+p2@GNAT1
Hg19::chr3:50231218..50231225,+p@chr3:50231218..50231225
+
Hg19::chr3:50231579..50231591,+p@chr3:50231579..50231591
+
Hg19::chr3:50232852..50232865,+p@chr3:50232852..50232865
+
Hg19::chr3:51437888..51437892,-p@chr3:51437888..51437892
-
Hg19::chr3:51994798..51994819,-p17@PCBP4
Hg19::chr3:58612838..58612845,-p24@FAM107A
Hg19::chr3:58612857..58612894,-p5@FAM107A
Hg19::chr3:62418360..62418377,-p@chr3:62418360..62418377
-
Hg19::chr3:64448359..64448387,-p@chr3:64448359..64448387
-
Hg19::chr3:64448399..64448410,-p@chr3:64448399..64448410
-
Hg19::chr4:110769258..110769269,+p@chr4:110769258..110769269
+
Hg19::chr4:111563332..111563338,-p19@PITX2
Hg19::chr4:16077593..16077600,-p30@PROM1
Hg19::chr4:16077753..16077760,-p22@PROM1
Hg19::chr4:16077769..16077771,-p24@PROM1
Hg19::chr4:16077778..16077810,-p2@PROM1
Hg19::chr4:16077817..16077824,-p19@PROM1
Hg19::chr4:16080674..16080705,-p@chr4:16080674..16080705
-
Hg19::chr4:16178400..16178407,-p12@TAPT1
Hg19::chr4:16178410..16178421,-p6@TAPT1
Hg19::chr4:164909684..164909708,-p13@MARCH1
Hg19::chr4:164909713..164909733,-p10@MARCH1
Hg19::chr4:184161775..184161785,-p1@ENST00000511846
p1@uc003ivm.2
Hg19::chr4:2869796..2869817,+p5@ADD1
Hg19::chr4:47951890..47951912,-p@chr4:47951890..47951912
-
Hg19::chr4:47983576..47983583,-p8@CNGA1
Hg19::chr4:47983608..47983615,-p9@CNGA1
Hg19::chr4:47983625..47983631,-p11@CNGA1
Hg19::chr4:47983637..47983656,-p6@CNGA1
Hg19::chr4:619347..619382,+p4@PDE6B
Hg19::chr4:619386..619407,+p7@PDE6B
Hg19::chr4:71263648..71263668,+p1@PROL1
Hg19::chr4:71275176..71275179,+p@chr4:71275176..71275179
+
Hg19::chr4:71275185..71275188,+p@chr4:71275185..71275188
+
Hg19::chr4:71275244..71275257,+p@chr4:71275244..71275257
+
Hg19::chr4:71275284..71275291,+p@chr4:71275284..71275291
+
Hg19::chr4:71275341..71275353,+p@chr4:71275341..71275353
+
Hg19::chr4:71275365..71275380,+p@chr4:71275365..71275380
+
Hg19::chr4:71275407..71275418,+p@chr4:71275407..71275418
+
Hg19::chr4:71275469..71275480,+p@chr4:71275469..71275480
+
Hg19::chr4:71275540..71275563,-p@chr4:71275540..71275563
-
Hg19::chr4:76823718..76823737,-p2@PPEF2
Hg19::chr5:121440825..121440836,-p@chr5:121440825..121440836
-
Hg19::chr5:121440854..121440862,-p@chr5:121440854..121440862
-
Hg19::chr5:132395483..132395521,+p@chr5:132395483..132395521
+
Hg19::chr5:132401275..132401287,+p@chr5:132401275..132401287
+
Hg19::chr5:176813897..176813925,-p@chr5:176813897..176813925
-
Hg19::chr5:178423185..178423198,-p3@GRM6
Hg19::chr5:180236453..180236465,-p36@MGAT1
Hg19::chr5:31855176..31855226,+p6@PDZD2
Hg19::chr5:39075233..39075239,-p@chr5:39075233..39075239
-
Hg19::chr5:39075268..39075277,-p@chr5:39075268..39075277
-
Hg19::chr5:74144678..74144683,-p25@FAM169A
Hg19::chr6:10838674..10838689,-p4@MAK
Hg19::chr6:131321830..131321850,-p10@EPB41L2
Hg19::chr6:131321863..131321880,-p13@EPB41L2
Hg19::chr6:138266479..138266490,+p2@ENST00000417800
p2@ENST00000434437
Hg19::chr6:138266498..138266520,+p1@ENST00000417800
p1@ENST00000434437
Hg19::chr6:138266527..138266537,+p3@ENST00000417800
p3@ENST00000434437
Hg19::chr6:152489484..152489497,-p42@SYNE1
Hg19::chr6:15548591..15548607,-p11@DTNBP1
Hg19::chr6:22294835..22294850,-p8@PRL
Hg19::chr6:33297046..33297063,-p14@DAXX
