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{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.861331819568795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|full_id=C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic|gostat_on_coexpression_clusters=GO:0043565!sequence-specific DNA binding!0.00984692052000621!3221;5452;8929;5015;7068$GO:0032501!multicellular organismal process!0.0184043811554295!3221;6252;8929;5132;5015;4281;29947;7068$GO:0007275!multicellular organismal development!0.0208285303637392!3221;6252;8929;5015;4281;29947$GO:0042706!eye photoreceptor cell fate commitment!0.0208285303637392!5015$GO:0046552!photoreceptor cell fate commitment!0.0208285303637392!5015$GO:0003700!transcription factor activity!0.0208285303637392!3221;5452;8929;5015;7068$GO:0040036!regulation of fibroblast growth factor receptor signaling pathway!0.0434788203863315!5015$GO:0007389!pattern specification process!0.0434788203863315!5015;4281$GO:0003828!alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity!0.0434788203863315!6489$GO:0031301!integral to organelle membrane!0.0434788203863315!6252;6489$GO:0043231!intracellular membrane-bound organelle!0.0434788203863315!64328;84647;3221;6252;5452;8929;29947;5015;6489;7068$GO:0043227!membrane-bound organelle!0.0434788203863315!64328;84647;3221;6252;5452;8929;29947;5015;6489;7068$GO:0031300!intrinsic to organelle membrane!0.0434788203863315!6252;6489$GO:0008190!eukaryotic initiation factor 4E binding!0.0434788203863315!5015$GO:0031369!translation initiation factor binding!0.0434788203863315!5015$GO:0006349!genetic imprinting!0.0434788203863315!29947$GO:0032502!developmental process!0.0434788203863315!3221;6252;8929;5015;4281;29947$GO:0008589!regulation of smoothened signaling pathway!0.0434788203863315!5015$GO:0001754!eye photoreceptor cell differentiation!0.0434788203863315!5015$GO:0043229!intracellular organelle!0.0434788203863315!64328;84647;3221;6252;5452;8929;4281;29947;5015;6489;7068$GO:0043226!organelle!0.0434788203863315!64328;84647;3221;6252;5452;8929;4281;29947;5015;6489;7068$GO:0030901!midbrain development!0.0434788203863315!5015$GO:0007399!nervous system development!0.0434788203863315!6252;8929;5015$GO:0030182!neuron differentiation!0.0434788203863315!6252;5015$GO:0016564!transcription repressor activity!0.0434788203863315!29947;7068$GO:0006688!glycosphingolipid biosynthetic process!0.0434788203863315!6489$GO:0046530!photoreceptor cell differentiation!0.0434788203863315!5015$GO:0004887!thyroid hormone receptor activity!0.0434788203863315!7068$GO:0009790!embryonic development!0.0459553101092688!5015;29947$GO:0044424!intracellular part!0.0459553101092688!64328;84647;3221;6252;5452;8929;4281;5132;29947;5015;6489;7068$GO:0005720!nuclear heterochromatin!0.0459553101092688!29947$GO:0048699!generation of neurons!0.0459553101092688!6252;5015$GO:0010468!regulation of gene expression!0.0472670367834421!3221;5452;8929;5015;29947;7068$GO:0007224!smoothened signaling pathway!0.0472670367834421!5015$GO:0048663!neuron fate commitment!0.0472670367834421!5015$GO:0022008!neurogenesis!0.0472670367834421!6252;5015$GO:0009247!glycolipid biosynthetic process!0.0472670367834421!6489$GO:0001708!cell