FFCP PHASE1:Hg19::chr17:55055472..55055522,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:55055472..55055522,+
|short_description=p1@SCPEP1
|description=CAGE_peak_1_at_SCPEP1_5end
|association_with_transcript=4bp_to_ENST00000262288,NM_021626,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=59342 | |EntrezGene=59342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29507 | |HGNC=29507 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HB40,Q9H2J9 | |UniProt=Q9HB40,Q9H2J9 | ||
|association_with_transcript=4bp_to_ENST00000262288,NM_021626,uc002iuv.3,uc010dcl.2,uc010wnk.1_5end | |||
|cluster_id=chr17:55055472..55055522,+ | |||
|coexpression_cluster_id=C392 | |||
|description=CAGE_peak_1_at_SCPEP1_5end | |||
|id=chr17:55055472..55055522,+ | |||
|ontology_enrichment_celltype=CL:0002009!4.62e-27!65;CL:0002194!4.78e-27!63;CL:0000576!4.78e-27!63;CL:0000040!4.78e-27!63;CL:0000559!4.78e-27!63;CL:0002057!1.15e-26!42;CL:0000860!9.24e-23!45;CL:0000766!2.87e-22!76;CL:0000839!8.49e-22!70;CL:0000557!3.39e-21!71;CL:0000763!8.06e-14!112;CL:0000049!8.06e-14!112;CL:0002320!4.00e-13!365;CL:0000134!1.55e-12!358;CL:0000219!1.64e-10!390;CL:0002087!1.82e-10!119;CL:0000048!2.33e-10!430;CL:0000723!7.59e-10!436;CL:0000738!2.06e-09!140;CL:0000034!5.68e-09!444;CL:0002031!2.49e-08!124 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.92e-20;39!CL:0000234;5.92e-20;39!CL:0000860;9.26e-20;33!CL:0002057;9.26e-20;33!CL:0000576;1.02e-17;48!CL:0000766;3.26e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,9.79e-31,48;CL:0000234,9.79e-31,48;CL:0002194,1.59e-30,59;CL:0000576,1.59e-30,59;CL:0000040,1.59e-30,59;CL:0000559,1.59e-30,59;CL:0002009,1.86e-30,61;CL:0000860,1.15e-26,42;CL:0002057,1.15e-26,42;CL:0000766,7.27e-25,72;CL:0000839,1.62e-24,66;CL:0000557,7.85e-24,67;CL:0000763,3.26e-15,108;CL:0000049,3.26e-15,108;CL:0002320,5.19e-14,361;CL:0000134,2.09e-13,354;CL:0002087,1.44e-11,115;CL:0000219,2.84e-11,386;CL:0000048,3.30e-11,427;CL:0000723,1.14e-10,433;CL:0000738,2.45e-10,136;CL:0000034,9.45e-10,441;CL:0002031,3.03e-09,120;CL:0000037,8.87e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.26e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!1.97e-19!86;UBERON:0002390!2.04e-19!102;UBERON:0003061!2.04e-19!102;UBERON:0002371!2.60e-19!80;UBERON:0002193!1.85e-18!112;UBERON:0004765!4.56e-18!101;UBERON:0001434!4.56e-18!101;UBERON:0002405!4.41e-13!115;UBERON:0002384!1.52e-12!375;UBERON:0002204!4.66e-12!167;UBERON:0003081!2.10e-07!216;UBERON:0000926!7.93e-07!448;UBERON:0004120!7.93e-07!448;UBERON:0006603!7.93e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,1.42e-21,82;UBERON:0002371,1.47e-21,76;UBERON:0002390,2.62e-21,98;UBERON:0003061,2.62e-21,98;UBERON:0004765,1.59e-20,90;UBERON:0002193,3.63e-20,108;UBERON:0001434,1.17e-19,100;UBERON:0002405,5.81e-18,93;UBERON:0002384,2.13e-13,371;UBERON:0002204,3.71e-13,167;UBERON:0000926,1.23e-11,315;UBERON:0004120,1.23e-11,315;UBERON:0006603,1.23e-11,315;UBERON:0003081,3.20e-10,203 | |||
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| ||
|short_description=p1@SCPEP1 | |||
}} | }} |
Latest revision as of 08:32, 16 September 2015
Short description: | p1@SCPEP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCPEP1_5end |
Coexpression cluster: | C392_Monocytederived_CD14_Macrophage_CD14CD16_Dendritic_Eosinophils_migratory |
Association with transcript: | 4bp_to_ENST00000262288, NM_021626, uc002iuv.3, uc010dcl.2, uc010wnk.1_5end |
EntrezGene: | SCPEP1 |
HGNC: | 29507 |
UniProt: | Q9HB40Q9H2J9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 9.79e-31 | 48 |
phagocyte | 9.79e-31 | 48 |
monopoietic cell | 1.59e-30 | 59 |
monocyte | 1.59e-30 | 59 |
monoblast | 1.59e-30 | 59 |
promonocyte | 1.59e-30 | 59 |
macrophage dendritic cell progenitor | 1.86e-30 | 61 |
classical monocyte | 1.15e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.15e-26 | 42 |
myeloid leukocyte | 7.27e-25 | 72 |
myeloid lineage restricted progenitor cell | 1.62e-24 | 66 |
granulocyte monocyte progenitor cell | 7.85e-24 | 67 |
myeloid cell | 3.26e-15 | 108 |
common myeloid progenitor | 3.26e-15 | 108 |
connective tissue cell | 5.19e-14 | 361 |
mesenchymal cell | 2.09e-13 | 354 |
nongranular leukocyte | 1.44e-11 | 115 |
motile cell | 2.84e-11 | 386 |
multi fate stem cell | 3.30e-11 | 427 |
somatic stem cell | 1.14e-10 | 433 |
leukocyte | 2.45e-10 | 136 |
stem cell | 9.45e-10 | 441 |
hematopoietic lineage restricted progenitor cell | 3.03e-09 | 120 |
hematopoietic stem cell | 8.87e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone element | 1.42e-21 | 82 |
bone marrow | 1.47e-21 | 76 |
hematopoietic system | 2.62e-21 | 98 |
blood island | 2.62e-21 | 98 |
skeletal element | 1.59e-20 | 90 |
hemolymphoid system | 3.63e-20 | 108 |
skeletal system | 1.17e-19 | 100 |
immune system | 5.81e-18 | 93 |
connective tissue | 2.13e-13 | 371 |
musculoskeletal system | 3.71e-13 | 167 |
mesoderm | 1.23e-11 | 315 |
mesoderm-derived structure | 1.23e-11 | 315 |
presumptive mesoderm | 1.23e-11 | 315 |
lateral plate mesoderm | 3.20e-10 | 203 |