FFCP PHASE1:Hg19::chr17:48264023..48264034,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:48264023..48264034,-
|short_description=p46@COL1A1
|description=CAGE_peak_46_at_COL1A1_5end
|association_with_transcript=139bp_to_ENST00000510710_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=139bp_to_ENST00000510710_5end | |||
|cluster_id=chr17:48264023..48264034,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_46_at_COL1A1_5end | |||
|id=chr17:48264023..48264034,- | |||
|ontology_enrichment_celltype=CL:0000055!1.51e-36!180;CL:0000057!1.30e-24!75;CL:0000183!6.09e-15!59;CL:0000680!9.81e-15!57;CL:0000056!9.81e-15!57;CL:0000355!9.81e-15!57;CL:0000187!3.81e-14!54;CL:0000048!5.57e-12!430;CL:0000723!2.48e-11!436;CL:0000393!3.57e-11!60;CL:0000211!3.57e-11!60;CL:0000192!8.30e-11!42;CL:0000514!8.30e-11!42;CL:0000034!9.75e-11!444;CL:0002371!3.80e-09!591;CL:0002620!1.54e-08!23;CL:0000144!2.40e-08!625;CL:0002334!4.81e-08!12;CL:0000499!5.18e-08!27;CL:0002570!7.87e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000134;4.32e-10;55!CL:0002334;1.14e-09;12!CL:0000723;2.69e-09;61!CL:0000057;3.74e-09;73!CL:0000048;4.01e-09;58!CL:0002570;5.69e-09;8!CL:0002320;9.47e-09;188!CL:0000499;1.46e-08;28!CL:0002569;2.95e-07;6!CL:0002620;3.08e-07;23!CL:0000034;3.18e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.10e-23,76;CL:0000048,1.91e-17,427;CL:0000723,1.19e-16,433;CL:0000034,1.25e-15,441;CL:0002320,3.16e-11,361;CL:0000187,4.19e-10,55;CL:0000134,5.59e-10,354;CL:0000680,8.07e-10,58;CL:0000056,8.07e-10,58;CL:0000355,8.07e-10,58;CL:0002334,1.63e-09,12;CL:0002570,5.04e-09,8;CL:0000499,1.62e-08,28;CL:0000192,2.54e-08,43;CL:0000514,2.54e-08,43;CL:0000393,2.88e-08,61;CL:0000211,2.88e-08,61;CL:0000219,3.04e-08,386;CL:0002569,1.96e-07,6;CL:0002620,3.04e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.65e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.35e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.11e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.61e-16!83;UBERON:0002329!1.61e-16!83;UBERON:0003077!1.61e-16!83;UBERON:0003059!1.61e-16!83;UBERON:0007282!1.61e-16!83;UBERON:0009618!1.61e-16!83;UBERON:0007285!1.61e-16!83;UBERON:0001134!5.78e-15!61;UBERON:0002036!5.78e-15!61;UBERON:0003082!5.78e-15!61;UBERON:0004290!6.95e-15!70;UBERON:0002385!6.29e-14!63;UBERON:0001015!6.29e-14!63;UBERON:0000383!6.29e-14!63;UBERON:0000486!3.52e-12!82;UBERON:0005256!2.12e-09!143;UBERON:0002100!1.34e-07!216;UBERON:0002384!5.90e-07!375;UBERON:0004872!6.18e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0003104;2.37e-08;7!UBERON:0009142;2.37e-08;7!UBERON:0002384;3.32e-08;198!UBERON:0001013;3.81e-08;14!UBERON:0004457;2.88e-07;9!UBERON:0000042;2.88e-07;9!UBERON:0003422;2.95e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,4.93e-12,371;UBERON:0001134,1.44e-10,62;UBERON:0002036,1.44e-10,62;UBERON:0003082,1.44e-10,62;UBERON:0002385,6.16e-10,64;UBERON:0001015,6.16e-10,64;UBERON:0000383,6.16e-10,64;UBERON:0007524,7.40e-10,73;UBERON:0002329,1.64e-09,71;UBERON:0003059,1.64e-09,71;UBERON:0007282,1.64e-09,71;UBERON:0004290,1.64e-09,71;UBERON:0009618,1.64e-09,71;UBERON:0003077,3.05e-09,72;UBERON:0007285,3.05e-09,72;UBERON:0001013,3.14e-08,14;UBERON:0000486,4.51e-08,83;UBERON:0007503,8.52e-08,78;UBERON:0002199,1.08e-07,46;UBERON:0002416,1.08e-07,46;UBERON:0003422,1.96e-07,6 | |||
