FFCP PHASE1:Hg19::chr1:2487227..2487248,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8764 | |EntrezGene=8764 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11912 | |HGNC=11912 | ||
|TSSclassifier=strong | |||
|UniProt=F6Q0M4 | |UniProt=F6Q0M4 | ||
|association_with_transcript=0bp_to_ENST00000434817,ENST00000435221_5end | |association_with_transcript=0bp_to_ENST00000434817,ENST00000435221_5end | ||
|cluster_id=chr1:2487227..2487248,+ | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_4_at_TNFRSF14_5end | |description=CAGE_peak_4_at_TNFRSF14_5end | ||
|id=chr1:2487227..2487248,+ | |id=chr1:2487227..2487248,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.44e-39!140;CL:0000766!3.93e-35!76;CL:0002031!2.41e-34!124;CL:0002087!1.61e-32!119;CL:0000037!1.01e-29!172;CL:0000566!1.01e-29!172;CL:0000839!1.46e-29!70;CL:0000557!2.46e-29!71;CL:0002057!3.67e-29!42;CL:0002032!1.02e-28!165;CL:0000837!1.02e-28!165;CL:0000988!1.69e-28!182;CL:0002009!7.85e-28!65;CL:0002194!1.22e-27!63;CL:0000576!1.22e-27!63;CL:0000040!1.22e-27!63;CL:0000559!1.22e-27!63;CL:0000860!3.27e-25!45;CL:0000763!2.78e-22!112;CL:0000049!2.78e-22!112;CL:0000134!1.04e-07!358;CL:0002320!3.01e-07!365;CL:0002393!6.14e-07!9;CL:0002397!6.14e-07!9;CL:0000838!6.81e-07!52 | |ontology_enrichment_celltype=CL:0000738!1.44e-39!140;CL:0000766!3.93e-35!76;CL:0002031!2.41e-34!124;CL:0002087!1.61e-32!119;CL:0000037!1.01e-29!172;CL:0000566!1.01e-29!172;CL:0000839!1.46e-29!70;CL:0000557!2.46e-29!71;CL:0002057!3.67e-29!42;CL:0002032!1.02e-28!165;CL:0000837!1.02e-28!165;CL:0000988!1.69e-28!182;CL:0002009!7.85e-28!65;CL:0002194!1.22e-27!63;CL:0000576!1.22e-27!63;CL:0000040!1.22e-27!63;CL:0000559!1.22e-27!63;CL:0000860!3.27e-25!45;CL:0000763!2.78e-22!112;CL:0000049!2.78e-22!112;CL:0000134!1.04e-07!358;CL:0002320!3.01e-07!365;CL:0002393!6.14e-07!9;CL:0002397!6.14e-07!9;CL:0000838!6.81e-07!52 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.69e-29;33!CL:0002057;2.69e-29;33!CL:0000473;8.44e-29;39!CL:0000234;8.44e-29;39!CL:0000576;7.68e-25;48!CL:0000766;1.98e-22;69!CL:0002087;1.36e-12;104!CL:0000738;1.60e-11;136!CL:0000763;5.99e-10;100!CL:0000094;4.88e-08;8!CL:0000988;7.60e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.23e-54,72;CL:0000738,4.79e-50,136;CL:0000473,5.29e-45,48;CL:0000234,5.29e-45,48;CL:0000557,8.69e-45,67;CL:0000839,1.75e-44,66;CL:0002194,4.90e-44,59;CL:0000576,4.90e-44,59;CL:0000040,4.90e-44,59;CL:0000559,4.90e-44,59;CL:0002087,5.51e-44,115;CL:0002031,8.00e-44,120;CL:0002009,3.61e-43,61;CL:0000860,9.04e-40,42;CL:0002057,9.04e-40,42;CL:0000037,4.66e-36,168;CL:0002032,2.29e-35,161;CL:0000837,2.29e-35,161;CL:0000988,5.47e-33,177;CL:0000763,1.72e-30,108;CL:0000049,1.72e-30,108;CL:0002393,5.31e-09,9;CL:0002397,5.31e-09,9;CL:0000134,4.13e-08,354;CL:0000094,4.84e-08,8;CL:0002320,1.30e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.03e-28;42!CL:0000049;6.21e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.94e-34!112;UBERON:0002390!2.57e-32!102;UBERON:0003061!2.57e-32!102;UBERON:0002405!9.83e-28!115;UBERON:0002371!9.07e-26!80;UBERON:0001474!2.80e-23!86;UBERON:0004765!2.45e-18!101;UBERON:0001434!2.45e-18!101;UBERON:0007023!1.68e-10!115;UBERON:0003081!9.27e-09!216 | |ontology_enrichment_uberon=UBERON:0002193!3.94e-34!112;UBERON:0002390!2.57e-32!102;UBERON:0003061!2.57e-32!102;UBERON:0002405!9.83e-28!115;UBERON:0002371!9.07e-26!80;UBERON:0001474!2.80e-23!86;UBERON:0004765!2.45e-18!101;UBERON:0001434!2.45e-18!101;UBERON:0007023!1.68e-10!115;UBERON:0003081!9.27e-09!216 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.58e-46,108;UBERON:0002390,1.91e-45,98;UBERON:0003061,1.91e-45,98;UBERON:0002405,2.94e-42,93;UBERON:0002371,2.58e-40,76;UBERON:0001474,2.44e-35,82;UBERON:0004765,9.73e-31,90;UBERON:0001434,1.12e-26,100;UBERON:0003081,1.63e-17,203;UBERON:0002204,2.27e-10,167;UBERON:0000926,4.06e-09,315;UBERON:0004120,4.06e-09,315;UBERON:0006603,4.06e-09,315;UBERON:0002384,6.95e-07,371 | |||
