FFCP PHASE1:Hg19::chr14:55604894..55604912,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3958 | |EntrezGene=3958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6563 | |HGNC=6563 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=132bp_to_ENST00000556263_5end | |association_with_transcript=132bp_to_ENST00000556263_5end | ||
|cluster_id=chr14:55604894..55604912,+ | |||
|description=CAGE_peak_3_at_LGALS3_5end | |description=CAGE_peak_3_at_LGALS3_5end | ||
|id=chr14:55604894..55604912,+ | |id=chr14:55604894..55604912,+ | ||
|ontology_enrichment_celltype=CL:0000839!1.72e-23!70;CL:0002194!2.48e-21!63;CL:0000576!2.48e-21!63;CL:0000040!2.48e-21!63;CL:0000559!2.48e-21!63;CL:0000557!2.68e-21!71;CL:0002009!3.02e-20!65;CL:0000860!5.65e-20!45;CL:0002057!2.64e-19!42;CL:0000766!1.63e-18!76;CL:0002371!4.03e-07!591 | |ontology_enrichment_celltype=CL:0000839!1.72e-23!70;CL:0002194!2.48e-21!63;CL:0000576!2.48e-21!63;CL:0000040!2.48e-21!63;CL:0000559!2.48e-21!63;CL:0000557!2.68e-21!71;CL:0002009!3.02e-20!65;CL:0000860!5.65e-20!45;CL:0002057!2.64e-19!42;CL:0000766!1.63e-18!76;CL:0002371!4.03e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.81e-29;33!CL:0002057;2.81e-29;33!CL:0000473;7.14e-29;39!CL:0000234;7.14e-29;39!CL:0000576;7.86e-17;48!CL:0000766;5.52e-12;69!CL:0000235;6.76e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.62e-33,48;CL:0000234,1.62e-33,48;CL:0000839,5.37e-32,66;CL:0002194,1.26e-30,59;CL:0000576,1.26e-30,59;CL:0000040,1.26e-30,59;CL:0000559,1.26e-30,59;CL:0000557,1.11e-29,67;CL:0002009,4.69e-29,61;CL:0000860,1.02e-27,42;CL:0002057,1.02e-27,42;CL:0000766,2.35e-26,72;CL:0000763,8.58e-13,108;CL:0000049,8.58e-13,108;CL:0002031,1.35e-10,120;CL:0002087,7.49e-09,115;CL:0000235,2.39e-07,6;CL:0000738,3.76e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;2.13e-21;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.69e-19!80;UBERON:0004765!9.17e-18!101;UBERON:0001434!9.17e-18!101;UBERON:0001474!5.41e-17!86;UBERON:0002204!4.52e-16!167;UBERON:0002193!2.95e-14!112;UBERON:0002390!3.70e-14!102;UBERON:0003061!3.70e-14!102;UBERON:0000926!1.59e-12!448;UBERON:0004120!1.59e-12!448;UBERON:0006603!1.59e-12!448;UBERON:0000468!7.61e-12!659;UBERON:0002405!6.49e-11!115;UBERON:0000480!7.62e-11!626;UBERON:0003081!9.44e-11!216;UBERON:0000467!1.34e-10!625;UBERON:0000062!1.51e-08!511;UBERON:0002050!1.65e-07!605;UBERON:0005423!1.65e-07!605;UBERON:0000923!2.75e-07!604;UBERON:0005291!2.75e-07!604;UBERON:0006598!2.75e-07!604;UBERON:0002532!2.75e-07!604;UBERON:0000922!7.25e-07!612 | |ontology_enrichment_uberon=UBERON:0002371!1.69e-19!80;UBERON:0004765!9.17e-18!101;UBERON:0001434!9.17e-18!101;UBERON:0001474!5.41e-17!86;UBERON:0002204!4.52e-16!167;UBERON:0002193!2.95e-14!112;UBERON:0002390!3.70e-14!102;UBERON:0003061!3.70e-14!102;UBERON:0000926!1.59e-12!448;UBERON:0004120!1.59e-12!448;UBERON:0006603!1.59e-12!448;UBERON:0000468!7.61e-12!659;UBERON:0002405!6.49e-11!115;UBERON:0000480!7.62e-11!626;UBERON:0003081!9.44e-11!216;UBERON:0000467!1.34e-10!625;UBERON:0000062!1.51e-08!511;UBERON:0002050!1.65e-07!605;UBERON:0005423!1.65e-07!605;UBERON:0000923!2.75e-07!604;UBERON:0005291!2.75e-07!604;UBERON:0006598!2.75e-07!604;UBERON:0002532!2.75e-07!604;UBERON:0000922!7.25e-07!612 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.20e-27,76;UBERON:0004765,1.80e-25,90;UBERON:0001474,3.40e-25,82;UBERON:0001434,5.69e-25,100;UBERON:0002405,5.28e-22,93;UBERON:0002390,2.95e-21,98;UBERON:0003061,2.95e-21,98;UBERON:0002193,5.10e-20,108;UBERON:0002204,7.79e-19,167;UBERON:0003081,9.99e-13,203;UBERON:0000926,4.92e-11,315;UBERON:0004120,4.92e-11,315;UBERON:0006603,4.92e-11,315 | |||