|phase1_expression=1.99846217197612,5.78071414505655,2.81908808191942,2.00146596706261,5.36353313312745,2.61701557230111,12.6649939084155,0,0,0.491467873003018,0,0.436882744260345,2.63766978228454,1.23766352960047,0.662794751455832,2.6893005858071,3.01347264011988,0.730310090387373,1.46379839637152,1.35433163884467,2.44800829493104,2.82109249330279,0.572471974262113,0.136874425072884,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,2.43806866313962,2.68280343881454,2.9408389224012,1.44575660953827,3.50936537445123,5.64901423947212,18.2915767821753,7.29952305453954,0.189069634328136,1.33037638477538,1.22968699970376,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,11.9273268406876,2.27934920996244,0.794455084879313,12.9076479336966,5.32002573297536,3.36406560085384,4.2699598291882,15.7867230986982,0,0.67355336034844,0.817309515567294,2.11900398702904,3.45705554687999,0,0,0,0.448346041655403,0.117434498643765,0.323745888736263,0.140450806702248,0.204154171254893,0.368502951935304,0.206651562351531,5.94001428641027,6.67620709052104,4.55080680969013,2.87447256726495,0.168336113954066,1.25118519871964,0,4.82875382968922,3.37136575378922,5.85928429735728,1.13432183160021,6.63741652048789,4.91181994282705,3.60284231971255,4.50136644126603,2.26715564324566,4.63752972082133,3.53622027030021,4.72573730275545,2.33848812386877,5.04867548488229,2.20919756741518,1.61646056818812,4.9701342952326,1.0075209822764,1.52604533079439,0,0,0,0,0,0.232387885739037,0,0.252320850875628,0,1.56449532329816,5.14592750554308,0,3.71494342425583,4.33127689001751,0,0,0,0,0,0.237270619111097,0.134831308160164,0,0,0,0,7.4083322039652,19.1111324801205,0,0,0,0,0,0.857839051492628,0,0,0,0.0925884451585296,0.325808305310325,1.03993478527958,1.44331342025273,0.115930404975077,1.29149563659404,0,0,0,0,0,0,0,0,0,0.839910640994298,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.784917590417525,0.87192013766656,0.95339771567235,1.80980402060889,17.8828222925941,6.762422020448,3.72313363218819,0,0.514414748524284,1.41849132023278,0.799266537048298,5.7191197463259,19.5343777940919,4.93944202068461,1.95441710576241,4.97548728239564,4.75171123760058,0,0,0.299918973546171,0,0,0,4.55287225434007,9.18895486672911,1.42636905040718,1.15825045334063,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.8403723757871,1.00034104211935,0.813795071099207,19.9652027069575,27.2996352859657,11.985383542579,3.5142424497814,2.40756879782175,9.09630016223939,1.03473071292505,3.32112799267718,2.58116835958384,1.04260337361699,2.54541504701563,3.0882908142977,0,0,0,0.303127571446259,3.32870879020994,5.74541557326393,3.2254015016441,4.60385919864187,13.1910244383545,4.48487022394953,2.55853624533352,10.2946509531909,1.48418066444991,3.39261326365842,4.26148140751505,0.410635780069046,2.07701771673448,2.32420756919918,0,0,0,2.98517565227978,3.09554985611419,3.2781103739856,0,0,0,0,0,0,0,0.431831832204279,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0,0,0,0,1.09883357782012,0.330037999682352,0.574265537996172,0,1.6068392984416,0.290012154876366,0.616194468458578,0.614014698904518,0,1.28904293841928,2.46528379654188,0.596586391912706,4.27353771104339,0,0.192190067365106,0.127612712494584,0.2023155617111,2.32422774648643,6.92587163027408,0,1.84820148105653