|phase1_expression=0.54503513781167,0,0.140954404095971,0,2.23480547213644,0.872338524100369,0,0.631719873426831,0.783556884599516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20936304141395,2.46301768349837,2.2826126580967,5.50709987588466,5.37361157336098,12.8497382352343,0,0,0,0,0.710846162437108,0,22.713811749807,14.6397446653203,14.1057065965304,14.5545058255951,9.06902264853143,16.2272607609538,11.1956643860265,16.6265415223076,13.3421233653299,25.1023359858139,34.9492704818552,38.4035899909928,31.9338555477587,26.6407134790265,17.7361672416439,32.4060939892421,40.665535065781,40.6279459783025,18.6359916147179,24.0157412050904,18.4273257244969,28.7718858828648,20.53945773287,30.0488449125549,11.5447955065351,19.9463657621632,11.08184351385,24.3775760448011,44.8234327506,33.632401445761,33.1648238138901,24.5096971657495,20.8501290916912,16.9511860737343,33.881542510856,22.4688295083028,5.70389273042243,17.8587611970637,9.22498040236854,13.0301212129934,11.7137976416375,6.10757229448904,12.5405607246149,13.1285006951399,10.0465284570549,0,0.546138611262131,0.889509253863555,2.13365111283254,0.800791974072025,3.4485146397269,0,0,3.41527781465669,2.93618594685469,4.96955196562797,0,4.48406850385229,0,1.37696839079683,1.96505381374582,1.85041349099558,6.01871383406441,1.62961133316795,3.31413464014313,1.94826728407911,7.24167969753628,1.76763544484902,1.32920336750173,2.70803863765016,6.27647466655808,4.03183977435623,7.39970570716543,8.29050053357545,9.56350182925673,1.92772532110679,2.40786745280742,4.18142095219907,4.53237370790265,1.14966148080576,1.37450978193052,1.01207876807801,2.86708872891687,1.30216690771284,0.950452044448374,2.86092726247768,1.27986611154418,2.49861453104692,0.947109008176067,4.10563998460523,2.21767417547206,1.60464117470104,2.02754165435919,0,0,0,0,1.50401373190767,0.579386075843295,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,2.61958150995425,0,0,14.6046327144608,9.0547463395619,9.1740992758017,1.90792499444274,0.571994910780128,1.11437250398869,0.596287222100115,0,0.694281003215189,0,0,0.825354125820202,0,2.58416759169329,3.5576626268671,1.67360306382335,1.20848795132744,0.760272105718513,1.22031028774085,1.10298924103761,0,0.625098097988558,1.12264686313085,0.675668882899933,0,0,0.366403487860815,13.1780417436063,38.7780264148325,0,0,0,0.926864265692532,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0.103325781175765,1.18800285728205,0.989067717114227,0,0.718618141816238,0,0,0,0,0.30648779579902,1.80285670687916,0.113432183160021,0.179389635688862,0,0,0.300091096084402,0,0.257640540045629,0.37223371266318,0.168776332241266,0,0.504867548488229,0.276149695926898,0.323292113637624,0.355009592516614,0,0,0.966304265816484,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0.168584690078102,0,0,0,0.237270619111097,0.539325232640658,0,0,5.16708818237254,0,0.4115740113314,0,0,1.96565443335525,0.590789906681404,0.441463099414651,0.983907508344908,0,0.219500570817251,0,0,0,0,0,0,0.115930404975077,0,2.30986316417718,2.77791307545966,3.61482889245737,0,0,14.7730203652438,11.2322047266834,12.7822799568306,0,0.16798212819886,0.850650583454319,0,0,0,0.492663237895943,7.30802002309776,29.6479205223304,29.832830357311,32.6967902574324,1.8414389344729,5.34783795781589,1.17217447210047,0,3.59896224461632,0.300343057843917,3.14409075893636,0,0,0,0,0,0,1.86156681609409,2.08014873822732,0,0,0,0.142977993658148,0.542621605391443