fate specification!0.0472670367834421!5015$GO:0006643!membrane lipid metabolic process!0.0472670367834421!84647;6489$GO:0008543!fibroblast growth factor receptor signaling pathway!0.048631848475914!5015|id=C89|ontology_enrichment_celltype=CL:0000082!6.95e-12!19|ontology_enrichment_disease=DOID:5409!3.10e-50!4;DOID:1325!1.78e-29!7;DOID:3904!1.78e-29!7;DOID:3905!2.62e-23!9;DOID:1324!1.22e-14!15;DOID:0050615!8.02e-14!16|ontology_enrichment_uberon=UBERON:0004802!6.95e-12!19;UBERON:0000115!6.95e-12!19;UBERON:0002048!1.80e-10!22;UBERON:0000117!1.80e-10!22;UBERON:0000171!1.80e-10!22;UBERON:0000170!1.80e-10!22;UBERON:0005597!1.80e-10!22;UBERON:0000118!1.80e-10!22;UBERON:0004807!1.52e-08!28;UBERON:0005178!2.74e-07!34;UBERON:0002224!2.74e-07!34;UBERON:0005181!4.03e-07!35;UBERON:0005153!8.21e-07!37|pathway_enrichment=7.83036217125079e-05;0.0495661925440175;2;21;{POU2F1,21} (Static 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169,0.012012,0.120446,0.885573,0.000197653,0.0703812,0.000269693,0.117042,0.00283235,0.00629795,0.0168556,0.0858886,0.0128313,0.108138,8.03443e-05,0.0175106,4.3066e-06,0.00853807,0.256146,0.0043512,0.860761,0.00494382,0.00383678,1.06869,6.55962e-06,0.0195405,0.00363158,0.00920355,0.0384709,0.196217,0.0129963,0.0755678,0.0641525,0.0111069,0.142487,0.0576031,1.57636,0.0056816,0.0152613,0.198015,0.041061,0.00379314,0.389053,0.0489551,0.149809,0.295758,0.471496,0.238552,0.511072,0.44497,0.00355668,1.01181,6.5984e-11,0.328949,1.11258e-07,0.0266237,0.0437793,0.012121,4.57747,1.68225,0.485592,0.561843,6.26392,0.516028,0.106048,8.87181e-15,0.000426889,0.0515954,0.0498839,0.824167,0.0932301,0.0899823,0.209849,1.20609,9.70579e-08,0.172374,0.287809,0.468599,0.000672241,0.107852,0.262731,0.0316847,0.127365,0.450142,0.0304477,0.000282648,0.00285287,0.168682,0.000749586,1.3376e-05,0.0705686,0.124988,0.17624,0.0303432,0.0748914,0.374784,1.69151e-10,0.0335981,0.0336679,0.945527,0.578009,0.104432,0.894498,0.747279,0.382786,0.734986,0.411485,0.0348439,0.676938,0.299454,1.03653,2.12754,0.402882,0.946041,0.324832,0.0522414,0.00631057,0.849904,0.0816722,0.674484,0.908734,0.886012,0.756244,0.460334,0.158388,0.00481449,1.64653,1.32673,0.482514,6.25795e-05,2.10901e-06,0,1.42698,0.0117431,1.01466,0.160902,0.280162,0.437903,0.0491921,0.000296865,0.239922,0.205156,0.00433677,0.0292069,0.478631,0.360311,0.000583641,0.0633,8.67413e-14|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.326933,MA0006.1;2.61856e-05,MA0007.1;0.000960403,MA0009.1;0.353826,MA0014.1;9.64327e-17,MA0017.1;0.433671,MA0019.1;0.450897,MA0024.1;0.0292941,MA0025.1;0.351282,MA0027.1;1.12503,MA0028.1;0.000201985,MA0029.1;0.60442,MA0030.1;1.13361,MA0031.1;0.841217,MA0038.1;1.81779,MA0040.1;0.397513,MA0041.1;1.29871,MA0042.1;1.98455,MA0043.1;0.014704,MA0046.1;0.847358,MA0048.1;3.23839e-05,MA0050.1;0.392157,MA0051.1;1.2248,MA0052.1;0.406039,MA0055.1;2.40918e-05,MA0056.1;0,MA0057.1;0.000562244,MA0058.1;0.728083,MA0059.1;2.15672,MA0060.1;0.0581586,MA0061.1;0.00475581,MA0063.1;0,MA0066.1;0.0124814,MA0067.1;0.100054,MA0068.1;0.940727,MA0069.1;0.552055,MA0070.1;0.795515,MA0071.1;0.595071,MA0072.1;0.512479,MA0073.1;2.38952e-06,MA0074.1;0.0293712,MA0076.1;2.91025e-05