FFCP PHASE1:Hg19::chr17:48272618..48272661,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:48272618..48272661,-
|short_description=p20@COL1A1
|description=CAGE_peak_20_at_COL1A1_5end
|association_with_transcript=0bp_to_J00110,K01228_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=0bp_to_J00110,K01228_5end | |||
|cluster_id=chr17:48272618..48272661,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_20_at_COL1A1_5end | |||
|id=chr17:48272618..48272661,- | |||
|ontology_enrichment_celltype=CL:0000055!7.14e-38!180;CL:0000057!3.21e-25!75;CL:0000183!2.31e-15!59;CL:0000680!5.47e-15!57;CL:0000056!5.47e-15!57;CL:0000355!5.47e-15!57;CL:0000187!3.73e-14!54;CL:0000048!8.76e-12!430;CL:0000393!1.50e-11!60;CL:0000211!1.50e-11!60;CL:0000723!4.95e-11!436;CL:0000034!1.84e-10!444;CL:0000192!4.28e-10!42;CL:0000514!4.28e-10!42;CL:0002371!1.12e-08!591;CL:0002334!1.38e-08!12;CL:0002620!2.27e-08!23;CL:0000144!2.47e-08!625;CL:0000222!1.26e-07!119;CL:0000499!1.42e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.78e-10;55!CL:0002334;5.25e-10;12!CL:0002320;8.04e-10;188!CL:0000057;1.12e-09;73!CL:0000723;1.14e-09;61!CL:0000187;1.19e-09;55!CL:0000048;2.66e-09;58!CL:0000499;2.77e-08;28!CL:0000192;2.96e-08;43!CL:0000393;1.10e-07;61!CL:0000211;1.10e-07;61!CL:0000327;1.40e-07;15!CL:0002620;5.05e-07;23!CL:0000034;9.81e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.75e-26,76;CL:0000048,4.74e-19,427;CL:0000723,5.08e-18,433;CL:0000680,3.42e-17,58;CL:0000056,3.42e-17,58;CL:0000355,3.42e-17,58;CL:0000034,1.05e-16,441;CL:0000187,3.40e-16,55;CL:0000393,3.75e-13,61;CL:0000211,3.75e-13,61;CL:0000192,2.24e-11,43;CL:0000514,2.24e-11,43;CL:0002334,5.50e-10,12;CL:0002320,1.08e-09,361;CL:0000134,2.06e-08,354;CL:0000499,3.21e-08,28;CL:0000222,1.35e-07,121;CL:0000327,1.66e-07,15;CL:0002620,3.76e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000355;2.88e-10;58!CL:0000514;2.96e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!4.64e-17!83;UBERON:0002329!4.64e-17!83;UBERON:0003077!4.64e-17!83;UBERON:0003059!4.64e-17!83;UBERON:0007282!4.64e-17!83;UBERON:0009618!4.64e-17!83;UBERON:0007285!4.64e-17!83;UBERON:0004290!2.00e-15!70;UBERON:0002385!3.76e-15!63;UBERON:0001015!3.76e-15!63;UBERON:0000383!3.76e-15!63;UBERON:0001134!4.80e-15!61;UBERON:0002036!4.80e-15!61;UBERON:0003082!4.80e-15!61;UBERON:0000486!3.16e-12!82;UBERON:0005256!3.23e-12!143;UBERON:0003102!1.51e-09!95;UBERON:0002100!6.04e-08!216;UBERON:0004872!6.09e-08!84;UBERON:0001013!6.77e-08!14;UBERON:0002199!1.02e-07!45;UBERON:0002416!1.02e-07!45;UBERON:0000475!6.05e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.87e-09;198!UBERON:0001013;3.44e-08;14!UBERON:0004457;2.39e-07;9!UBERON:0000042;2.39e-07;9!UBERON:0003688;2.83e-07;6!UBERON:0002358;2.83e-07;6!UBERON:0003684;2.83e-07;6!UBERON:0001178;2.83e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.61e-17,62;UBERON:0002036,1.61e-17,62;UBERON:0003082,1.61e-17,62;UBERON:0007524,1.28e-16,73;UBERON:0002385,1.91e-16,64;UBERON:0001015,1.91e-16,64;UBERON:0000383,1.91e-16,64;UBERON:0002329,2.00e-16,71;UBERON:0003059,2.00e-16,71;UBERON:0007282,2.00e-16,71;UBERON:0004290,2.00e-16,71;UBERON:0009618,2.00e-16,71;UBERON:0003077,5.92e-16,72;UBERON:0007285,5.92e-16,72;UBERON:0007503,1.12e-15,78;UBERON:0000486,2.52e-13,83;UBERON:0005256,6.78e-12,122;UBERON:0003104,1.96e-10,160;UBERON:0009142,1.96e-10,160;UBERON:0002384,1.09e-09,371;UBERON:0000926,2.73e-08,315;UBERON:0004120,2.73e-08,315;UBERON:0006603,2.73e-08,315;UBERON:0001013,3.09e-08,14;UBERON:0003688,2.87e-07,6;UBERON:0002358,2.87e-07,6;UBERON:0003684,2.87e-07,6;UBERON:0001178,2.87e-07,6;UBERON:0002199,9.22e-07,46;UBERON:0002416,9.22e-07,46 | |||