|phase1_expression=0.908391896352783,1.49870366723688,0.140954404095971,0,0,0,0,1.26343974685366,1.30592814099919,0,2.09340350391728,0.873765488520689,1.58260186937072,1.11389717664042,1.65698687863958,1.34465029290355,1.20538905604795,0,0.487932798790507,0.123121058076788,0.204000691244253,1.25381888591235,0.286235987131057,1.23186982565596,0.502170558379211,0.0764134057479513,0,0,0.393364276848904,0,0.464448369948228,1.83884244895785,0.90361775633475,2.21852406100073,0,0,0,0,1.00272223735071,0.651032612147555,0.895661896959697,2.91504299417082,1.03030227053675,5.67053131240302,7.17964293008738,5.09426528494414,6.0431549595478,6.16751832032739,9.91060386864331,2.3015391385772,4.86705342405291,7.56743135643473,6.20542225325913,7.10033151942209,5.41705946377367,6.02375486536335,11.4620583024295,11.4608977066993,5.81559395504715,4.17207735198922,5.75403413219137,3.62836430205388,2.99195486432448,7.2458207590558,9.57690487474327,5.10646702222026,6.22822248995575,7.5374599577023,6.77927793946262,3.04064382587163,6.05399502633369,4.05105399586321,9.81033401066742,2.32380814943136,1.27562579979026,1.04829322754188,1.01095768031846,0.600707571366025,0,0.285012743741249,0.79566670879636,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.501559486172034,0,0,0,0.111410456885174,0,0.221533894583621,0,1.40900451698243,1.30059347559878,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0.473554504088034,0,0,0.267440195783507,0,2.43806866313962,2.01210257911091,0.12786256184353,0,1.00267582127178,1.15877215168659,0.795285947051099,0,0.378139268656271,0.221729397462564,0.263504357079378,0.196468613246569,0.364295288292542,0.370784442784429,2.27183175558278,1.0447784237956,5.58423434179234,0,0,0,0,0.860234595106124,0,0.56530794192401,0,0.550236083880135,0.208994966536811,0.258416759169329,1.06729878806013,0,0,0.760272105718513,1.22031028774085,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.506522046658319,0.264818361626438,0.573673241497627,1.06400514659507,2.24271040056923,0,0.74000264525148,0,0.942974704487816,0.326923806226917,0.756787138224657,1.72852777344,0,0.936480230490962,0.570471821544449,1.64393548606981,0.469737994575059,0.485618833104395,0.280901613404497,0.204154171254893,0.859840221182376,2.58314452939414,0,3.21447008062124,0.910161361938026,2.87447256726495,0,0.125118519871964,0.277064115484183,0.877955241761676,1.83892677479412,1.05166641234618,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,1.03052529238439,0.515281080091258,0.558350568994769,0.168776332241266,0.292311015483596,0.757301322732344,0.644349290496095,0.646584227275248,0,0.302256294682921,0.339121184620975,0.386521706326594,0,0.286804595389004,0,0,0,0,0,0,3.12899064659632,0.643240938192885,0,2.3218396401599,1.44375896333917,1.41968160047813,0.842923450390509,1.68707720918437,2.20587945464788,1.30727666455444,1.42362371466658,1.21348177344148,0.98110732562673,0.38474715694639,0,1.40241773803446,0.4115740113314,0,0,0,0,0,0.614942192715568,0.343135620597051,0.548751427043128,0,1.20634766893957,0.555530670951178,0,1.03993478527958,0,0.115930404975077,0,0.144366447761074,0.925971025153221,1.14152491340759,3.1608175918371,1.71697232418975,1.96973604869