,MA0077.1;1.06756,MA0078.1;0.299953,MA0081.1;0.0293556,MA0083.1;0.91254,MA0084.1;0.195311,MA0087.1;0.772052,MA0088.1;0.00528169,MA0089.1;0,MA0090.1;0.141801,MA0091.1;11.6492,MA0092.1;0.540648,MA0093.1;0.661791,MA0095.1;0,MA0098.1;0,MA0100.1;0.00481682,MA0101.1;0.0130326,MA0103.1;0.208057,MA0105.1;0.000163305,MA0106.1;0.00763234,MA0107.1;0.0836295,MA0108.2;0.828245,MA0109.1;0,MA0111.1;0.0706075,MA0113.1;0.128597,MA0114.1;0.00323535,MA0115.1;0.247618,MA0116.1;5.15274e-05,MA0117.1;0.0883646,MA0119.1;1.06884,MA0122.1;0.477009,MA0124.1;0.456929,MA0125.1;2.86517,MA0130.1;0,MA0131.1;0.005523,MA0132.1;0,MA0133.1;0,MA0135.1;11.3665,MA0136.1;0.0138936,MA0139.1;5.26682e-08,MA0140.1;0.128276,MA0141.1;1.87913,MA0142.1;0.0958363,MA0143.1;1.14559,MA0144.1;0.000782779,MA0145.1;7.16618e-05,MA0146.1;1.94443e-11,MA0147.1;0.0995859,MA0148.1;1.60873,MA0149.1;0.00132083,MA0062.2;4.1554e-07,MA0035.2;0.578897,MA0039.2;1.7112e-13,MA0138.2;0.100576,MA0002.2;0.10886,MA0137.2;0.0202617,MA0104.2;0.0567274,MA0047.2;2.10866,MA0112.2;3.02397e-07,MA0065.2;0.000184214,MA0150.1;0.129421,MA0151.1;0,MA0152.1;0.457147,MA0153.1;0.300995,MA0154.1;0.00345022,MA0155.1;0.000816618,MA0156.1;0.000285078,MA0157.1;0.26429,MA0158.1;0,MA0159.1;0.71947,MA0160.1;0.246027,MA0161.1;0,MA0162.1;1.33766e-06,MA0163.1;8.26512e-10,MA0164.1;1.22633,MA0080.2;0.000117894,MA0018.2;0.0236283,MA0099.2;0.458571,MA0079.2;0,MA0102.2;0.217756,MA0258.1;0.00439999,MA0259.1;0.0228625,MA0442.1;0}}
|full_id=C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic
|id=C89
}}

Latest revision as of 10:28, 17 September 2013


Full id: C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic



Phase1 CAGE Peaks

Hg19::chr10:113190125..113190134,+p@chr10:113190125..113190134
+
Hg19::chr10:129346546..129346561,+p@chr10:129346546..129346561
+
Hg19::chr10:61515407..61515414,-p@chr10:61515407..61515414
-
Hg19::chr10:72370054..72370064,+p1@ENST00000500803
Hg19::chr10:74714458..74714477,-p3@PLA2G12B
Hg19::chr10:74714487..74714498,-p4@PLA2G12B
Hg19::chr11:111364948..111364961,-p@chr11:111364948..111364961
-
Hg19::chr11:20538015..20538023,-p@chr11:20538015..20538023
-
Hg19::chr11:73475071..73475076,-p@chr11:73475071..73475076
-
Hg19::chr11:95994394..95994403,+p@chr11:95994394..95994403
+
Hg19::chr11:98528704..98528712,+p@chr11:98528704..98528712
+
Hg19::chr12:133040060..133040064,+p@chr12:133040060..133040064
+
Hg19::chr12:22421536..22421552,-p4@ST8SIA1
Hg19::chr12:54431666..54431676,+p16@HOXC4
Hg19::chr12:54431694..54431704,+p17@HOXC4
Hg19::chr12:54431720..54431732,+p13@HOXC4
Hg19::chr12:54567359..54567401,-p@chr12:54567359..54567401
-
Hg19::chr13:21477124..21477144,-p3@XPO4
Hg19::chr13:26155734..26155742,+p@chr13:26155734..26155742
+
Hg19::chr13:76481510..76481517,+p@chr13:76481510..76481517
+
Hg19::chr13:76515062..76515068,+p@chr13:76515062..76515068
+
Hg19::chr13:76549637..76549662,+p@chr13:76549637..76549662
+
Hg19::chr13:76554315..76554319,+p@chr13:76554315..76554319
+
Hg19::chr13:76563913..76563916,+p@chr13:76563913..76563916
+
Hg19::chr13:76688920..76688924,+p@chr13:76688920..76688924
+
Hg19::chr13:76694533..76694542,+p@chr13:76694533..76694542
+
Hg19::chr13:76755731..76755739,+p@chr13:76755731..76755739