Hg19::chr6:33297065..33297072,-p24@DAXX
Hg19::chr6:35480028..35480060,-p2@TULP1
Hg19::chr6:35480640..35480653,-p3@TULP1
Hg19::chr6:35480659..35480679,-p1@TULP1
Hg19::chr6:42141007..42141017,+p7@GUCA1A
Hg19::chr6:42141039..42141080,+p3@GUCA1A
Hg19::chr6:42141096..42141110,+p4@GUCA1A
Hg19::chr6:42141112..42141149,+p2@GUCA1A
Hg19::chr6:42162685..42162699,-p1@GUCA1B
Hg19::chr6:42662714..42662724,-p@chr6:42662714..42662724
-
Hg19::chr6:42665543..42665549,-p@chr6:42665543..42665549
-
Hg19::chr6:42673308..42673313,-p@chr6:42673308..42673313
-
Hg19::chr6:42690328..42690344,-p1@PRPH2
Hg19::chr6:42690348..42690359,-p2@PRPH2
Hg19::chr6:42690448..42690481,+p@chr6:42690448..42690481
+
Hg19::chr6:64029879..64029891,-p1@LGSN
Hg19::chr6:76782324..76782331,-p3@IMPG1
Hg19::chr6:76782342..76782370,-p2@IMPG1
Hg19::chr6:76782371..76782404,-p1@IMPG1
Hg19::chr6:76782421..76782427,-p6@IMPG1
Hg19::chr6:89927151..89927156,-p2@GABRR1
Hg19::chr6:90024998..90025004,-p2@GABRR2
Hg19::chr6:90025011..90025020,-p1@GABRR2
Hg19::chr7:103969674..103969685,-p@chr7:103969674..103969685
-
Hg19::chr7:107986091..107986099,+p1@BX537743
Hg19::chr7:128049196..128049205,+p@chr7:128049196..128049205
+
Hg19::chr7:128415847..128415849,-p1@OPN1SW
Hg19::chr7:129416813..129416819,-p@chr7:129416813..129416819
-
Hg19::chr7:129421744..129421749,-p@chr7:129421744..129421749
-
Hg19::chr7:129421834..129421856,+p@chr7:129421834..129421856
+
Hg19::chr7:129421935..129421976,+p@chr7:129421935..129421976
+
Hg19::chr7:131271373..131271384,+p@chr7:131271373..131271384
+
Hg19::chr7:132978331..132978342,+p@chr7:132978331..132978342
+
Hg19::chr7:132978345..132978369,+p@chr7:132978345..132978369
+
Hg19::chr7:21181343..21181348,+p@chr7:21181343..21181348
+
Hg19::chr7:27826855..27826890,+p@chr7:27826855..27826890
+
Hg19::chr7:50095984..50095989,-p5@ZPBP
Hg19::chr7:50096016..50096027,-p3@ZPBP
Hg19::chr7:55594117..55594143,+p@chr7:55594117..55594143
+
Hg19::chr7:68895865..68895870,-p1@ENST00000421513
Hg19::chr7:69201619..69201635,+p@chr7:69201619..69201635
+
Hg19::chr7:75864299..75864307,+p7@SRRM3
Hg19::chr8:105105723..105105733,+p@chr8:105105723..105105733
+
Hg19::chr8:105106734..105106746,+p@chr8:105106734..105106746
+
Hg19::chr8:10512647..10512659,-p2@RP1L1
Hg19::chr8:10512699..10512701,-p4@RP1L1
Hg19::chr8:132952112..132952120,+p25@EFR3A
Hg19::chr8:55528628..55528631,+p14@RP1
Hg19::chr8:55528641..55528674,+p1@RP1
Hg19::chr8:55528684..55528695,+p9@RP1
Hg19::chr8:65285241..65285259,+p@chr8:65285241..65285259
+
Hg19::chr8:66595006..66595026,+p@chr8:66595006..66595026
+
Hg19::chr8:82502368..82502380,-p@chr8:82502368..82502380
-
Hg19::chr8:86999516..86999530,+p5@ATP6V0D2
Hg19::chr8:9763479..9763502,-p@chr8:9763479..9763502
-
Hg19::chr9:117132446..117132470,-p@chr9:117132446..117132470
-
Hg19::chr9:138413277..138413293,+p1@LCN1
Hg19::chr9:138415075..138415108,+p@chr9:138415075..138415108
+
Hg19::chr9:138415792..138415799,+p@chr9:138415792..138415799
+
Hg19::chr9:138418257..138418276,-p@chr9:138418257..138418276
-
Hg19::chr9:138418306..138418313,+p@chr9:138418306..138418313
+
Hg19::chr9:138418316..138418326,-p@chr9:138418316..138418326
-
Hg19::chr9:138418322..138418324,+p@chr9:138418322..138418324
+
Hg19::chr9:138418336..138418339,+p@chr9:138418336..138418339
