FFCP PHASE1:Hg19::chr18:67956111..67956128,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9306 | |EntrezGene=9306 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16833 | |HGNC=16833 | ||
|TSSclassifier=strong | |||
|UniProt=O14544 | |UniProt=O14544 | ||
|association_with_transcript=-8bp_to_NM_004232,uc002lkr.1_5end | |association_with_transcript=-8bp_to_NM_004232,uc002lkr.1_5end | ||
|cluster_id=chr18:67956111..67956128,+ | |||
|description=CAGE_peak_2_at_SOCS6_5end | |description=CAGE_peak_2_at_SOCS6_5end | ||
|id=chr18:67956111..67956128,+ | |id=chr18:67956111..67956128,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!2.68e-14!511;UBERON:0000481!6.56e-14!347;UBERON:0000468!1.40e-12!659;UBERON:0000922!2.88e-12!612;UBERON:0002050!1.06e-11!605;UBERON:0005423!1.06e-11!605;UBERON:0000073!1.64e-11!94;UBERON:0001016!1.64e-11!94;UBERON:0000923!2.20e-11!604;UBERON:0005291!2.20e-11!604;UBERON:0006598!2.20e-11!604;UBERON:0002532!2.20e-11!604;UBERON:0000467!6.19e-11!625;UBERON:0001049!7.65e-11!57;UBERON:0005068!7.65e-11!57;UBERON:0006241!7.65e-11!57;UBERON:0007135!7.65e-11!57;UBERON:0000480!8.98e-11!626;UBERON:0003075!1.11e-10!86;UBERON:0007284!1.11e-10!86;UBERON:0005743!1.41e-10!86;UBERON:0000955!1.65e-10!69;UBERON:0006238!1.65e-10!69;UBERON:0002346!2.22e-10!90;UBERON:0001017!3.78e-10!82;UBERON:0000475!1.56e-09!365;UBERON:0007023!2.26e-09!115;UBERON:0004121!2.68e-09!169;UBERON:0000924!3.35e-09!173;UBERON:0006601!3.35e-09!173;UBERON:0002616!3.89e-09!59;UBERON:0000033!2.86e-07!123;UBERON:0000483!4.35e-07!309;UBERON:0000119!7.85e-07!312;UBERON:0003056!9.22e-07!61 | |ontology_enrichment_uberon=UBERON:0000062!2.68e-14!511;UBERON:0000481!6.56e-14!347;UBERON:0000468!1.40e-12!659;UBERON:0000922!2.88e-12!612;UBERON:0002050!1.06e-11!605;UBERON:0005423!1.06e-11!605;UBERON:0000073!1.64e-11!94;UBERON:0001016!1.64e-11!94;UBERON:0000923!2.20e-11!604;UBERON:0005291!2.20e-11!604;UBERON:0006598!2.20e-11!604;UBERON:0002532!2.20e-11!604;UBERON:0000467!6.19e-11!625;UBERON:0001049!7.65e-11!57;UBERON:0005068!7.65e-11!57;UBERON:0006241!7.65e-11!57;UBERON:0007135!7.65e-11!57;UBERON:0000480!8.98e-11!626;UBERON:0003075!1.11e-10!86;UBERON:0007284!1.11e-10!86;UBERON:0005743!1.41e-10!86;UBERON:0000955!1.65e-10!69;UBERON:0006238!1.65e-10!69;UBERON:0002346!2.22e-10!90;UBERON:0001017!3.78e-10!82;UBERON:0000475!1.56e-09!365;UBERON:0007023!2.26e-09!115;UBERON:0004121!2.68e-09!169;UBERON:0000924!3.35e-09!173;UBERON:0006601!3.35e-09!173;UBERON:0002616!3.89e-09!59;UBERON:0000033!2.86e-07!123;UBERON:0000483!4.35e-07!309;UBERON:0000119!7.85e-07!312;UBERON:0003056!9.22e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.73e-07;53!UBERON:0002616;2.73e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,1.03e-13,223;UBERON:0003075,1.17e-11,82;UBERON:0007284,1.17e-11,82;UBERON:0001049,2.74e-11,56;UBERON:0005068,2.74e-11,56;UBERON:0006241,2.74e-11,56;UBERON:0007135,2.74e-11,56;UBERON:0010314,5.88e-11,132;UBERON:0002346,8.16e-11,86;UBERON:0001016,1.54e-10,89;UBERON:0007023,3.15e-10,114;UBERON:0000955,7.54e-10,68;UBERON:0006238,7.54e-10,68;UBERON:0000073,8.71e-10,53;UBERON:0002616,8.71e-10,53;UBERON:0001017,2.01e-09,81;UBERON:0010371,3.80e-09,104;UBERON:0004121,2.01e-08,171;UBERON:0000924,2.01e-08,171;UBERON:0006601,2.01e-08,171;UBERON:0003056,2.70e-07,61;UBERON:0000922,3.11e-07,592 | |||
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| ||
|short_description=p2@SOCS6 | |short_description=p2@SOCS6 | ||
}} | }} |
Latest revision as of 07:07, 20 September 2015
Short description: | p2@SOCS6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOCS6_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_NM_004232, uc002lkr.1_5end |
EntrezGene: | SOCS6 |
HGNC: | 16833 |
UniProt: | O14544 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 1.03e-13 | 223 |
neural plate | 1.17e-11 | 82 |
presumptive neural plate | 1.17e-11 | 82 |
neural tube | 2.74e-11 | 56 |
neural rod | 2.74e-11 | 56 |
future spinal cord | 2.74e-11 | 56 |
neural keel | 2.74e-11 | 56 |
structure with developmental contribution from neural crest | 5.88e-11 | 132 |
neurectoderm | 8.16e-11 | 86 |
nervous system | 1.54e-10 | 89 |
adult organism | 3.15e-10 | 114 |
brain | 7.54e-10 | 68 |
future brain | 7.54e-10 | 68 |
regional part of nervous system | 8.71e-10 | 53 |
regional part of brain | 8.71e-10 | 53 |
central nervous system | 2.01e-09 | 81 |
ecto-epithelium | 3.80e-09 | 104 |
ectoderm-derived structure | 2.01e-08 | 171 |
ectoderm | 2.01e-08 | 171 |
presumptive ectoderm | 2.01e-08 | 171 |
pre-chordal neural plate | 2.70e-07 | 61 |
embryo | 3.11e-07 | 592 |