+
Hg19::chr13:93957776..93957797,+p@chr13:93957776..93957797
+
Hg19::chr13:95133267..95133279,-p@chr13:95133267..95133279
-
Hg19::chr13:95133382..95133389,-p@chr13:95133382..95133389
-
Hg19::chr14:23835464..23835478,-p@chr14:23835464..23835478
-
Hg19::chr14:32684998..32685005,+p@chr14:32684998..32685005
+
Hg19::chr14:32685029..32685039,+p@chr14:32685029..32685039
+
Hg19::chr14:32685046..32685057,+p@chr14:32685046..32685057
+
Hg19::chr14:56584414..56584464,+p18@PELI2
Hg19::chr14:57273996..57274007,-p@chr14:57273996..57274007
-
Hg19::chr14:57274753..57274759,-p@chr14:57274753..57274759
-
Hg19::chr14:57277357..57277384,-p5@OTX2
Hg19::chr14:57283471..57283510,-p@chr14:57283471..57283510
-
Hg19::chr14:58045730..58045732,-p@chr14:58045730..58045732
-
Hg19::chr14:58045800..58045814,-p@chr14:58045800..58045814
-
Hg19::chr14:58264837..58264840,-p@chr14:58264837..58264840
-
Hg19::chr14:58331575..58331582,-p@chr14:58331575..58331582
-
Hg19::chr14:58331678..58331725,-p@chr14:58331678..58331725
-
Hg19::chr14:58332762..58332773,-p5@SLC35F4
Hg19::chr14:58332774..58332786,-p4@SLC35F4
Hg19::chr14:58332793..58332817,-p1@SLC35F4
Hg19::chr14:58415850..58415853,-p@chr14:58415850..58415853
-
Hg19::chr14:58439259..58439262,-p@chr14:58439259..58439262
-
Hg19::chr14:58448696..58448733,-p9@SLC35F4
Hg19::chr14:58449672..58449684,-p@chr14:58449672..58449684
-
Hg19::chr14:58449882..58449909,-p@chr14:58449882..58449909
-
Hg19::chr14:59113338..59113345,+p@chr14:59113338..59113345
+
Hg19::chr14:59113347..59113360,+p@chr14:59113347..59113360
+
Hg19::chr14:59132994..59133018,+p@chr14:59132994..59133018
+
Hg19::chr14:60194043..60194066,-p18@RTN1
Hg19::chr14:60194070..60194083,-p25@RTN1
Hg19::chr14:60194267..60194275,-p20@RTN1
Hg19::chr14:60194285..60194311,-p10@RTN1
Hg19::chr14:60194318..60194325,-p22@RTN1
Hg19::chr14:60194331..60194336,-p36@RTN1
Hg19::chr14:60194347..60194365,-p17@RTN1
Hg19::chr14:60194368..60194387,-p11@RTN1
Hg19::chr14:60194446..60194457,-p16@RTN1
Hg19::chr14:60194459..60194462,-p43@RTN1
Hg19::chr14:60958049..60958051,-p@chr14:60958049..60958051
-
Hg19::chr14:73807668..73807689,+p@chr14:73807668..73807689
+
Hg19::chr14:83609315..83609322,-p@chr14:83609315..83609322
-
Hg19::chr15:48312676..48312679,+p@chr15:48312676..48312679
+
Hg19::chr15:63578231..63578240,+p@chr15:63578231..63578240
+
Hg19::chr15:66386837..66386846,-p@chr15:66386837..66386846
-
Hg19::chr15:85564362..85564385,+p@chr15:85564362..85564385
+
Hg19::chr16:13010455..13010466,+p@chr16:13010455..13010466
+
Hg19::chr16:13010527..13010543,+p@chr16:13010527..13010543
+
Hg19::chr16:13010548..13010555,+p@chr16:13010548..13010555
+
Hg19::chr16:13010571..13010578,+p@chr16:13010571..13010578
+
Hg19::chr16:13010590..13010593,+p@chr16:13010590..13010593
+
Hg19::chr16:72029085..72029092,-p@chr16:72029085..72029092
-
Hg19::chr16:7411388..7411391,+p@chr16:7411388..7411391
+
Hg19::chr17:1944790..1944809,+p4@OVCA2
Hg19::chr17:20771531..20771548,-p1@CCDC144NL
Hg19::chr17:20771796..20771807,+p2@ENST00000439794
Hg19::chr17:20771833..20771846,+p1@ENST00000439794
Hg19::chr17:20807198..20807204,+p@chr17:20807198..20807204
+
Hg19::chr17:70939741..70939790,-p@chr17:70939741..70939790
-