,0,0,0.355391948742546,0,0.301439377059586,0,0,17.0273292897667,9.5428847372104,10.5416969741516,0.239624855491583,0,0,0.579125226670317,1.02738161275192,0,2.57795831185113,2.36436912242313,2.15627574859517,2.56686072559497,0,0,0,0,0,17.2271615507852,11.966458368161,8.28831026872071,0,1.50051156317903,0.271265023699736,0.415941723061614,0,0.473107245101804,0.117141414992713,0.601892199455438,0,0,0,0,0.260650843404249,0.783204629850962,0,2.89475236572042,6.25571182373989,4.90946765895844,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.512556597022804,2.55853624533352,0,0,0,0.177561725313127,0.164254312027618,0,0,0.241718899183244,0.601519410909855,0.552485933615378,0.229628896329213,0,2.88473712910733,0,0,0,0,0,1.13733384070897,1.02056223165909,0.215915916102139,3.08454505380579,0,0.501689773854853,0.509752546090077,0,0,0.219259876645935,0.522870902049801,4.10320200186223,0.656029291399411,4.22991913063594,1.75169719801128,0.0915694648183434,0.165018999841176,0.574265537996172,0,0,0,0.154048617114644,0,0,0,0,0.255679882248303,0,0.165284915360978,0.192190067365106,0.638063562472921,0.30347334256665,0,1.88887408098384,0.6970372701606,0,0,0,0,0,0,0.316379424718726,0.762520775695299,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0,0,0,0,1.21856744815642,1.05650146756755,0.682499557039929,0.282810863907425,0,0,0,0.438450885253763,0,1.31178950409327,0.202910376962704,0,0.281695602532241,0,0,0,1.06428319221179,1.26664581178598,0.658589785919804,0,0,0.192444225451024,0,2.17781969722645,3.38917682796405,0.43050537267123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|short_description=p4@TNFRSF14 | |short_description=p4@TNFRSF14 | ||
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Latest revision as of 00:51, 17 September 2015
Short description: | p4@TNFRSF14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TNFRSF14_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 0bp_to_ENST00000434817, ENST00000435221_5end |
EntrezGene: | TNFRSF14 |
HGNC: | 11912 |
UniProt: | F6Q0M4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.23e-54 | 72 |
leukocyte | 4.79e-50 | 136 |
defensive cell | 5.29e-45 | 48 |
phagocyte | 5.29e-45 | 48 |
granulocyte monocyte progenitor cell | 8.69e-45 | 67 |
myeloid lineage restricted progenitor cell | 1.75e-44 | 66 |
monopoietic cell | 4.90e-44 | 59 |
monocyte | 4.90e-44 | 59 |
monoblast | 4.90e-44 | 59 |
promonocyte | 4.90e-44 | 59 |
nongranular leukocyte | 5.51e-44 | 115 |
hematopoietic lineage restricted progenitor cell | 8.00e-44 | 120 |
macrophage dendritic cell progenitor | 3.61e-43 | 61 |
classical monocyte | 9.04e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.04e-40 | 42 |
hematopoietic stem cell | 4.66e-36 | 168 |
hematopoietic oligopotent progenitor cell | 2.29e-35 | 161 |
hematopoietic multipotent progenitor cell | 2.29e-35 | 161 |
hematopoietic cell | 5.47e-33 | 177 |
myeloid cell | 1.72e-30 | 108 |
common myeloid progenitor | 1.72e-30 | 108 |
intermediate monocyte | 5.31e-09 | 9 |
CD14-positive, CD16-positive monocyte | 5.31e-09 | 9 |
mesenchymal cell | 4.13e-08 | 354 |
granulocyte | 4.84e-08 | 8 |
connective tissue cell | 1.30e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.58e-46 | 108 |
hematopoietic system | 1.91e-45 | 98 |
blood island | 1.91e-45 | 98 |
immune system | 2.94e-42 | 93 |
bone marrow | 2.58e-40 | 76 |
bone element | 2.44e-35 | 82 |
skeletal element | 9.73e-31 | 90 |
skeletal system | 1.12e-26 | 100 |
lateral plate mesoderm | 1.63e-17 | 203 |
musculoskeletal system | 2.27e-10 | 167 |
mesoderm | 4.06e-09 | 315 |
mesoderm-derived structure | 4.06e-09 | 315 |
presumptive mesoderm | 4.06e-09 | 315 |
connective tissue | 6.95e-07 | 371 |