|phase1_expression=27.7967920283952,23.7651581518991,49.7569046458778,17.0124607200322,50.9535647647108,16.574431957907,48.126976851979,1.89515962028049,1.30592814099919,0,0.697801167972428,0.436882744260345,7.3854753903967,2.35156070624089,0.994192127183747,2.01697543935533,0.602694528023977,0,0.975865597581014,1.72369481307503,4.08001382488506,5.01527554364941,0.286235987131057,0.136874425072884,0.87879847716362,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,3.35350429851818,2.55725123687061,10.1202962667679,14.0374614978049,12.31195411167,5.5670016293577,11.6792368872633,0.567208902984407,2.4390233720882,2.28370442802128,0.327447688744282,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0.33472061276467,0,0,0.732186172644509,0,0,0,0,0,0,0,0.183201743930407,0,0,0,39.7577561356255,19.880990331339,2.64818361626438,67.9802791174689,16.6694139633228,5.60677600142307,4.2699598291882,19.2400687765385,5.91300967259556,4.84958419450877,1.30769522490767,11.8058793563046,4.03323147135999,0.70296429550139,0.936480230490962,0,1.94283284717341,1.64408298101271,0.485618833104395,0.561803226808994,1.22492502752936,0.491337269247072,4.85631171526098,119.988288585487,84.5652898132664,5.46096817162816,16.5282172617735,0.336672227908132,2.00189631795143,1.10825646193673,9.2185300384976,16.5503409731471,55.137367618721,1.36118619792025,4.84352016359927,13.2405581067512,11.6562545637759,6.60200411385685,9.78999027765169,3.86460810068444,12.0975956615533,8.27004027982204,11.9847516348274,4.79624171063818,9.94138905336833,16.4878977955188,7.4552014428489,6.04512589365842,1.86516651541536,0,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0.310983165046111,0,0,6.25798129319264,4.5026865673502,0,1.85747171212792,0.721879481669586,0,0,0,0,0,0,0,0,0,0,8.41450642820675,11.9356463286106,13.2307840246988,0,0,0,0,0.122988438543114,1.54411029268673,0.109750285408626,0,0,0,0.325808305310325,1.03993478527958,1.44331342025273,0.115930404975077,0.821860859650752,0.144366447761074,0,0,0,0,0,0,0,0,0.671928512795438,0,0,0,0,0,0,0,0,0.37872730027914,0,0,0,0,0.102827492703324,0,0,2.24262168690721,5.66748089483264,1.24675085895615,8.14411809274,14.3062578340753,4.22651376278,12.4990914794889,14.5610411675913,1.28603687131071,1.41849132023278,2.39779961114489,6.71996570193294,32.5572963234866,3.29296134712308,3.25736184293735,6.75244702610837,2.37585561880029,4.22015127883421,2.61460037580088,1.79951384127703,0,0,0,19.8888630058014,49.390632408669,1.42636905040718,2.89562613335158,4.72595541865882,1.07436577943937,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,1.71768088406796,3.00102312635806,1.62759014219841,40.3463471369766,23.5526265212254,20.0282067093097,6.79420206957737,18.0567659836631,20.4666753650386,13.4514992680256,3.98535359121262,8.48098175291834,4.77859879574456,13.3144787074664,29.5103344477336,0,0,0,1.21251028578504,41.6088598776243,11.7932214398575,48.1329147168427,6.1384789315225,55.8513587921816,82.6497512699271,25.0736552042685,49.3821537910875,14.8418066444991,2.62156479464514,19.1766663338177,3.53146770859379,4.15403543346897,5.46188778761808,0.120859449591622,1.20303882181971,0,9.41478474949775,9.46874073634929,22.8156482029398,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,3.08454505380579,1.08378575017541,8.52872615553251,0,0,0,0,0,0,0,0.325