FFCP PHASE1:Hg19::chr17:48272951..48272983,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:48272951..48272983,-
|short_description=p30@COL1A1
|description=CAGE_peak_30_at_COL1A1_5end
|association_with_transcript=42bp_to_ENST00000471344_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=42bp_to_ENST00000471344_5end | |||
|cluster_id=chr17:48272951..48272983,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_30_at_COL1A1_5end | |||
|id=chr17:48272951..48272983,- | |||
|ontology_enrichment_celltype=CL:0000055!2.57e-39!180;CL:0000057!1.66e-24!75;CL:0000183!2.68e-17!59;CL:0000680!7.25e-17!57;CL:0000056!7.25e-17!57;CL:0000355!7.25e-17!57;CL:0000187!3.31e-16!54;CL:0000393!7.14e-14!60;CL:0000211!7.14e-14!60;CL:0000192!3.26e-13!42;CL:0000514!3.26e-13!42;CL:0000048!5.09e-12!430;CL:0000723!2.63e-11!436;CL:0000034!1.49e-10!444;CL:0002620!4.65e-09!23;CL:0000359!5.07e-09!32;CL:0002334!2.53e-08!12;CL:0002371!2.32e-07!591;CL:0000222!7.10e-07!119;CL:0000144!9.61e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.61e-10;55!CL:0002320;5.78e-10;188!CL:0002334;5.96e-10;12!CL:0000723;1.20e-09;61!CL:0000048;1.45e-09;58!CL:0000057;7.43e-09;73!CL:0000187;8.78e-09;55!CL:0000192;1.81e-08;43!CL:0000499;3.38e-08;28!CL:0002620;1.46e-07;23!CL:0000393;1.89e-07;61!CL:0000211;1.89e-07;61!CL:0000034;2.81e-07;69!CL:0002570;7.50e-07;8!CL:0000327;7.70e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.48e-25,76;CL:0000048,1.46e-19,427;CL:0000723,1.36e-18,433;CL:0000034,2.36e-17,441;CL:0000680,5.04e-15,58;CL:0000056,5.04e-15,58;CL:0000355,5.04e-15,58;CL:0000187,9.61e-15,55;CL:0000393,4.85e-12,61;CL:0000211,4.85e-12,61;CL:0000192,6.30e-11,43;CL:0000514,6.30e-11,43;CL:0002320,4.10e-10,361;CL:0002334,4.22e-10,12;CL:0000134,2.10e-09,354;CL:0000499,3.68e-08,28;CL:0000219,1.72e-07,386;CL:0002620,2.23e-07,23;CL:0002570,5.13e-07,8;CL:0000327,8.35e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;1.81e-08;43!CL:0000355;7.39e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;8.92e-07;14 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.45e-20!83;UBERON:0002329!3.45e-20!83;UBERON:0003077!3.45e-20!83;UBERON:0003059!3.45e-20!83;UBERON:0007282!3.45e-20!83;UBERON:0009618!3.45e-20!83;UBERON:0007285!3.45e-20!83;UBERON:0004290!1.23e-18!70;UBERON:0002385!1.33e-17!63;UBERON:0001015!1.33e-17!63;UBERON:0000383!1.33e-17!63;UBERON:0001134!1.47e-17!61;UBERON:0002036!1.47e-17!61;UBERON:0003082!1.47e-17!61;UBERON:0000486!5.95e-15!82;UBERON:0005256!1.64e-13!143;UBERON:0002100!1.91e-09!216;UBERON:0000475!1.09e-08!365;UBERON:0001013!2.47e-08!14;UBERON:0003102!9.34e-08!95;UBERON:0004872!1.68e-07!84;UBERON:0002199!1.76e-07!45;UBERON:0002416!1.76e-07!45;UBERON:0000490!2.79e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.62e-09;198!UBERON:0001013;4.14e-09;14!UBERON:0003688;1.27e-07;6!UBERON:0002358;1.27e-07;6!UBERON:0003684;1.27e-07;6!UBERON:0001178;1.27e-07;6!UBERON:0004457;1.64e-07;9!UBERON:0000042;1.64e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.67e-15,62;UBERON:0002036,1.67e-15,62;UBERON:0003082,1.67e-15,62;UBERON:0002385,1.43e-14,64;UBERON:0001015,1.43e-14,64;UBERON:0000383,1.43e-14,64;UBERON:0007524,2.19e-14,73;UBERON:0002329,4.03e-14,71;UBERON:0003059,4.03e-14,71;UBERON:0007282,4.03e-14,71;UBERON:0004290,4.03e-14,71;UBERON:0009618,4.03e-14,71;UBERON:0003077,1.01e-13,72;UBERON:0007285,1.01e-13,72;UBERON:0007503,1.53e-13,78;UBERON:0000486,1.62e-11,83;UBERON:0002384,1.77e-10,371;UBERON:0005256,5.17e-10,122;UBERON:0001013,3.34e-09,14;UBERON:0003104,2.62e-08,160;UBERON:0009142,2.62e-08,160;UBERON:0003688,1.32e-07,6;UBERON:0002358,1.32e-07,6;UBERON:0003684,1.32e-07,6;UBERON:0001178,1.32e-07,6;UBERON:0002199,1.42e-07,46;UBERON:0002416,1.42e-07,46 | |||
