FFCP PHASE1:Hg19::chr20:56226990..56227003,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:56226990..56227003,- | |||
|description=CAGE_peak_at_chr20:56226990..56227003,- | |description=CAGE_peak_at_chr20:56226990..56227003,- | ||
|id=chr20:56226990..56227003,- | |id=chr20:56226990..56227003,- | ||
|ontology_enrichment_celltype=CL:0000066!3.10e-13!254;CL:0002076!6.58e-10!43;CL:0000223!2.22e-07!59 | |ontology_enrichment_celltype=CL:0000066!3.10e-13!254;CL:0002076!6.58e-10!43;CL:0000223!2.22e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000244;6.19e-11;4!CL:0000731;6.19e-11;4!CL:1000507;1.34e-10;10!CL:1000494;1.34e-10;10!CL:1000497;1.81e-09;17!CL:0002518;1.81e-09;17!CL:1000449;8.67e-09;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,5.93e-11,4;CL:0000731,5.93e-11,4;CL:1000507,3.05e-10,10;CL:1000494,3.05e-10,10;CL:1000497,2.99e-09,17;CL:0002518,2.99e-09,17;CL:0000066,1.34e-08,253;CL:1000449,1.58e-08,15;CL:0000223,3.90e-08,58;CL:0002076,1.57e-07,42;CL:0002149,7.51e-07,6;CL:0002255,7.51e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:3001,7.51e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000468!4.35e-10!659;UBERON:0000062!5.48e-10!511;UBERON:0000922!4.33e-08!612;UBERON:0000480!7.37e-08!626;UBERON:0000467!9.24e-08!625;UBERON:0002050!1.28e-07!605;UBERON:0005423!1.28e-07!605;UBERON:0000923!2.53e-07!604;UBERON:0005291!2.53e-07!604;UBERON:0006598!2.53e-07!604;UBERON:0002532!2.53e-07!604 | |ontology_enrichment_uberon=UBERON:0000468!4.35e-10!659;UBERON:0000062!5.48e-10!511;UBERON:0000922!4.33e-08!612;UBERON:0000480!7.37e-08!626;UBERON:0000467!9.24e-08!625;UBERON:0002050!1.28e-07!605;UBERON:0005423!1.28e-07!605;UBERON:0000923!2.53e-07!604;UBERON:0005291!2.53e-07!604;UBERON:0006598!2.53e-07!604;UBERON:0002532!2.53e-07!604 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.34e-10;10!UBERON:0009773;1.34e-10;10!UBERON:0001231;1.34e-10;10!UBERON:0004810;1.34e-10;10!UBERON:0006554;1.62e-10;30!UBERON:0001008;1.62e-10;30!UBERON:0002394;1.42e-09;4!UBERON:0003928;1.42e-09;4!UBERON:0006555;8.67e-09;15!UBERON:0004819;8.67e-09;15!UBERON:0001285;8.67e-09;15!UBERON:0007684;8.67e-09;15!UBERON:0000365;1.04e-08;5!UBERON:0002294;5.87e-08;7!UBERON:0001173;5.87e-08;7!UBERON:0005910;3.20e-07;6!UBERON:0000486;6.43e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,3.05e-10,10;UBERON:0000365,1.01e-08,5;UBERON:0004211,1.58e-08,15;UBERON:0009773,1.58e-08,15;UBERON:0001231,1.58e-08,15;UBERON:0001285,1.58e-08,15;UBERON:0007684,1.58e-08,15;UBERON:0004208,1.58e-08,15;UBERON:0006555,6.71e-08,16;UBERON:0004819,6.71e-08,16;UBERON:0006554,1.28e-07,47;UBERON:0001008,2.19e-07,48;UBERON:0005910,3.11e-07,6 | |||
|phase1_expression=0.726713517082227,2.14100523890983,0.704772020479856,1.0007329835313,0.446961094427288,0.872338524100369,0,0,0,1.22866968250754,3.48900583986214,1.52908960491121,1.58260186937072,0,0,0.672325146451775,0,0,0,0.492484232307152,1.02000345622126,0,0.85870796139317,2.6006140763848,1.25542639594803,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0.145398238779565,1.51150377475524,0,0.929716147622738,0.822335776043652,0,0,0.768482119587302,0.236482229888585,0,0,1.35426486594342,1.31769637679823,1.36453075028923,0,2.14258724659632,0.962787081228281,0.639337125799041,0,0.398927315243264,0,1.45104619314292,1.70215567407342,0,0.251248665256743,0.521482918420201,0.217188844705117,0.605399502633369,2.20966581592539,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.434539556882471,1.5905718941022,7.29952305453954,1.03988298880475,0.665188192387692,0.790513071238134,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0.550236083880135,0.835979866147242,0,0,0,0,0,0,1.10298924103761,0.81014194788176,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,1.06748995729705,1.48000529050296,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0,0,0,0,0.30648779579902,0.300476117813194,0.113432183160021,0,0.213557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0.772921620136887,0.18611685633159,0,0.292311015483596,0,0.0920498986422993,0,0,0.10075209822764,0,1.35282597214308,2.18196896472668,0.860413786167011,0.487894824518382,0.132529768321485,0,0.207322110030741,0.252320850875628,0.36497735907583,0,0,0,0,0,0.473227200159376,0.337169380156203,0.723033089650446,0.441175890929576,0.653638332277218,0.474541238222193,0,0.392442930250692,0,0,0,0,0,1.26755034821831,0