378394664303,1.33953315142039,1.46511143709349,1.07262349896764,0.574265537996172,1.95018073810956,8.03419649220798,3.77015801339276,1.23238893691716,2.76306614507033,2.06754858726796,6.98231591643779,6.96080130788297,2.47157219506693,18.7857595214616,1.32227932288782,0.960950336825531,0.127612712494584,0.4046311234222,2.78907329578371,35.888607538693,1.3940745403212,1.23213432070436,1.59691809095107,0,2.03856641014312,1.00187420719394,2.60510858551767,2.84741482246853,14.6785249321345,4.35026245229268,2.1396949401696,6.36406495851874,4.70969184119538,4.8565563547495,11.5305552489143,6.36186972666707,1.61745985258653,0,0,3.90106991271672,2.43713489631284,2.11300293513511,12.1484921153107,39.5935209470396,15.821136326834,2.2054613741845,3.98063385144732,0,7.52408194546694,2.62357900818653,1.01455188481352,1.8589409885985,5.91560765317707,1.72093622644862,2.65272410735427,2.1400263088875,2.12856638442359,12.2442428472645,10.8667314676768,1.51789269506286,3.14941248220485,0,0,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.73254089635947,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,13.0636626817959,0,0,0,1.08507746200627,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,9.69573257147843,0.113942055847001,0,0,0,0.31900115973192,14.8388101311017,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,3.05515072466813,0,0,0,0,16.8541305932746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| ||
|short_description=p20@COL1A1 | |||
}} | }} |
Latest revision as of 00:55, 16 September 2015
Short description: | p20@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_J00110, K01228_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.75e-26 | 76 |
multi fate stem cell | 4.74e-19 | 427 |
somatic stem cell | 5.08e-18 | 433 |
muscle precursor cell | 3.42e-17 | 58 |
myoblast | 3.42e-17 | 58 |
multi-potent skeletal muscle stem cell | 3.42e-17 | 58 |
stem cell | 1.05e-16 | 441 |
muscle cell | 3.40e-16 | 55 |
electrically responsive cell | 3.75e-13 | 61 |
electrically active cell | 3.75e-13 | 61 |
smooth muscle cell | 2.24e-11 | 43 |
smooth muscle myoblast | 2.24e-11 | 43 |
preadipocyte | 5.50e-10 | 12 |
connective tissue cell | 1.08e-09 | 361 |
mesenchymal cell | 2.06e-08 | 354 |
stromal cell | 3.21e-08 | 28 |
mesodermal cell | 1.35e-07 | 121 |
extracellular matrix secreting cell | 1.66e-07 | 15 |
skin fibroblast | 3.76e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.61e-17 | 62 |
striated muscle tissue | 1.61e-17 | 62 |
myotome | 1.61e-17 | 62 |
dense mesenchyme tissue | 1.28e-16 | 73 |
muscle tissue | 1.91e-16 | 64 |
musculature | 1.91e-16 | 64 |
musculature of body | 1.91e-16 | 64 |
somite | 2.00e-16 | 71 |
presomitic mesoderm | 2.00e-16 | 71 |
presumptive segmental plate | 2.00e-16 | 71 |
dermomyotome | 2.00e-16 | 71 |
trunk paraxial mesoderm | 2.00e-16 | 71 |
paraxial mesoderm | 5.92e-16 | 72 |
presumptive paraxial mesoderm | 5.92e-16 | 72 |
epithelial vesicle | 1.12e-15 | 78 |
multilaminar epithelium | 2.52e-13 | 83 |
trunk mesenchyme | 6.78e-12 | 122 |
mesenchyme | 1.96e-10 | 160 |
entire embryonic mesenchyme | 1.96e-10 | 160 |
connective tissue | 1.09e-09 | 371 |
mesoderm | 2.73e-08 | 315 |
mesoderm-derived structure | 2.73e-08 | 315 |
presumptive mesoderm | 2.73e-08 | 315 |
adipose tissue | 3.09e-08 | 14 |
omentum | 2.87e-07 | 6 |
peritoneum | 2.87e-07 | 6 |
abdominal cavity | 2.87e-07 | 6 |
visceral peritoneum | 2.87e-07 | 6 |
integument | 9.22e-07 | 46 |
integumental system | 9.22e-07 | 46 |