+
Hg19::chr9:139226167..139226185,-p@chr9:139226167..139226185
-
Hg19::chr9:2717492..2717499,+p3@KCNV2
Hg19::chr9:2717502..2717524,+p1@KCNV2
Hg19::chr9:2717530..2717555,+p2@KCNV2
Hg19::chr9:2717560..2717567,+p5@KCNV2
Hg19::chr9:32783532..32783551,+p2@TMEM215
Hg19::chr9:32832416..32832417,-p@chr9:32832416..32832417
-
Hg19::chr9:6449581..6449590,-p1@ENST00000411561
Hg19::chr9:71760334..71760351,+p@chr9:71760334..71760351
+
Hg19::chr9:71760380..71760385,+p@chr9:71760380..71760385
+
Hg19::chr9:77230443..77230455,+p6@RORB
Hg19::chr9:77230499..77230502,+p10@RORB
Hg19::chr9:85882100..85882106,-p12@FRMD3
Hg19::chrX:153409678..153409686,+p2@OPN1LW
Hg19::chrX:153409714..153409717,+p1@OPN1LW
Hg19::chrX:18690210..18690230,-p1@RS1
Hg19::chrX:33147223..33147231,-p30@DMD
Hg19::chrX:69488174..69488189,+p1@ARR3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
4.83345641474546e-213.05957791053388e-181229Phototransduction (KEGG):04744
1.35517186159513e-104.28911894194859e-08617{CNGB1,17} (Static Module):NA
8.55309257921433e-050.0180470253421422318{OTX2,18} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003008system process0
GO:0007601visual perception9.28005666037585e-95
GO:0050953sensory perception of light stimulus9.28005666037585e-95
GO:0032501multicellular organismal process4.75541250480415e-58
GO:0007600sensory perception4.1045935741495e-57
GO:0050877neurological system process1.5411372358457e-52
GO:0009584detection of visible light4.49089522501762e-29
GO:0009583detection of light stimulus7.40022621362375e-29
GO:0005212structural constituent of eye lens3.44889427763949e-28
GO:0050962detection of light stimulus during sensory perception4.31549070751748e-27
GO:0050908detection of light stimulus during visual perception4.31549070751748e-27
GO:0009582detection of abiotic stimulus1.40047509303825e-26
GO:0050906detection of stimulus during sensory perception1.97627418215132e-26
GO:0009581detection of external stimulus9.00434831993419e-26
GO:0007602phototransduction2.51838033293462e-25
GO:0051606detection of stimulus4.74004200843173e-24
GO:0009416response to light stimulus4.61006572285475e-22
GO:0009314response to radiation1.95186369544272e-20
GO:0009628response to abiotic stimulus6.49323376543073e-17
GO:0007603phototransduction, visible light6.6106018274717e-09
GO:0009605response to external stimulus5.51714854150995e-08
GO:0005886plasma membrane4.31859602833272e-06
GO:0009586rhodopsin mediated phototransduction6.16957634604802e-06
GO:0016056rhodopsin mediated signaling6.16957634604802e-06
GO:0044459plasma membrane part1.14421918953673e-05
GO:0008048calcium sensitive guanylate cyclase activator activity1.41994535734861e-05
GO:0001654eye development2.3472577783599e-05
GO:0030250guanylate cyclase activator activity2.62999856641857e-05
GO:0030249guanylate cyclase regulator activity4.28419357064365e-05
GO:0001750photoreceptor outer segment4.28419357064365e-05
GO:0042995cell projection6.04056214172142e-05
GO:0005625soluble fraction6.08708280088107e-05
GO:0031513nonmotile primary cilium9.29748915332394e-05
GO:0046530photoreceptor cell differentiation0.000128570683930671
GO:0005887integral to plasma membrane0.000159200861948719
GO:0031226intrinsic to plasma membrane0.000180872506453625