,0,0.441463099414651,0.368965315629341,0.343135620597051,1.97550513735526,0,0.804231779293047,0.0925884451585296,0,0,0,1.15930404975077,0.117408694235822,0,0,0.570762456703795,2.37061319387782,0,0,0,0,0,2.18376766658517,0.708875486211932,0.985143749731331,0,0.383382679165211,0,0,0,0,0,0.190493682876507,0,0,0,0.308482478109971,0,0.285826432630578,0,0,0.36669142910475,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0.602878754119172,0,0.399891964728228,0,0,0,0.239624855491583,0,0,0.579125226670317,0.205476322550383,0.179060963239896,0,0,0,0,0.254094624222463,0,2.31986643833309,0.670065061337395,1.91381625495949,0,0,0,0.12269149171914,0.500170521059677,0,0.415941723061614,0.178428988797162,0.157702415033935,0.234282829985426,0,0,0,0.664225598535437,0.184369168541703,0,0.195801157462741,0.686286847621712,0,0,0,0.606255142892519,0,0,0.992431231275107,0.153461973288062,1.96462066103151,0.384417447767103,0,0.804269605718038,0,0,0,0.0821271560138091,0,0,0.483437798366489,8.22076528243468,1.28913384510255,0,0,0,3.15839729035188,2.23344477602803,0.784349769176855,2.92278449306521,5.17202981575091,0,0.170093705276516,0.215915916102139,0,0.541892875087706,1.00337954770971,1.01950509218015,0.831076008928724,1.34324852833307,0,0,0.256450125116389,0,0.976135183992909,0.206082023295445,0.183138929636687,0.165018999841176,0,2.60024098414608,0,0.193341436584244,0,0.307007349452259,0,0,0,0,0.623224249527161,1.4875642382488,2.30628080838127,1.02090169995667,0.6069466851333,0.929691098594572,0,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0,0,0,1.32687795048244,0,0,0,0,0,0.281695602532241,0,0.196498082026242,0.35667105148125,0,0,0.329294892959902,0,0,0.673554789078584,0.670302275535787,0,0.0941438007767792,7.31859133541091,6.73885902670502,5.76459199597678,6.89170200620878,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0.743212700502875,0.144269212976445,0.213425530045242,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0.121360521749513,0,3.69376990848337,0.47748896947538,0.296964680832639,2.15012491469462,0.994147647766298,0.703347082052564,0.556543525114529,0,0,2.39097585901284,0,0.251932747854276,0.920418142519393,0,0.311039587661807,2.42644548097782,1.25314822272926,0,0.0986434056369336,0,0,0,0.556608588971108,0,0.520855522170466,0.61221999997337,1.44999915086959,0.796554137998498,0,1.18193840883968,0.344743373241465,0,0,0.885741385813839,1.20596438625408,0,0,0,0,0,0,1.23120413606075,1.13942055847001,0,0,0,0,0.457987967009312,1.5991043280559,1.02193298195737,0,0,0,0,0,0,0,0.632994193584081,0.163232808159148,0,0,0,0.176915129006678,0,0,0.370691816839509,0,0.269604531922708,0.802577647298789,0.234264445725339,0.547364367646998,0,0.242780379534093,0,0,0,0.252746318513952,0.150323419414493,0.103688191397247,0,1.323967823502,0,0,0,3.32819215231533,0.173559738335131,0.195984794828755,1.21882889212564,0.17472666824203,0.343972064943233,0.19351266257817,0.146178634172371,0.328461828212837,0.193978032976839,0,1.12990370390266,0,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| ||
|short_description=p@chr20:56226990..56227003,- | |short_description=p@chr20:56226990..56227003,- | ||
}} | }} |
Latest revision as of 15:43, 28 July 2015
Short description: | p@chr20:56226990..56227003, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:56226990..56227003, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 5.93e-11 | 4 |
urothelial cell | 5.93e-11 | 4 |
kidney tubule cell | 3.05e-10 | 10 |
nephron tubule epithelial cell | 3.05e-10 | 10 |
kidney cell | 2.99e-09 | 17 |
kidney epithelial cell | 2.99e-09 | 17 |
epithelial cell | 1.34e-08 | 253 |
epithelial cell of nephron | 1.58e-08 | 15 |
endodermal cell | 3.90e-08 | 58 |
endo-epithelial cell | 1.57e-07 | 42 |
epithelial cell of uterus | 7.51e-07 | 6 |
stromal cell of endometrium | 7.51e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 3.05e-10 | 10 |
urothelium | 1.01e-08 | 5 |
nephron epithelium | 1.58e-08 | 15 |
renal tubule | 1.58e-08 | 15 |
nephron tubule | 1.58e-08 | 15 |
nephron | 1.58e-08 | 15 |
uriniferous tubule | 1.58e-08 | 15 |
nephrogenic mesenchyme | 1.58e-08 | 15 |
excretory tube | 6.71e-08 | 16 |
kidney epithelium | 6.71e-08 | 16 |
urinary system structure | 1.28e-07 | 47 |
renal system | 2.19e-07 | 48 |
transitional epithelium | 3.11e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 7.51e-07 | 6 |