918,1.63802985597466,2.82399208348584,0.93733833986777,0.671928512795438,0.141775097242386,0.179117045405697,0,0,0.492663237895943,0.704387472105808,3.7319060797339,3.747118788841,6.43836410474538,1.39695367442772,2.67391897890794,1.17217447210047,5.13217338068116,4.52440967894623,4.50514586765876,5.71652865261156,0,0,0.1466765716419,0,0,2.535908257668,0.797814349754612,0,0,0,0.266422179016099,0.285955987316295,0,0.823240336780769,0.325736184293735,0,0.791951872933429,0,0,0.299918973546171,14.5948536769429,9.5428847372104,8.43335757932127,0,1.14861935834114,0,0.434343920002738,1.64381058040307,0,0.224170287987055,0,0,0,0.76228387266739,0,1.54657762555539,1.17261385734044,3.82763250991898,0,0,0,0.613457458595699,2.00068208423871,1.62759014219841,1.45579603071565,3.92543775353756,1.26161932027148,0.819989904948992,0.601892199455438,11.3703752027992,1.03473071292505,0,0.368738337083406,0.60818530127658,0.391602314925481,1.02943027143257,0,0.647142602455851,0.320182673410333,1.21251028578504,0,2.11673205330776,0.248107807818777,0,0.841980283299221,0,0,0.160853921143607,1.48418066444991,0.616838775210622,1.24293207719189,0,0,1.74315567689939,1.57117284469109,1.20303882181971,0.644566922551274,0.574072240823034,0.728364672026868,2.62248829918848,0.451199612907412,0,0,0,0.316654886678627,0,0.340187410553031,0.215915916102139,0,0,0.501689773854853,0,0,0.671624264166535,2.41185864310528,0.261435451024901,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0,0,1.30012049207304,0,0.386682873168488,0.770243085573222,0.460511024178389,0.551346289938122,0.322260734604821,1.74020032697074,0.596586391912706,0.0890320356467374,0.495854746082934,0.192190067365106,0,0.4046311234222,0,0.31481234683064,0,0,0,0.869932992075073,0,0.7156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| ||
|short_description=p3@LGALS3 | |short_description=p3@LGALS3 | ||
}} | }} |
Latest revision as of 16:12, 24 September 2015
Short description: | p3@LGALS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LGALS3_5end |
Coexpression cluster: | NA |
Association with transcript: | 132bp_to_ENST00000556263_5end |
EntrezGene: | LGALS3 |
HGNC: | 6563 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.62e-33 | 48 |
phagocyte | 1.62e-33 | 48 |
myeloid lineage restricted progenitor cell | 5.37e-32 | 66 |
monopoietic cell | 1.26e-30 | 59 |
monocyte | 1.26e-30 | 59 |
monoblast | 1.26e-30 | 59 |
promonocyte | 1.26e-30 | 59 |
granulocyte monocyte progenitor cell | 1.11e-29 | 67 |
macrophage dendritic cell progenitor | 4.69e-29 | 61 |
classical monocyte | 1.02e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.02e-27 | 42 |
myeloid leukocyte | 2.35e-26 | 72 |
myeloid cell | 8.58e-13 | 108 |
common myeloid progenitor | 8.58e-13 | 108 |
hematopoietic lineage restricted progenitor cell | 1.35e-10 | 120 |
nongranular leukocyte | 7.49e-09 | 115 |
macrophage | 2.39e-07 | 6 |
leukocyte | 3.76e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.20e-27 | 76 |
skeletal element | 1.80e-25 | 90 |
bone element | 3.40e-25 | 82 |
skeletal system | 5.69e-25 | 100 |
immune system | 5.28e-22 | 93 |
hematopoietic system | 2.95e-21 | 98 |
blood island | 2.95e-21 | 98 |
hemolymphoid system | 5.10e-20 | 108 |
musculoskeletal system | 7.79e-19 | 167 |
lateral plate mesoderm | 9.99e-13 | 203 |
mesoderm | 4.92e-11 | 315 |
mesoderm-derived structure | 4.92e-11 | 315 |
presumptive mesoderm | 4.92e-11 | 315 |