GO:0005929cilium0.000319265100671098
GO:0005200structural constituent of cytoskeleton0.000319265100671098
GO:0007423sensory organ development0.000329321645891407
GO:0007154cell communication0.000560073589708165
GO:0016020membrane0.000602841705538677
GO:0009881photoreceptor activity0.000692789598533222
GO:0017071intracellular cyclic nucleotide activated cation channel complex0.000702961623409981
GO:0002088lens development in camera-type eye0.000702961623409981
GO:0018298protein-chromophore linkage0.00103230567292462
GO:0032502developmental process0.00103230567292462
GO:0008092cytoskeletal protein binding0.00127877157210505
GO:0007165signal transduction0.00127877157210505
GO:0030551cyclic nucleotide binding0.00164279199645877
GO:00475553',5'-cyclic-GMP phosphodiesterase activity0.00301066660739653
GO:0007168receptor guanylyl cyclase signaling pathway0.00301066660739653
GO:0003779actin binding0.00322284134000015
GO:0043010camera-type eye development0.00385791840489341
GO:0042461photoreceptor cell development0.00528233980031035
GO:0044425membrane part0.00665436222718468
GO:0000267cell fraction0.00674574472996517
GO:0004745retinol dehydrogenase activity0.00800426326928108
GO:00041143',5'-cyclic-nucleotide phosphodiesterase activity0.00811866182478278
GO:0004112cyclic-nucleotide phosphodiesterase activity0.00897255159794482
GO:0004385guanylate kinase activity0.00897255159794482
GO:0019002GMP binding0.00897255159794482
GO:0030553cGMP binding0.00897255159794482
GO:0015629actin cytoskeleton0.00965296690744605
GO:0007166cell surface receptor linked signal transduction0.00965296690744605
GO:0032583regulation of gene-specific transcription0.0102455928279423
GO:0030016myofibril0.0113847854074956
GO:0005856cytoskeleton0.0113847854074956
GO:0007030Golgi organization and biogenesis0.0134388765852486
GO:0000187activation of MAPK activity0.0136307117177699
GO:0045494photoreceptor cell maintenance0.0148157574683946
GO:0006776vitamin A metabolic process0.0148157574683946
GO:0044449contractile fiber part0.0151560436621496
GO:0005515protein binding0.0154432675660726
GO:0008081phosphoric diester hydrolase activity0.0175280685333669
GO:0043292contractile fiber0.0175280685333669
GO:0043406positive regulation of MAP kinase activity0.0188975687482529
GO:0006775fat-soluble vitamin metabolic process0.019764354657535
GO:0016776phosphotransferase activity, phosphate group as acceptor0.0215832859302441
GO:0007186G-protein coupled receptor protein signaling pathway0.0215832859302441
GO:0045211postsynaptic membrane0.0216829747528152
GO:0022836gated channel activity0.0251334271244045
GO:0044456synapse part0.0279736933200188
GO:0022834ligand-gated channel activity0.0287896648415937
GO:0015276ligand-gated ion channel activity0.0287896648415937
GO:0005903brush border0.0287896648415937
GO:0016021integral to membrane0.0287896648415937
GO:0005249voltage-gated potassium channel activity0.0287896648415937
GO:0031224intrinsic to membrane0.0297328191844264
GO:0046534positive regulation of photoreceptor cell differentiation0.0297328191844264
GO:0060040retinal bipolar neuron differentiation0.0297328191844264
GO:0001918farnesylated protein binding0.0297328191844264