|phase1_expression=25.0716163393368,22.4805550085532,30.1642424765378,10.007329835313,34.4160042709012,13.0850778615055,22.796989035148,2.52687949370732,0.261185628199839,0.245733936501509,0,0.655324116390517,4.22027165165526,0.74259811776028,0.994192127183747,1.34465029290355,1.20538905604795,0.730310090387373,0.487932798790507,2.09305798730539,3.06001036866379,5.95563970808367,0,0.547497700291537,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,1.53435074212236,3.61439152384566,23.5628817998868,5.64901423947212,5.5670016293577,12.1658717575659,0.661743720148475,3.99112915432615,2.72287835648691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,27.8304292949378,13.0429427014517,2.78059279707759,35.8545775936017,9.930714701554,1.68203280042692,8.5399196583764,10.6067045819379,1.8672662123986,3.50247747381189,1.79808093424805,5.2975099675726,4.03323147135999,0.234321431833797,0.312160076830321,0,0.747243402759005,0.352303495931295,0.809364721840658,0.421352420106746,0,0.982674538494144,1.44656093646072,49.8961200058462,44.5080472701402,5.46096817162816,11.4978902690598,0.168336113954066,1.37630371859161,0.554128230968366,3.07284334616587,12.5659996277598,30.9490401347589,1.02088964844019,5.202299434977,11.5320989962026,8.47727604638247,4.50136644126603,5.66788910811414,4.12224864073007,7.44467425326359,9.78902726999344,6.23596833031671,3.02920529092937,7.17989209409935,7.43571861366535,5.68015348026583,3.52632343796741,3.05209066158878,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,3.12899064659632,5.14592750554308,1.38134921352481,1.39310378409594,2.16563844500876,0,0,0,0,0,0,0,0,0,0,4.20725321410337,6.173610169971,17.641045366265,0,0,0.590789906681404,0,0,0.514703430895577,0,0,0,0.0925884451585296,0.651616610620649,0,0,0.115930404975077,0.939269553886573,0,0,0,0,0,0,0,0,0,1.00789276919316,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0.205654985406647,0,0,1.23344192779897,2.1798003441664,0.7333828582095,5.94649892485778,7.15312891703765,4.22651376278,6.91439103120663,10.4007436911366,0.257207374262142,2.83698264046557,1.3321108950805,6.0050757336422,17.9065129779176,4.93944202068461,1.95441710576241,3.55391948742546,0.791951872933429,0,1.74306691720059,1.19967589418468,0,0,0,13.179367052037,25.2696258835051,1.42636905040718,1.44781306667579,3.08214483825575,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.736148950314839,1.50051156317903,1.35632511849868,29.7398331989054,20.8761916892679,16.2433487484953,5.85707074963566,36.1135319673263,75.044476338475,3.10419213877515,2.65690239414175,5.34670588770939,3.30157734978715,5.87403472388222,13.7257369524342,0,0,0,0.606255142892519,11.6504807657348,7.55975733324201,37.2161711728165,7.366174717827,51.0801371868194,53.562164388883,14.3278029738677,40.0526263647583,8.90508398669946,2.46735510084249,6.5697838365857,1.31403449622095,1.55776328755086,1.97557643381931,0,0.200506470303285,0,6.19998020088876,8.74037606432242,12.5879438361047,0,0,0,0,0,0,0,0,1.54227252690289,1.89662506280697,1.50506932156456,0,0,0,0,0,0,0,0.325378394664303,0.206082023295445,1.37354197227515,0.330037999682352,0,0,11.2478750890912,1.54673149267395,1.07834031980251,2.14905144616581,1.92971201478343,2.47066563197029,5.80066775656914,1.53407929348982