Hg19::chr17:70940275..70940283,+p@chr17:70940275..70940283
+
Hg19::chr17:7111644..7111669,-p@chr17:7111644..7111669
-
Hg19::chr17:9725394..9725400,-p1@ENST00000399363
Hg19::chr18:22212559..22212569,+p@chr18:22212559..22212569
+
Hg19::chr18:55780205..55780223,+p@chr18:55780205..55780223
+
Hg19::chr18:6928495..6928520,-p2@LOC400643
Hg19::chr19:42600094..42600110,-p11@POU2F2
Hg19::chr19:44057957..44057961,-p@chr19:44057957..44057961
-
Hg19::chr19:50323482..50323485,-p@chr19:50323482..50323485
-
Hg19::chr19:7834829..7834834,+p@chr19:7834829..7834834
+
Hg19::chr1:100110807..100110818,+p@chr1:100110807..100110818
+
Hg19::chr1:100110851..100110860,+p@chr1:100110851..100110860
+
Hg19::chr1:11640241..11640246,-p@chr1:11640241..11640246
-
Hg19::chr1:179139285..179139296,-p@chr1:179139285..179139296
-
Hg19::chr1:186430270..186430273,-p2@PDC
Hg19::chr1:211660689..211660695,+p@chr1:211660689..211660695
+
Hg19::chr1:223670577..223670594,+p@chr1:223670577..223670594
+
Hg19::chr1:234816066..234816079,+p@chr1:234816066..234816079
+
Hg19::chr1:33705218..33705225,-p@chr1:33705218..33705225
-
Hg19::chr1:50570200..50570209,+p@chr1:50570200..50570209
+
Hg19::chr20:13085064..13085070,+p@chr20:13085064..13085070
+
Hg19::chr20:33293061..33293072,+p@chr20:33293061..33293072
+
Hg19::chr20:33293077..33293086,+p@chr20:33293077..33293086
+
Hg19::chr20:43324746..43324769,-p1@ENST00000415889
Hg19::chr20:45418126..45418131,-p@chr20:45418126..45418131
-
Hg19::chr20:45434137..45434157,-p@chr20:45434137..45434157
-
Hg19::chr20:54085022..54085026,+p@chr20:54085022..54085026
+
Hg19::chr20:54101133..54101144,+p@chr20:54101133..54101144
+
Hg19::chr21:45682336..45682380,-p5@DNMT3L
Hg19::chr2:138685510..138685520,-p@chr2:138685510..138685520
-
Hg19::chr2:171217277..171217289,+p@chr2:171217277..171217289
+
Hg19::chr2:171217290..171217297,+p@chr2:171217290..171217297
+
Hg19::chr2:194837773..194837784,-p@chr2:194837773..194837784
-
Hg19::chr2:202413051..202413061,-p@chr2:202413051..202413061
-
Hg19::chr2:211532710..211532719,+p@chr2:211532710..211532719
+
Hg19::chr2:215345586..215345590,-p@chr2:215345586..215345590
-
Hg19::chr2:238760492..238760502,+p@chr2:238760492..238760502
+
Hg19::chr2:45168589..45168601,-p2@ENST00000456467
Hg19::chr2:45168633..45168642,-p3@ENST00000456467
Hg19::chr2:48274495..48274509,+p@chr2:48274495..48274509
+
Hg19::chr2:51255337..51255346,+p@chr2:51255337..51255346
+
Hg19::chr2:51255348..51255351,+p@chr2:51255348..51255351
+
Hg19::chr2:55932549..55932580,+p@chr2:55932549..55932580
+
Hg19::chr2:56179262..56179285,+p1@uc002rzk.2
Hg19::chr2:68113370..68113379,-p@chr2:68113370..68113379
-
Hg19::chr2:74740360..74740369,-p@chr2:74740360..74740369
-
Hg19::chr2:8803669..8803680,-p@chr2:8803669..8803680
-
Hg19::chr3:1991867..1991875,-p@chr3:1991867..1991875
-
Hg19::chr3:24206925..24206928,-p29@THRB
Hg19::chr3:24206971..24206999,-p8@THRB
Hg19::chr3:24207018..24207024,-p22@THRB
Hg19::chr3:24207029..24207032,-p37@THRB
Hg19::chr3:24207039..24207050,-p16@THRB
Hg19::chr3:24207220..24207235,-p18@THRB
Hg19::chr3:77129779..77129782,+p@chr3:77129779..77129782
+
Hg19::chr4:169849979..169849990,-p@chr4:169849979..169849990
-
Hg19::chr4:178653531..178653568,+p@chr4:178653531..178653568
+