GO:0031282regulation of guanylate cyclase activity0.0297328191844264
GO:0009288flagellin-based flagellum0.0297328191844264
GO:0050254rhodopsin kinase activity0.0297328191844264
GO:0006649phospholipid transfer to membrane0.0297328191844264
GO:0046532regulation of photoreceptor cell differentiation0.0297328191844264
GO:0022838substrate specific channel activity0.0311651990342449
GO:0007214gamma-aminobutyric acid signaling pathway0.0320366458460763
GO:0048592eye morphogenesis0.0320366458460763
GO:0022803passive transmembrane transporter activity0.0323387229660409
GO:0015267channel activity0.0323387229660409
GO:0019205nucleobase, nucleoside, nucleotide kinase activity0.034991268080682
GO:0043405regulation of MAP kinase activity0.0368188627307908



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
eye4.86e-2021
visual system4.86e-2021
retina9.07e-186
photoreceptor array9.07e-186
posterior segment of eyeball9.07e-186
sense organ1.03e-1724
sensory system1.03e-1724
entire sense organ system1.03e-1724


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.19.8926e-11
MA0004.17.42032e-05
MA0006.10.000180017
MA0007.10.34058
MA0009.10.0121072
MA0014.10
MA0017.10.412885
MA0019.10.746106
MA0024.10.000441712
MA0025.10.391575
MA0027.10.823941
MA0028.11.0394e-06
MA0029.10.963493
MA0030.11.37042
MA0031.10.918073
MA0038.10.579443
MA0040.12.44444
MA0041.10.237759
MA0042.10.902319
MA0043.10.0121586
MA0046.10.0695138
MA0048.11.48509e-05
MA0050.10.000311032
MA0051.10.00626337
MA0052.11.83001
MA0055.10.686844
MA0056.10
MA0057.10.0646184
MA0058.12.90659e-05
MA0059.10.00828222
MA0060.13.98308e-08
MA0061.10.00418841
MA0063.10
MA0066.11.37264
MA0067.10.193946
MA0068.10.100297
MA0069.10.219806
MA0070.10.0252542
MA0071.13.69469
MA0072.13.84093
MA0073.13.45849e-09
MA0074.11.13096
MA0076.13.09328e-06
MA0077.10.0215432
MA0078.10.624537
MA0081.10.000363265
MA0083.10.263065
MA0084.10.449698
MA0087.11.89481
MA0088.10.117484
MA0089.10
MA0090.10.0552078
MA0091.11.77079
MA0092.12.10589
MA0093.11.0983e-06
MA0095.10
MA0098.10
MA0100.10.000748894
MA0101.10.000129284
MA0103.11.48189
MA0105.10.00641015
MA0106.10.0187931
MA0107.10.0016282
MA0108.21.58488
MA0109.10
MA0111.11.80389
MA0113.10.329092
MA0114.10.404243
MA0115.10.121893
MA0116.11.76652
MA0117.10.328746
MA0119.11.24403
MA0122.10.794365
MA0124.11.11799
MA0125.11.02922
MA0130.10
MA0131.10.00965404
MA0132.10
MA0133.10
MA0135.10.468297
MA0136.10.000602123
MA0139.10.0130063
MA0140.10.937915
MA0141.12.1747
MA0142.10.145908
MA0143.10.837569
MA0144.10.129097
MA0145.10.0891656
MA0146.13.01686e-07
MA0147.13.62935e-06
MA0148.10.880184
MA0149.10.00688097
MA0062.21.01603e-07
MA0035.20.787916
MA0039.20
MA0138.20.784662
MA0002.20.449825
MA0137.20.0500672
MA0104.22.27184e-07
MA0047.21.49726
MA0112.21.37834
MA0065.21.78212
MA0150.10.573158
MA0151.10
MA0152.10.167133
MA0153.10.486962
MA0154.12.99544
MA0155.10.040473
MA0156.10.000191899
MA0157.10.57972
MA0158.10
MA0159.10.546763
MA0160.12.40899
MA0161.10
MA0162.10
MA0163.12.17567e-06
MA0164.12.25707
MA0080.22.03597e-05
MA0018.20.00973111
MA0099.20.383474
MA0079.20
MA0102.20.0673613
MA0258.13.67356
MA0259.10.000933394
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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