,8.27997931514657,0.991709492165869,1.34533047155574,0,0.4046311234222,1.39453664789186,18.8887408098384,1.3940745403212,1.23213432070436,0.532306030317022,0.869932992075073,2.59453906745488,1.00187420719394,0.744316738719335,3.48017367190598,8.76898892049594,2.55897791311334,1.28381696410176,4.77304871888905,6.27958912159384,4.13706652441624,8.5106479218177,5.65499531259295,0.808729926293264,0,0.842516912477962,1.95053495635836,1.21856744815642,3.16950440270266,6.41549583617533,21.7764365208718,12.4308928282267,5.51365343546124,0,2.19225442626881,3.47265320560013,1.9676842561399,2.43492452355245,2.16876448669825,5.35221644811259,0.573645408816206,2.16147890228867,1.426684205925,1.06428319221179,5.48879851773927,4.61012850143863,3.03578539012572,0.349934720244983,0,0.670302275535787,0,0.188287601553558,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0.796991953004279,0.552567831062295,0,0,0,10.8863855681633,0,0,0,0.690503839458535,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,4.46311499322023,0.569710279235006,0,0,0,0,12.640467889457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,3.66618086960175,0,0,0,0,12.8412423567806,0,0,0,0,0,1.20990716048664,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,2.79562669187248,0,0,0.0730893170861856,0,0.0969890164884194,0.0882561266915003,4.97157629717171,0,0,0,0,0,1.70762395791482,0,0,0,0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| ||
|short_description=p30@COL1A1 | |||
}} | }} |
Latest revision as of 00:59, 16 September 2015
Short description: | p30@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_30_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 42bp_to_ENST00000471344_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.48e-25 | 76 |
multi fate stem cell | 1.46e-19 | 427 |
somatic stem cell | 1.36e-18 | 433 |
stem cell | 2.36e-17 | 441 |
muscle precursor cell | 5.04e-15 | 58 |
myoblast | 5.04e-15 | 58 |
multi-potent skeletal muscle stem cell | 5.04e-15 | 58 |
muscle cell | 9.61e-15 | 55 |
electrically responsive cell | 4.85e-12 | 61 |
electrically active cell | 4.85e-12 | 61 |
smooth muscle cell | 6.30e-11 | 43 |
smooth muscle myoblast | 6.30e-11 | 43 |
connective tissue cell | 4.10e-10 | 361 |
preadipocyte | 4.22e-10 | 12 |
mesenchymal cell | 2.10e-09 | 354 |
stromal cell | 3.68e-08 | 28 |
motile cell | 1.72e-07 | 386 |
skin fibroblast | 2.23e-07 | 23 |
mesenchymal stem cell of adipose | 5.13e-07 | 8 |
extracellular matrix secreting cell | 8.35e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.67e-15 | 62 |
striated muscle tissue | 1.67e-15 | 62 |
myotome | 1.67e-15 | 62 |
muscle tissue | 1.43e-14 | 64 |
musculature | 1.43e-14 | 64 |
musculature of body | 1.43e-14 | 64 |
dense mesenchyme tissue | 2.19e-14 | 73 |
somite | 4.03e-14 | 71 |
presomitic mesoderm | 4.03e-14 | 71 |
presumptive segmental plate | 4.03e-14 | 71 |
dermomyotome | 4.03e-14 | 71 |
trunk paraxial mesoderm | 4.03e-14 | 71 |
paraxial mesoderm | 1.01e-13 | 72 |
presumptive paraxial mesoderm | 1.01e-13 | 72 |
epithelial vesicle | 1.53e-13 | 78 |
multilaminar epithelium | 1.62e-11 | 83 |
connective tissue | 1.77e-10 | 371 |
trunk mesenchyme | 5.17e-10 | 122 |
adipose tissue | 3.34e-09 | 14 |
mesenchyme | 2.62e-08 | 160 |
entire embryonic mesenchyme | 2.62e-08 | 160 |
omentum | 1.32e-07 | 6 |
peritoneum | 1.32e-07 | 6 |
abdominal cavity | 1.32e-07 | 6 |
visceral peritoneum | 1.32e-07 | 6 |
integument | 1.42e-07 | 46 |
integumental system | 1.42e-07 | 46 |