Hg19::chr4:41749788..41749795,-p10@PHOX2B
Hg19::chr4:41750020..41750029,-p9@PHOX2B
Hg19::chr5:133179082..133179101,-p@chr5:133179082..133179101
-
Hg19::chr5:133191186..133191195,-p6@FSTL4
Hg19::chr5:151338426..151338430,+p1@ENST00000524034
Hg19::chr5:57935348..57935354,-p@chr5:57935348..57935354
-
Hg19::chr5:6961030..6961034,+p@chr5:6961030..6961034
+
Hg19::chr6:125378873..125378876,+p@chr6:125378873..125378876
+
Hg19::chr6:125378908..125378919,+p@chr6:125378908..125378919
+
Hg19::chr6:14592435..14592475,+p@chr6:14592435..14592475
+
Hg19::chr6:17845348..17845358,-p@chr6:17845348..17845358
-
Hg19::chr6:24539757..24539763,-p@chr6:24539757..24539763
-
Hg19::chr6:24539768..24539782,-p@chr6:24539768..24539782
-
Hg19::chr6:44681761..44681769,-p@chr6:44681761..44681769
-
Hg19::chr6:5555405..5555407,+p@chr6:5555405..5555407
+
Hg19::chr7:107369031..107369037,-p@chr7:107369031..107369037
-
Hg19::chr7:111234799..111234807,-p@chr7:111234799..111234807
-
Hg19::chr7:39018314..39018323,+p@chr7:39018314..39018323
+
Hg19::chr7:39018325..39018336,+p@chr7:39018325..39018336
+
Hg19::chr7:7749088..7749127,+p@chr7:7749088..7749127
+
Hg19::chr8:128311072..128311082,-p@chr8:128311072..128311082
-
Hg19::chr8:128658112..128658115,-p@chr8:128658112..128658115
-
Hg19::chr8:128658139..128658148,-p@chr8:128658139..128658148
-
Hg19::chr8:139194385..139194397,-p@chr8:139194385..139194397
-
Hg19::chr8:139510692..139510697,-p@chr8:139510692..139510697
-
Hg19::chr8:20917459..20917465,-p@chr8:20917459..20917465
-
Hg19::chr8:72252453..72252458,-p@chr8:72252453..72252458
-
Hg19::chr8:97961177..97961185,-p@chr8:97961177..97961185
-
Hg19::chr8:97961449..97961460,-p@chr8:97961449..97961460
-
Hg19::chr8:97961686..97961696,-p@chr8:97961686..97961696
-
Hg19::chr8:97962018..97962029,-p@chr8:97962018..97962029
-
Hg19::chr8:97964849..97964868,-p@chr8:97964849..97964868
-
Hg19::chr8:97965705..97965721,-p@chr8:97965705..97965721
-
Hg19::chr8:97972117..97972120,-p@chr8:97972117..97972120
-
Hg19::chr8:98014001..98014041,-p@chr8:98014001..98014041
-
Hg19::chr8:98015305..98015315,-p@chr8:98015305..98015315
-
Hg19::chr8:98015616..98015617,-p@chr8:98015616..98015617
-
Hg19::chr8:98015654..98015697,-p@chr8:98015654..98015697
-
Hg19::chr8:98043381..98043387,-p@chr8:98043381..98043387
-
Hg19::chr8:98051049..98051058,-p@chr8:98051049..98051058
-
Hg19::chr8:98065877..98065881,-p@chr8:98065877..98065881
-
Hg19::chr8:98066259..98066270,-p@chr8:98066259..98066270
-
Hg19::chr8:98070371..98070384,-p@chr8:98070371..98070384
-
Hg19::chr8:98073725..98073731,-p@chr8:98073725..98073731
-
Hg19::chr8:98075951..98075959,-p@chr8:98075951..98075959
-
Hg19::chr8:98080543..98080550,-p@chr8:98080543..98080550
-
Hg19::chr8:98103977..98103981,-p@chr8:98103977..98103981
-
Hg19::chr8:98104439..98104444,-p@chr8:98104439..98104444
-
Hg19::chr8:98108427..98108430,-p@chr8:98108427..98108430
-
Hg19::chr8:98108435..98108438,-p@chr8:98108435..98108438
-
Hg19::chr9:101928133..101928155,+p@chr9:101928133..101928155
+
Hg19::chr9:125306070..125306106,+p@chr9:125306070..125306106
+
Hg19::chr9:17454025..17454033,+p@chr9:17454025..17454033
+
Hg19::chr9:17454052..17454060,+p@chr9:17454052..17454060
+