,0,0,0.37064843820784,0.143124886741991,0,1.2655176988749,3.24071329670502,2.55897791311334,1.28381696410176,0.318203247925937,3.13979456079692,1.2591072030832,3.0199073270966,2.00281083987667,0.202182481573316,0,0.842516912477962,4.38870365180631,1.46228093778771,1.05650146756755,1.50149902548784,7.35308246159306,3.39024349860728,1.65409603063837,1.32687795048244,0,1.73632660280006,3.27947376023316,0.608731130888112,0.6196469961995,0.281695602532241,0.717056761020258,2.94747123039363,1.07001315444375,0.354761064070598,5.06658324714394,2.63435914367922,0.75894634753143,1.04980416073495,0,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.593929361665277,0,0,0,0,0,0,0.597743964753209,0,0,0,0,4.66559381492711,0,0,0,0.197286811273867,0,2.22273980289274,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0.347249989866585,0,0,0,0,0,0,0,0,1.15425387755696,0.113942055847001,0,0,0.108647371922008,0,1.00757352742049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0.067401132980677,10.4335094148843,0,0,0,0,0,1.20990716048664,0.30607276163049,0.31593289814244,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.52418000472609,0,0.0967563312890851,0,0,0.0969890164884194,0,4.29363407483012,0,0,0,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.43812353135966,0,0.558564802544508,0.458320848023367,0,0.19967900049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| ||
|short_description=p46@COL1A1 | |||
}} | }} |
Latest revision as of 23:53, 15 September 2015
Short description: | p46@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_46_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 139bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.10e-23 | 76 |
multi fate stem cell | 1.91e-17 | 427 |
somatic stem cell | 1.19e-16 | 433 |
stem cell | 1.25e-15 | 441 |
connective tissue cell | 3.16e-11 | 361 |
muscle cell | 4.19e-10 | 55 |
mesenchymal cell | 5.59e-10 | 354 |
muscle precursor cell | 8.07e-10 | 58 |
myoblast | 8.07e-10 | 58 |
multi-potent skeletal muscle stem cell | 8.07e-10 | 58 |
preadipocyte | 1.63e-09 | 12 |
mesenchymal stem cell of adipose | 5.04e-09 | 8 |
stromal cell | 1.62e-08 | 28 |
smooth muscle cell | 2.54e-08 | 43 |
smooth muscle myoblast | 2.54e-08 | 43 |
electrically responsive cell | 2.88e-08 | 61 |
electrically active cell | 2.88e-08 | 61 |
motile cell | 3.04e-08 | 386 |
mesenchymal stem cell of umbilical cord | 1.96e-07 | 6 |
skin fibroblast | 3.04e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 4.93e-12 | 371 |
skeletal muscle tissue | 1.44e-10 | 62 |
striated muscle tissue | 1.44e-10 | 62 |
myotome | 1.44e-10 | 62 |
muscle tissue | 6.16e-10 | 64 |
musculature | 6.16e-10 | 64 |
musculature of body | 6.16e-10 | 64 |
dense mesenchyme tissue | 7.40e-10 | 73 |
somite | 1.64e-09 | 71 |
presomitic mesoderm | 1.64e-09 | 71 |
presumptive segmental plate | 1.64e-09 | 71 |
dermomyotome | 1.64e-09 | 71 |
trunk paraxial mesoderm | 1.64e-09 | 71 |
paraxial mesoderm | 3.05e-09 | 72 |
presumptive paraxial mesoderm | 3.05e-09 | 72 |
adipose tissue | 3.14e-08 | 14 |
multilaminar epithelium | 4.51e-08 | 83 |
epithelial vesicle | 8.52e-08 | 78 |
integument | 1.08e-07 | 46 |
integumental system | 1.08e-07 | 46 |
mesenchyme of umbilical cord | 1.96e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.11e-08 | 14 |