FFCP PHASE1:Hg19::chr17:48474828..48474914,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:48474828..48474914,-
|short_description=p1@LRRC59
|description=CAGE_peak_1_at_LRRC59_5end
|association_with_transcript=0bp_to_ENST00000225972,NM_018509,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55379 | |EntrezGene=55379 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28817 | |HGNC=28817 | ||
|TSSclassifier=strong | |||
|UniProt=Q96AG4 | |UniProt=Q96AG4 | ||
|association_with_transcript=0bp_to_ENST00000225972,NM_018509,uc002iqt.2_5end | |||
|cluster_id=chr17:48474828..48474914,- | |||
|coexpression_cluster_id=C3654 | |||
|description=CAGE_peak_1_at_LRRC59_5end | |||
|id=chr17:48474828..48474914,- | |||
|ontology_enrichment_celltype=CL:0000548!1.54e-55!679;CL:0000004!1.54e-55!679;CL:0000255!1.54e-55!679;CL:0000012!8.03e-55!682;CL:0000144!3.36e-41!625;CL:0002371!5.26e-35!591;CL:0000003!6.97e-33!722;CL:0000220!5.70e-31!246;CL:0002321!1.01e-30!248;CL:0000063!1.23e-26!578;CL:0000055!1.07e-25!180;CL:0000222!3.39e-22!119;CL:0000066!3.49e-21!254;CL:0000183!8.21e-15!59;CL:0000057!1.19e-14!75;CL:0000680!2.02e-14!57;CL:0000056!2.02e-14!57;CL:0000355!2.02e-14!57;CL:0000187!3.88e-14!54;CL:0000192!2.23e-13!42;CL:0000514!2.23e-13!42;CL:0000393!3.25e-11!60;CL:0000211!3.25e-11!60;CL:0000359!1.04e-10!32;CL:0000723!2.72e-10!436;CL:0000034!1.04e-09!444;CL:0000048!1.59e-09!430;CL:0000076!2.03e-09!62;CL:0000213!3.31e-08!57;CL:0000215!3.31e-08!57 | |||
|ontology_enrichment_celltype_v019=CL:0000359;4.53e-10;32!CL:0000192;8.56e-10;43!CL:0000187;1.48e-08;55!CL:0000057;3.06e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.49e-31,250;CL:0000222,9.76e-23,121;CL:0000066,4.73e-21,253;CL:0000057,1.10e-14,76;CL:0000680,1.76e-14,58;CL:0000056,1.76e-14,58;CL:0000355,1.76e-14,58;CL:0000187,3.41e-14,55;CL:0000192,2.07e-13,43;CL:0000514,2.07e-13,43;CL:0000393,2.71e-11,61;CL:0000211,2.71e-11,61;CL:0000359,1.04e-10,32;CL:0000723,4.58e-10,433;CL:0000034,1.72e-09,441;CL:0000048,2.61e-09,427;CL:0000076,3.22e-09,63;CL:0000213,1.44e-08,58;CL:0000215,1.44e-08,58 | |||
|ontology_enrichment_development_v019=CL:0000514;8.56e-10;43!CL:0000355;3.76e-08;58!CL:0000222;5.03e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!6.26e-21!143;UBERON:0000490!3.64e-19!138;UBERON:0002100!1.32e-17!216;UBERON:0003104!2.25e-17!238;UBERON:0009142!2.25e-17!238;UBERON:0003914!3.28e-17!118;UBERON:0000914!3.58e-15!83;UBERON:0002329!3.58e-15!83;UBERON:0003077!3.58e-15!83;UBERON:0003059!3.58e-15!83;UBERON:0007282!3.58e-15!83;UBERON:0009618!3.58e-15!83;UBERON:0007285!3.58e-15!83;UBERON:0000486!4.01e-15!82;UBERON:0004290!7.07e-15!70;UBERON:0002049!5.78e-13!79;UBERON:0007798!5.78e-13!79;UBERON:0000926!5.79e-13!448;UBERON:0004120!5.79e-13!448;UBERON:0006603!5.79e-13!448;UBERON:0001637!7.33e-13!42;UBERON:0003509!7.33e-13!42;UBERON:0004572!7.33e-13!42;UBERON:0001981!5.29e-12!60;UBERON:0007500!5.29e-12!60;UBERON:0004537!5.29e-12!60;UBERON:0006965!5.29e-12!60;UBERON:0000055!5.78e-12!69;UBERON:0001134!2.43e-11!61;UBERON:0002036!2.43e-11!61;UBERON:0003082!2.43e-11!61;UBERON:0004872!3.12e-11!84;UBERON:0002385!2.64e-10!63;UBERON:0001015!2.64e-10!63;UBERON:0000383!2.64e-10!63;UBERON:0003102!3.71e-09!95;UBERON:0004573!6.39e-09!33;UBERON:0004571!6.39e-09!33;UBERON:0002199!6.83e-08!45;UBERON:0002416!6.83e-08!45;UBERON:0000119!6.34e-07!312;UBERON:0009569!8.64e-07!113;UBERON:0004535!9.04e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;2.41e-09;42!UBERON:0003509;2.41e-09;42!UBERON:0004572;2.41e-09;42!UBERON:0007500;2.16e-08;56!UBERON:0001981;2.16e-08;56!UBERON:0004537;2.16e-08;56!UBERON:0004573;5.08e-08;33!UBERON:0004571;5.08e-08;33!UBERON:0003914;8.80e-08;74!UBERON:0000490;1.59e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,7.06e-23,148;UBERON:0005256,1.71e-18,122;UBERON:0002100,2.84e-18,199;UBERON:0007503,3.76e-17,78;UBERON:0003914,4.13e-17,117;UBERON:0003104,1.42e-16,160;UBERON:0009142,1.42e-16,160;UBERON:0000486,3.30e-15,83;UBERON:0002329,5.95e-15,71;UBERON:0003059,5.95e-15,71;UBERON:0007282,5.95e-15,71;UBERON:0004290,5.95e-15,71;UBERON:0009618,5.95e-15,71;UBERON:0003077,3.60e-14,72;UBERON:0007285,3.60e-14,72;UBERON:0007524,4.83e-14,73;UBERON:0002049,6.43e-13,78;UBERON:0007798,6.43e-13,78;UBERON:0001637,7.33e-13,42;UBERON:0003509,7.33e-13,42;UBERON:0004572,7.33e-13,42;UBERON:0007500,5.68e-12,59;UBERON:0001981,5.68e-12,59;UBERON:0004537,5.68e-12,59;UBERON:0006965,5.68e-12,59;UBERON:0000055,6.36e-12,68;UBERON:0001134,2.03e-11,62;UBERON:0002036,2.03e-11,62;UBERON:0003082,2.03e-11,62;UBERON:0004872,3.54e-11,83;UBERON:0002385,2.17e-10,64;UBERON:0001015,2.17e-10,64;UBERON:0000383,2.17e-10,64;UBERON:0003102,1.29e-09,99;UBERON:0004573,6.39e-09,33;UBERON:0004571,6.39e-09,33;UBERON:0002199,1.13e-07,46;UBERON:0002416,1.13e-07,46;UBERON:0000119,4.83e-07,309;UBERON:0000926,5.75e-07,315;UBERON:0004120,5.75e-07,315;UBERON:0006603,5.75e-07,315;UBERON:0009569,6.93e-07,112 | |||
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| ||
|short_description=p1@LRRC59 | |||
}} | }} |
Latest revision as of 02:14, 16 September 2015
Short description: | p1@LRRC59 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC59_5end |
Coexpression cluster: | C3654_Alveolar_Renal_Smooth_Fibroblast_Mesenchymal_Keratinocyte_Hair |
Association with transcript: | 0bp_to_ENST00000225972, NM_018509, uc002iqt.2_5end |
EntrezGene: | LRRC59 |
HGNC: | 28817 |
UniProt: | Q96AG4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.49e-31 | 250 |
mesodermal cell | 9.76e-23 | 121 |
epithelial cell | 4.73e-21 | 253 |
fibroblast | 1.10e-14 | 76 |
muscle precursor cell | 1.76e-14 | 58 |
myoblast | 1.76e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.76e-14 | 58 |
muscle cell | 3.41e-14 | 55 |
smooth muscle cell | 2.07e-13 | 43 |
smooth muscle myoblast | 2.07e-13 | 43 |
electrically responsive cell | 2.71e-11 | 61 |
electrically active cell | 2.71e-11 | 61 |
vascular associated smooth muscle cell | 1.04e-10 | 32 |
somatic stem cell | 4.58e-10 | 433 |
stem cell | 1.72e-09 | 441 |
multi fate stem cell | 2.61e-09 | 427 |
squamous epithelial cell | 3.22e-09 | 63 |
lining cell | 1.44e-08 | 58 |
barrier cell | 1.44e-08 | 58 |