Hg19::chr9:17454062..17454088,+p@chr9:17454062..17454088
+
Hg19::chr9:17457123..17457129,+p@chr9:17457123..17457129
+
Hg19::chr9:226208..226216,-p@chr9:226208..226216
-
Hg19::chr9:33677441..33677472,+p@chr9:33677441..33677472
+
Hg19::chrX:10852011..10852021,-p27@MID1
Hg19::chrX:114606584..114606590,+p@chrX:114606584..114606590
+
Hg19::chrX:135761733..135761754,-p@chrX:135761733..135761754
-
Hg19::chrX:135761770..135761786,-p@chrX:135761770..135761786
-
Hg19::chrX:135761795..135761849,-p@chrX:135761795..135761849
-
Hg19::chrX:135761853..135761876,-p@chrX:135761853..135761876
-
Hg19::chrX:135761931..135761934,-p@chrX:135761931..135761934
-
Hg19::chrX:135764624..135764645,-p@chrX:135764624..135764645
-
Hg19::chrX:48394285..48394295,+p@chrX:48394285..48394295
+
Hg19::chrX:64917108..64917119,+p@chrX:64917108..64917119
+
Hg19::chrX:64917135..64917146,+p@chrX:64917135..64917146
+
Hg19::chrX:97443927..97443947,+p@chrX:97443927..97443947
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
7.83036217125079e-050.0495661925440175221{POU2F1,21} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0043565sequence-specific DNA binding0.00984692052000621
GO:0032501multicellular organismal process0.0184043811554295
GO:0007275multicellular organismal development0.0208285303637392
GO:0042706eye photoreceptor cell fate commitment0.0208285303637392
GO:0046552photoreceptor cell fate commitment0.0208285303637392
GO:0003700transcription factor activity0.0208285303637392
GO:0040036regulation of fibroblast growth factor receptor signaling pathway0.0434788203863315
GO:0007389pattern specification process0.0434788203863315
GO:0003828alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity0.0434788203863315
GO:0031301integral to organelle membrane0.0434788203863315
GO:0043231intracellular membrane-bound organelle0.0434788203863315
GO:0043227membrane-bound organelle0.0434788203863315
GO:0031300intrinsic to organelle membrane0.0434788203863315
GO:0008190eukaryotic initiation factor 4E binding0.0434788203863315
GO:0031369translation initiation factor binding0.0434788203863315
GO:0006349genetic imprinting0.0434788203863315
GO:0032502developmental process0.0434788203863315
GO:0008589regulation of smoothened signaling pathway0.0434788203863315
GO:0001754eye photoreceptor cell differentiation0.0434788203863315
GO:0043229intracellular organelle0.0434788203863315
GO:0043226organelle0.0434788203863315
GO:0030901midbrain development0.0434788203863315
GO:0007399nervous system development0.0434788203863315
GO:0030182neuron differentiation0.0434788203863315
GO:0016564transcription repressor activity0.0434788203863315
GO:0006688glycosphingolipid biosynthetic process0.0434788203863315
GO:0046530photoreceptor cell differentiation0.0434788203863315
GO:0004887thyroid hormone receptor activity0.0434788203863315
GO:0009790embryonic development0.0459553101092688
GO:0044424intracellular part0.0459553101092688
GO:0005720nuclear heterochromatin0.0459553101092688
GO:0048699generation of neurons0.0459553101092688
GO:0010468regulation of gene expression0.0472670367834421
GO:0007224smoothened signaling pathway0.0472670367834421
GO:0048663neuron fate commitment0.0472670367834421
GO:0022008neurogenesis0.0472670367834421
GO:0009247glycolipid biosynthetic process0.0472670367834421
GO:0001708cell fate specification0.0472670367834421
GO:0006643membrane lipid metabolic process0.0472670367834421
GO:0008543fibroblast growth factor receptor signaling pathway0.048631848475914



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
epithelial cell of lung6.95e-1219
Uber Anatomy
Ontology termp-valuen
respiratory tract epithelium6.95e-1219
lung epithelium6.95e-1219
lung1.80e-1022
respiratory tube1.80e-1022
respiration organ1.80e-1022
pair of lungs1.80e-1022
lung primordium1.80e-1022
lung bud1.80e-1022
respiratory system epithelium1.52e-0828
thoracic cavity element2.74e-0734
thoracic cavity2.74e-0734
thoracic segment organ4.03e-0735
epithelial bud8.21e-0737
Disease
Ontology termp-valuen
lung small cell carcinoma3.10e-504
bronchus cancer1.78e-297
bronchogenic carcinoma1.78e-297
lung carcinoma2.62e-239
lung cancer1.22e-1415
respiratory system cancer8.02e-1416


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.326933
MA0006.12.61856e-05
MA0007.10.000960403
MA0009.10.353826
MA0014.19.64327e-17
MA0017.10.433671
MA0019.10.450897
MA0024.10.0292941
MA0025.10.351282
MA0027.11.12503
MA0028.10.000201985
MA0029.10.60442
MA0030.11.13361
MA0031.10.841217
MA0038.11.81779
MA0040.10.397513
MA0041.11.29871
MA0042.11.98455
MA0043.10.014704
MA0046.10.847358
MA0048.13.23839e-05
MA0050.10.392157
MA0051.11.2248
MA0052.10.406039
MA0055.12.40918e-05
MA0056.10
MA0057.10.000562244
MA0058.10.728083
MA0059.12.15672
MA0060.10.0581586
MA0061.10.00475581
MA0063.10
MA0066.10.0124814
MA0067.10.100054
MA0068.10.940727
MA0069.10.552055
MA0070.10.795515
MA0071.10.595071
MA0072.10.512479
MA0073.12.38952e-06
MA0074.10.0293712
MA0076.12.91025e-05
MA0077.11.06756
MA0078.10.299953
MA0081.10.0293556
MA0083.10.91254
MA0084.10.195311
MA0087.10.772052
MA0088.10.00528169
MA0089.10
MA0090.10.141801
MA0091.111.6492
MA0092.10.540648
MA0093.10.661791
MA0095.10
MA0098.10
MA0100.10.00481682
MA0101.10.0130326
MA0103.10.208057
MA0105.10.000163305
MA0106.10.00763234
MA0107.10.0836295
MA0108.20.828245
MA0109.10
MA0111.10.0706075
MA0113.10.128597
MA0114.10.00323535
MA0115.10.247618
MA0116.15.15274e-05
MA0117.10.0883646
MA0119.11.06884
MA0122.10.477009
MA0124.10.456929
MA0125.12.86517
MA0130.10
MA0131.10.005523
MA0132.10
MA0133.10
MA0135.111.3665
MA0136.10.0138936
MA0139.15.26682e-08
MA0140.10.128276
MA0141.11.87913
MA0142.10.0958363
MA0143.11.14559
MA0144.10.000782779
MA0145.17.16618e-05
MA0146.11.94443e-11
MA0147.10.0995859
MA0148.11.60873
MA0149.10.00132083
MA0062.24.1554e-07
MA0035.20.578897
MA0039.21.7112e-13
MA0138.20.100576
MA0002.20.10886
MA0137.20.0202617
MA0104.20.0567274
MA0047.22.10866
MA0112.23.02397e-07
MA0065.20.000184214
MA0150.10.129421
MA0151.10
MA0152.10.457147
MA0153.10.300995
MA0154.10.00345022
MA0155.10.000816618
MA0156.10.000285078
MA0157.10.26429
MA0158.10
MA0159.10.71947
MA0160.10.246027
MA0161.10
MA0162.11.33766e-06
MA0163.18.26512e-10
MA0164.11.22633
MA0080.20.000117894
MA0018.20.0236283
MA0099.20.458571
MA0079.20
MA0102.20.217756
MA0258.10.00439999
MA0259.10.0228625
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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